AT1G13920

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0004384
Physical Location & Seq
Forward (+)
4758084 .. 4760238
2155 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G13920.1

Sequence Viewer

Length: 1038 bp
ATGGATACCTTAATCAAGCAGACAAGGAGGAAGCATCCAGCTTCCCAGGAAAAAATTAGAGAGGTTGGTAGCTCAACTAGAGAGAAAAAAGTGTCAGCAAGGAAGTCTGTTTCATTCAAAGAAGATAAGAAGAAGCCTTCAAACTGGTTACAGAAGCAGTTCTCGAGGCAAATGAGTGGCCAAAGTTATGATCCCATCGGAGAAATGGATCATGCAGCTGCAGTTGCAGCCACTGCCTATGCCATAGCCACTTTTGAAGAAACTTGGCTAGAGAACTATCATAGTGGCCTTGAACTTGGACCTTCTTCGTCAAGGAGCAAGAGCAGAAGTGAAGAACTGTTGCCTTTAGAGGAACCAAGAAGCTTATCAAGAAGATTCTCAGGGCAACTTTCGTTTATAGATTCAGAGACGAAAGATCATAAACCTCCTACACTAAAGTCCCCAATGAGAAAGTCATCTTCGGTAAAAAAGACTTTCTCCATGAACTTGATGGGAGACCACACCAAACAGAATCAAGATTCAGAGGAGAAACATGAAAGACAAAGAAAACCGGTTTCTGAACCACCACGGATACAACCACCGCTTAGGACACGATCAGAACCTCGTGCTCCACCGCCACCTCCTCCTCCTCTTCTATCACCTTCGCCTCTGCGGCTTCCACCTAGGGAAACCAAAAGGCAGAGTTCTGAGCATACTAGTCGAAAGGATGATTCTACAGCTGATGCTTGGGAAAAAGCTGAACTATCTAAGATCAAAGCAAGGTATGAGAAGTTAAACAGAAAGATAGATTTGTGGGAAGCGAAGAAAAGGGAAAAAGCTCGAAGGAAGCTGGACATATCTGAGCAGAGCGAACTAGAACAGAGGAGAAAGAGAGGTTTGCAGAGATTTAGAGAAGACACAGAATACATTGAACAGATTGCTGCTGGAGCCAGAGCTCAGGCGGAGAAAGACAGACAGAGCAAAGAGTTCAAGGTGAAGGAGAAGGCCGGTGTTATCCGTAGTACCGGTAAACTCCCTGGAAATGCATGCTGTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

345

Amino Acids

39.63

Weight (kDa)

9.96

Isoelectric Point (pI)

72.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 235 - 340 6.1e-25 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 581, 614, 652, 941
AclWI GGATC 2 cut(s) 185, 216
AcoI YGGCCR 1 cut(s) 178
AfaI GTAC 1 cut(s) 1003
AgeI ACCGGT 2 cut(s) 550, 1004
AgsI TTSAA 6 cut(s) 118, 141, 257, 293, 911, 970
AhlI ACTAGT 1 cut(s) 695
AjnI CCWGG 2 cut(s) 45, 1015
AluBI AGCT 9 cut(s) 41, 72, 218, 363, 719, 737, 818, 829, 935
AluI AGCT 9 cut(s) 41, 72, 218, 363, 719, 737, 818, 829, 935
Alw21I GWGCWC 2 cut(s) 610, 937
Alw26I GTCTC 2 cut(s) 401, 489
AlwI GGATC 2 cut(s) 185, 216
AlwNI CAGNNNCTG 1 cut(s) 233
Ama87I CYCGRG 1 cut(s) 163
AoxI GGCC 3 cut(s) 178, 286, 984
ApeKI GCWGC 4 cut(s) 215, 218, 227, 920
AsiGI ACCGGT 2 cut(s) 550, 1004
Asp700I GAANNNNTTC 1 cut(s) 158
AspA2I CCTAGG 1 cut(s) 662
AspS9I GGNCC 1 cut(s) 299
AsuHPI GGTGA 2 cut(s) 630, 985
AvaI CYCGRG 1 cut(s) 163
AvaII GGWCC 1 cut(s) 299
AvrII CCTAGG 1 cut(s) 662
BalI TGGCCA 1 cut(s) 180
BanII GRGCYC 1 cut(s) 937
BauI CACGAG 1 cut(s) 603
BbsI GAAGAC 1 cut(s) 900
Bbv12I GWGCWC 2 cut(s) 610, 937
BbvI GCAGC 4 cut(s) 205, 227, 239, 907
BccI CCATC 2 cut(s) 203, 484
BcgI CGANNNNNNTGC 2 cut(s) 680, 714
BciT130I CCWGG 2 cut(s) 47, 1017
BciVI GTATCC 1 cut(s) 564
BcoDI GTCTC 2 cut(s) 401, 489
BcuI ACTAGT 1 cut(s) 695
BfaI CTAG 5 cut(s) 78, 269, 663, 696, 854
BfmI CTRYAG 2 cut(s) 219, 714
BfuI GTATCC 1 cut(s) 564
BglI GCCNNNNNGGC 1 cut(s) 652
BisI GCNGC 5 cut(s) 216, 219, 228, 653, 921
BlnI CCTAGG 1 cut(s) 662
BlsI GCNGC 5 cut(s) 217, 220, 229, 654, 922
Bme1390I CCNGG 2 cut(s) 47, 1017
Bme18I GGWCC 1 cut(s) 299
BmeT110I CYCGRG 1 cut(s) 163
BmgT120I GGNCC 1 cut(s) 299
BmiI GGNNCC 2 cut(s) 354, 928
BmrFI CCNGG 2 cut(s) 47, 1017
BmsI GCATC 2 cut(s) 43, 712
BpiI GAAGAC 1 cut(s) 900
BpmI CTGGAG 1 cut(s) 945
Bpu10I CCTNAGC 2 cut(s) 584, 936
BsaI GGTCTC 1 cut(s) 489
BsaJI CCNNGG 4 cut(s) 45, 566, 662, 1015
BsaWI WCCGGW 2 cut(s) 550, 1004
Bse118I RCCGGY 3 cut(s) 550, 986, 1004
Bse1I ACTGG 1 cut(s) 149
BseBI CCWGG 2 cut(s) 47, 1017
BseDI CCNNGG 4 cut(s) 45, 566, 662, 1015
BseGI GGATG 2 cut(s) 34, 712
BseMII CTCAG 4 cut(s) 393, 678, 831, 950
BseNI ACTGG 1 cut(s) 149
BseRI GAGGAG 5 cut(s) 539, 612, 615, 618, 877
BseXI GCAGC 4 cut(s) 205, 227, 239, 907
BshFI GGCC 3 cut(s) 180, 288, 986
BshTI ACCGGT 2 cut(s) 550, 1004
BsiHKAI GWGCWC 2 cut(s) 610, 937
BsiHKCI CYCGRG 1 cut(s) 163
BsiSI CCGG 3 cut(s) 551, 987, 1005
BslFI GGGAC 1 cut(s) 424
BsmAI GTCTC 2 cut(s) 401, 489
BsmBI CGTCTC 1 cut(s) 401
BsmFI GGGAC 1 cut(s) 424
BsnI GGCC 3 cut(s) 180, 288, 986
Bso31I GGTCTC 1 cut(s) 489
BsoBI CYCGRG 1 cut(s) 163
Bsp1286I GDGCHC 2 cut(s) 610, 937
Bsp143I GATC 5 cut(s) 190, 208, 415, 593, 750
BspACI CCGC 4 cut(s) 581, 614, 652, 941
BspANI GGCC 3 cut(s) 180, 288, 986
BspCNI CTCAG 4 cut(s) 392, 679, 832, 949
BspLI GGNNCC 2 cut(s) 354, 928
BspMAI CTGCAG 1 cut(s) 223
BspPI GGATC 2 cut(s) 185, 216
BspTNI GGTCTC 1 cut(s) 489
BsrFI RCCGGY 3 cut(s) 550, 986, 1004
BsrI ACTGG 1 cut(s) 149
BssAI RCCGGY 3 cut(s) 550, 986, 1004
BssECI CCNNGG 4 cut(s) 45, 566, 662, 1015
BssMI GATC 5 cut(s) 190, 208, 415, 593, 750
BssSI CACGAG 1 cut(s) 603
BssT1I CCWWGG 1 cut(s) 662
Bst2BI CACGAG 1 cut(s) 603
Bst2UI CCWGG 2 cut(s) 47, 1017
Bst4CI ACNGT 1 cut(s) 339
Bst6I CTCTTC 1 cut(s) 636
BstAPI GCANNNNNTGC 1 cut(s) 233
BstC8I GCNNGC 1 cut(s) 1027
BstDEI CTNAG 6 cut(s) 379, 584, 687, 747, 840, 936
BstDSI CCRYGG 1 cut(s) 566
BstF5I GGATG 2 cut(s) 34, 712
BstKTI GATC 5 cut(s) 193, 211, 418, 596, 753
BstMAI GTCTC 2 cut(s) 401, 489
BstMBI GATC 5 cut(s) 190, 208, 415, 593, 750
BstMWI GCNNNNNNNGC 5 cut(s) 224, 227, 233, 652, 926
BstNI CCWGG 2 cut(s) 47, 1017
BstNSI RCATGY 1 cut(s) 1029
BstSCI CCNGG 2 cut(s) 45, 1015
BstSFI CTRYAG 2 cut(s) 219, 714
BstV1I GCAGC 4 cut(s) 205, 227, 239, 907
BstV2I GAAGAC 1 cut(s) 900
BsuI GTATCC 1 cut(s) 564
BsuRI GGCC 3 cut(s) 180, 288, 986
BtgI CCRYGG 1 cut(s) 566
BtsCI GGATG 2 cut(s) 34, 712
BtsI GCAGTG 1 cut(s) 231
BtsIMutI CAGTG 1 cut(s) 231
Cac8I GCNNGC 1 cut(s) 1027
CaiI CAGNNNCTG 1 cut(s) 233
Cfr10I RCCGGY 3 cut(s) 550, 986, 1004
Cfr13I GGNCC 1 cut(s) 299
Csp6I GTAC 1 cut(s) 1002
CspAI ACCGGT 2 cut(s) 550, 1004
CviAII CATG 4 cut(s) 212, 481, 533, 1026
CviQI GTAC 1 cut(s) 1002
DdeI CTNAG 6 cut(s) 379, 584, 687, 747, 840, 936
DpnI GATC 5 cut(s) 192, 210, 417, 595, 752
DpnII GATC 5 cut(s) 190, 208, 415, 593, 750
EaeI YGGCCR 1 cut(s) 178
Eam1104I CTCTTC 1 cut(s) 636
EarI CTCTTC 1 cut(s) 636
EciI GGCGGA 1 cut(s) 956
Ecl136II GAGCTC 1 cut(s) 935
Eco130I CCWWGG 1 cut(s) 662
Eco24I GRGCYC 1 cut(s) 937
Eco31I GGTCTC 1 cut(s) 489
Eco47I GGWCC 1 cut(s) 299
Eco53kI GAGCTC 1 cut(s) 935
Eco88I CYCGRG 1 cut(s) 163
EcoICRI GAGCTC 1 cut(s) 935
EcoRII CCWGG 2 cut(s) 45, 1015
EcoT14I CCWWGG 1 cut(s) 662
EcoT22I ATGCAT 1 cut(s) 1027
EcoT38I GRGCYC 1 cut(s) 937
ErhI CCWWGG 1 cut(s) 662
Esp3I CGTCTC 1 cut(s) 401
FaeI CATG 4 cut(s) 215, 484, 536, 1029
FaqI GGGAC 1 cut(s) 424
FatI CATG 4 cut(s) 211, 480, 532, 1025
Fnu4HI GCNGC 5 cut(s) 216, 219, 228, 653, 921
FokI GGATG 2 cut(s) 21, 719
FriOI GRGCYC 1 cut(s) 937
Fsp4HI GCNGC 5 cut(s) 216, 219, 228, 653, 921
FspBI CTAG 5 cut(s) 78, 269, 663, 696, 854
GluI GCNGC 5 cut(s) 216, 219, 228, 653, 921
GsuI CTGGAG 1 cut(s) 945
HaeIII GGCC 3 cut(s) 180, 288, 986
HapII CCGG 3 cut(s) 551, 987, 1005
Hin1II CATG 4 cut(s) 215, 484, 536, 1029
HindIII AAGCTT 1 cut(s) 361
HinfI GANTC 5 cut(s) 375, 401, 511, 518, 710
HpaII CCGG 3 cut(s) 551, 987, 1005
HphI GGTGA 2 cut(s) 630, 985
Hpy166II GTNNAC 1 cut(s) 1010
Hpy188I TCNGA 8 cut(s) 200, 406, 523, 559, 598, 688, 841, 1037
Hpy188III TCNNGA 3 cut(s) 163, 369, 515
Hpy8I GTNNAC 1 cut(s) 1010
HpyAV CCTTC 6 cut(s) 147, 312, 651, 816, 970, 976
HpyCH4III ACNGT 1 cut(s) 339
HpyCH4V TGCA 5 cut(s) 215, 221, 227, 880, 1025
HpyF10VI GCNNNNNNNGC 5 cut(s) 224, 227, 233, 652, 926
HpyF3I CTNAG 6 cut(s) 379, 584, 687, 747, 840, 936
Hsp92II CATG 4 cut(s) 215, 484, 536, 1029
Kzo9I GATC 5 cut(s) 190, 208, 415, 593, 750
LmnI GCTCC 3 cut(s) 315, 613, 926
Lsp1109I GCAGC 4 cut(s) 205, 227, 239, 907
LweI GCATC 2 cut(s) 43, 712
MaeI CTAG 5 cut(s) 78, 269, 663, 696, 854
MaeIII GTNAC 1 cut(s) 147
MalI GATC 5 cut(s) 192, 210, 417, 595, 752
MboI GATC 5 cut(s) 190, 208, 415, 593, 750
MhlI GDGCHC 2 cut(s) 610, 937
MlsI TGGCCA 1 cut(s) 180
MluCI AATT 1 cut(s) 54
MluNI TGGCCA 1 cut(s) 180
Mox20I TGGCCA 1 cut(s) 180
Mph1103I ATGCAT 1 cut(s) 1027
MroXI GAANNNNTTC 1 cut(s) 158
MscI TGGCCA 1 cut(s) 180
MseI TTAA 2 cut(s) 11, 773
Msp20I TGGCCA 1 cut(s) 180
MspA1I CMGCKG 2 cut(s) 218, 719
MspI CCGG 3 cut(s) 551, 987, 1005
MspR9I CCNGG 2 cut(s) 47, 1017
MvaI CCWGG 2 cut(s) 47, 1017
MwoI GCNNNNNNNGC 5 cut(s) 224, 227, 233, 652, 926
NdeII GATC 5 cut(s) 190, 208, 415, 593, 750
NlaIII CATG 4 cut(s) 215, 484, 536, 1029
NlaIV GGNNCC 2 cut(s) 354, 928
NsiI ATGCAT 1 cut(s) 1027
NspI RCATGY 1 cut(s) 1029
PaeI GCATGC 1 cut(s) 1029
PaeR7I CTCGAG 1 cut(s) 163
PdmI GAANNNNTTC 1 cut(s) 158
PfeI GAWTC 5 cut(s) 375, 401, 511, 518, 710
PinAI ACCGGT 2 cut(s) 550, 1004
PkrI GCNGC 5 cut(s) 217, 220, 229, 654, 922
Psp124BI GAGCTC 1 cut(s) 937
Psp6I CCWGG 2 cut(s) 45, 1015
PspGI CCWGG 2 cut(s) 45, 1015
PspN4I GGNNCC 2 cut(s) 354, 928
PspPI GGNCC 1 cut(s) 299
PstI CTGCAG 1 cut(s) 223
PstNI CAGNNNCTG 1 cut(s) 233
PvuII CAGCTG 2 cut(s) 218, 719
RsaI GTAC 1 cut(s) 1003
RsaNI GTAC 1 cut(s) 1002
SacI GAGCTC 1 cut(s) 937
SaqAI TTAA 2 cut(s) 11, 773
SatI GCNGC 5 cut(s) 216, 219, 228, 653, 921
Sau3AI GATC 5 cut(s) 190, 208, 415, 593, 750
Sau96I GGNCC 1 cut(s) 299
ScrFI CCNGG 2 cut(s) 47, 1017
SduI GDGCHC 2 cut(s) 610, 937
SfaNI GCATC 2 cut(s) 43, 712
SfcI CTRYAG 2 cut(s) 219, 714
Sfr274I CTCGAG 1 cut(s) 163
SinI GGWCC 1 cut(s) 299
SlaI CTCGAG 1 cut(s) 163
SmlI CTYRAG 1 cut(s) 163
SmoI CTYRAG 1 cut(s) 163
SpeI ACTAGT 1 cut(s) 695
SphI GCATGC 1 cut(s) 1029
Sse9I AATT 1 cut(s) 54
SsiI CCGC 4 cut(s) 581, 614, 652, 941
SspMI CTAG 5 cut(s) 78, 269, 663, 696, 854
SstI GAGCTC 1 cut(s) 937
StyD4I CCNGG 2 cut(s) 45, 1015
StyI CCWWGG 1 cut(s) 662
TaaI ACNGT 1 cut(s) 339
TaqI TCGA 3 cut(s) 164, 700, 820
TasI AATT 1 cut(s) 54
TauI GCSGC 1 cut(s) 655
TfiI GAWTC 5 cut(s) 375, 401, 511, 518, 710
Tru1I TTAA 2 cut(s) 11, 773
Tru9I TTAA 2 cut(s) 11, 773
TscAI CASTG 1 cut(s) 238
TseI GCWGC 4 cut(s) 215, 218, 227, 920
TspDTI ATGAA 3 cut(s) 102, 497, 549
TspGWI ACGGA 2 cut(s) 583, 986
TspRI CASTG 1 cut(s) 238
VpaK11BI GGWCC 1 cut(s) 299
XceI RCATGY 1 cut(s) 1029
XcmI CCANNNNNNNNNTGG 2 cut(s) 202, 487
XhoI CTCGAG 1 cut(s) 163
XmaJI CCTAGG 1 cut(s) 662
XmnI GAANNNNTTC 1 cut(s) 158
XspI CTAG 5 cut(s) 78, 269, 663, 696, 854
Zsp2I ATGCAT 1 cut(s) 1027
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.