Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032216.1

Orthogroup ID

OG0002455

Physical Location & Seq

Genomic Coordinates Reverse (-)

4035 .. 4526

Gene Structure 492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032216.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atgcttgctgccatccacaaacacatcatccgcacccaatttcagtgctctcgaagttactctgctgcttatgcaatcagtcttcagaacagctccaaaaattggcaacagctcagagaagagaaactgaaggcgagcacattcgccgcggctgtcggattctggcctcgccagcgggtcaagctctggcgagagaagattggagctgttaagccgttttccggtaacctgtctacctcctggagtaacatcaaagaagaagaagctgtccaaagatacaggatgataacccaaaacaatgttttgcctcctcggttccaagtccatagcaaagctgattggctcgccgcttcaccggatgggatggtcgaattgccttccaattcgacaggagtactggaaatcaagtgcccatttttcgacggagaaagagccgggccttgccgtggttgcgcattccggtgcactgtatcccccaggctcagggattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YqaJ

Protein Analysis

163

Amino Acids

18.49

Weight (kDa)

9.87

Isoelectric Point (pI)

43.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002455)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13810
fragaria_vesca	FvH4_2g14912 FvH4_2g14912 FvH4_2g20261
malus_domestica	MD14G1083500.v1.1
prunus_persica	Prupe.3G017000_v2.0.a1 Prupe.4G287100_v2.0.a1 Prupe.4G287100_v2.0.a1 Prupe.4G287100_v2.0.a1
pyrus_communis	pycom14g07250
rosa_chinensis	RchiOBHm_Chr6g0277511 RchiOBHm_Chr6g0286051
rosa_laevigata	RLG00000012586 RLG00000013296
rosa_multiflora	Rmu_sc0003910.1_g000009 Rmu_sc0032216.1_g000001 Rmu_sc0035337.1_g000001 Rmu_sc0035338.1_g000001
rosa_roxburghii	Rroxscaffold_7G00182500 Rroxscaffold_7G00191260
rosa_rugosa	Rorug06G0108700 Rorug06G0108700 Rorug06G0108800 Rorug06G0108900 Rorug06G0109000 Rorug06G0109100 Rorug06G0109200 Rorug06G0109300 Rorug06G0178600
rosa_samantha	Rh6AG219600 Rh6AG290700 Rh6BG223500 Rh6BG294100 Rh6CG226000 Rh6CG293600 Rh6DG216400 Rh6DG285700 Rh7AG416300 Rh7CG435600
rosa_wichuraiana	Rw6G019230 Rw6G025040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	454
AccB7I	CCANNNNNTGG	1 cut(s)	102
AccI	GTMKAC	1 cut(s)	233
AccII	CGCG	1 cut(s)	149
AciI	CCGC	5 cut(s)	31, 147, 149, 175, 348
AcuI	CTGAAG	2 cut(s)	68, 149
AfaI	GTAC	1 cut(s)	396
AfiI	CCNNNNNNNGG	4 cut(s)	102, 221, 446, 483
AjnI	CCWGG	2 cut(s)	239, 476
AluBI	AGCT	6 cut(s)	93, 112, 184, 206, 266, 335
AluI	AGCT	6 cut(s)	93, 112, 184, 206, 266, 335
Alw21I	GWGCWC	3 cut(s)	50, 140, 467
Alw44I	GTGCAC	1 cut(s)	463
AoxI	GGCC	2 cut(s)	164, 437
ApaLI	GTGCAC	1 cut(s)	463
ApeKI	GCWGC	2 cut(s)	8, 65
AspLEI	GCGC	1 cut(s)	455
AspS9I	GGNCC	1 cut(s)	437
AsuC2I	CCSGG	1 cut(s)	436
AsuHPI	GGTGA	1 cut(s)	345
BaeGI	GKGCMC	2 cut(s)	413, 467
BbsI	GAAGAC	1 cut(s)	74
Bbv12I	GWGCWC	3 cut(s)	50, 140, 467
BbvI	GCAGC	1 cut(s)	52
BccI	CCATC	3 cut(s)	20, 353, 358
BceAI	ACGGC	2 cut(s)	199, 429
BciT130I	CCWGG	2 cut(s)	241, 478
BciVI	GTATCC	1 cut(s)	481
BcnI	CCSGG	1 cut(s)	436
BfuI	GTATCC	1 cut(s)	481
BisI	GCNGC	5 cut(s)	9, 66, 147, 150, 348
BlsI	GCNGC	5 cut(s)	10, 67, 148, 151, 349
BmcAI	AGTACT	1 cut(s)	396
Bme1390I	CCNGG	3 cut(s)	241, 436, 478
BmgT120I	GGNCC	1 cut(s)	437
BmiI	GGNNCC	1 cut(s)	317
BmrFI	CCNGG	3 cut(s)	241, 436, 478
BpiI	GAAGAC	1 cut(s)	74
BpmI	CTGGAG	1 cut(s)	262
Bpu10I	CCTNAGC	1 cut(s)	482
BpuMI	CCSGG	1 cut(s)	436
BsaJI	CCNNGG	4 cut(s)	147, 311, 445, 476
BsaWI	WCCGGW	3 cut(s)	221, 355, 459
Bsc4I	CCNNNNNNNGG	4 cut(s)	102, 221, 446, 483
Bse1I	ACTGG	1 cut(s)	402
BseBI	CCWGG	2 cut(s)	241, 478
BseDI	CCNNGG	4 cut(s)	147, 311, 445, 476
BseGI	GGATG	5 cut(s)	12, 27, 288, 364, 369
BseLI	CCNNNNNNNGG	4 cut(s)	102, 221, 446, 483
BseMII	CTCAG	1 cut(s)	127
BseNI	ACTGG	1 cut(s)	402
BseRI	GAGGAG	1 cut(s)	300
BseSI	GKGCMC	2 cut(s)	413, 467
BseXI	GCAGC	1 cut(s)	52
Bsh1236I	CGCG	1 cut(s)	149
BshFI	GGCC	2 cut(s)	166, 439
BsiHKAI	GWGCWC	3 cut(s)	50, 140, 467
BsiSI	CCGG	4 cut(s)	222, 356, 435, 460
BslI	CCNNNNNNNGG	4 cut(s)	102, 221, 446, 483
BsmI	GAATGC	1 cut(s)	455
BsnI	GGCC	2 cut(s)	166, 439
Bsp1286I	GDGCHC	4 cut(s)	50, 140, 413, 467
BspACI	CCGC	5 cut(s)	31, 147, 149, 175, 348
BspANI	GGCC	2 cut(s)	166, 439
BspCNI	CTCAG	1 cut(s)	126
BspFNI	CGCG	1 cut(s)	149
BspLI	GGNNCC	1 cut(s)	317
BsrI	ACTGG	1 cut(s)	402
BssECI	CCNNGG	4 cut(s)	147, 311, 445, 476
Bst2UI	CCWGG	2 cut(s)	241, 478
Bst4CI	ACNGT	1 cut(s)	469
Bst6I	CTCTTC	1 cut(s)	114
BstC8I	GCNNGC	4 cut(s)	6, 136, 173, 345
BstDEI	CTNAG	2 cut(s)	113, 482
BstDSI	CCRYGG	2 cut(s)	147, 445
BstEII	GGTNACC	1 cut(s)	224
BstF5I	GGATG	5 cut(s)	12, 27, 288, 364, 369
BstFNI	CGCG	1 cut(s)	149
BstHHI	GCGC	1 cut(s)	455
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 172, 181, 450
BstNI	CCWGG	2 cut(s)	241, 478
BstPI	GGTNACC	1 cut(s)	224
BstSCI	CCNGG	3 cut(s)	239, 434, 476
BstSLI	GKGCMC	2 cut(s)	413, 467
BstUI	CGCG	1 cut(s)	149
BstV1I	GCAGC	1 cut(s)	52
BstV2I	GAAGAC	1 cut(s)	74
BsuI	GTATCC	1 cut(s)	481
BsuRI	GGCC	2 cut(s)	166, 439
BtgI	CCRYGG	2 cut(s)	147, 445
BtsCI	GGATG	5 cut(s)	12, 27, 288, 364, 369
BtsIMutI	CAGTG	2 cut(s)	50, 465
Cac8I	GCNNGC	4 cut(s)	6, 136, 173, 345
CfoI	GCGC	1 cut(s)	455
Cfr13I	GGNCC	1 cut(s)	437
Cfr42I	CCGCGG	1 cut(s)	150
Csp6I	GTAC	1 cut(s)	395
CviQI	GTAC	1 cut(s)	395
DdeI	CTNAG	2 cut(s)	113, 482
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
Eco57I	CTGAAG	2 cut(s)	68, 149
Eco91I	GGTNACC	1 cut(s)	224
EcoO65I	GGTNACC	1 cut(s)	224
EcoRII	CCWGG	2 cut(s)	239, 476
FaiI	YATR	2 cut(s)	72, 327
FauI	CCCGC	1 cut(s)	168
FblI	GTMKAC	1 cut(s)	233
Fnu4HI	GCNGC	5 cut(s)	9, 66, 147, 150, 348
FokI	GGATG	4 cut(s)	14, 295, 371, 376
Fsp4HI	GCNGC	5 cut(s)	9, 66, 147, 150, 348
FspI	TGCGCA	1 cut(s)	454
GlaI	GCGC	1 cut(s)	454
GluI	GCNGC	5 cut(s)	9, 66, 147, 150, 348
GsuI	CTGGAG	1 cut(s)	262
HaeIII	GGCC	2 cut(s)	166, 439
HapII	CCGG	4 cut(s)	222, 356, 435, 460
HhaI	GCGC	1 cut(s)	455
Hin6I	GCGC	1 cut(s)	453
HinP1I	GCGC	1 cut(s)	453
HinfI	GANTC	1 cut(s)	159
HpaII	CCGG	4 cut(s)	222, 356, 435, 460
HphI	GGTGA	1 cut(s)	345
Hpy166II	GTNNAC	2 cut(s)	234, 465
Hpy188I	TCNGA	3 cut(s)	87, 116, 158
Hpy188III	TCNNGA	1 cut(s)	51
Hpy8I	GTNNAC	2 cut(s)	234, 465
Hpy99I	CGWCG	1 cut(s)	425
HpyAV	CCTTC	2 cut(s)	124, 387
HpyCH4III	ACNGT	1 cut(s)	469
HpyCH4V	TGCA	2 cut(s)	74, 465
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 172, 181, 450
HpyF3I	CTNAG	2 cut(s)	113, 482
HspAI	GCGC	1 cut(s)	453
KspI	CCGCGG	1 cut(s)	150
LmnI	GCTCC	2 cut(s)	98, 203
Lsp1109I	GCAGC	1 cut(s)	52
MaeIII	GTNAC	3 cut(s)	56, 224, 245
MboII	GAAGA	5 cut(s)	74, 131, 208, 269, 272
MhlI	GDGCHC	4 cut(s)	50, 140, 413, 467
MluCI	AATT	4 cut(s)	38, 100, 371, 382
MmeI	TCCRAC	1 cut(s)	136
MnlI	CCTC	4 cut(s)	177, 247, 318, 321
MseI	TTAA	1 cut(s)	210
MslI	CAYNNNNRTG	1 cut(s)	460
MspA1I	CMGCKG	2 cut(s)	149, 175
MspI	CCGG	4 cut(s)	222, 356, 435, 460
MspR9I	CCNGG	3 cut(s)	241, 436, 478
Mva1269I	GAATGC	1 cut(s)	455
MvaI	CCWGG	2 cut(s)	241, 478
MvnI	CGCG	1 cut(s)	149
MwoI	GCNNNNNNNGC	4 cut(s)	71, 172, 181, 450
NciI	CCSGG	1 cut(s)	436
NlaIV	GGNNCC	1 cut(s)	317
NsbI	TGCGCA	1 cut(s)	454
PctI	GAATGC	1 cut(s)	455
PfeI	GAWTC	1 cut(s)	159
PflMI	CCANNNNNTGG	1 cut(s)	102
PfoI	TCCNGGA	1 cut(s)	239
PkrI	GCNGC	5 cut(s)	10, 67, 148, 151, 349
Psp6I	CCWGG	2 cut(s)	239, 476
PspEI	GGTNACC	1 cut(s)	224
PspGI	CCWGG	2 cut(s)	239, 476
PspN4I	GGNNCC	1 cut(s)	317
PspPI	GGNCC	1 cut(s)	437
RsaI	GTAC	1 cut(s)	396
RsaNI	GTAC	1 cut(s)	395
RseI	CAYNNNNRTG	1 cut(s)	460
SacII	CCGCGG	1 cut(s)	150
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	5 cut(s)	9, 66, 147, 150, 348
Sau96I	GGNCC	1 cut(s)	437
ScaI	AGTACT	1 cut(s)	396
ScrFI	CCNGG	3 cut(s)	241, 436, 478
SduI	GDGCHC	4 cut(s)	50, 140, 413, 467
SetI	ASST	8 cut(s)	95, 114, 186, 208, 231, 239, 268, 337
Sfr303I	CCGCGG	1 cut(s)	150
SgrBI	CCGCGG	1 cut(s)	150
SmiMI	CAYNNNNRTG	1 cut(s)	460
Sse9I	AATT	4 cut(s)	38, 100, 371, 382
SsiI	CCGC	5 cut(s)	31, 147, 149, 175, 348
StyD4I	CCNGG	3 cut(s)	239, 434, 476
TaaI	ACNGT	1 cut(s)	469
TaqI	TCGA	4 cut(s)	52, 369, 386, 420
TasI	AATT	4 cut(s)	38, 100, 371, 382
TatI	WGTACW	1 cut(s)	394
TauI	GCSGC	3 cut(s)	149, 152, 350
TfiI	GAWTC	1 cut(s)	159
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TscAI	CASTG	2 cut(s)	50, 472
TseI	GCWGC	2 cut(s)	8, 65
TspGWI	ACGGA	1 cut(s)	438
TspRI	CASTG	2 cut(s)	50, 472
Van91I	CCANNNNNTGG	1 cut(s)	102
VneI	GTGCAC	1 cut(s)	463
XmiI	GTMKAC	1 cut(s)	233
ZrmI	AGTACT	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.