AT1G69325

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0004384
Physical Location & Seq
Forward (+)
26063187 .. 26063877
691 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G69325.1

Sequence Viewer

Length: 363 bp
ATGAACGAATCCACAGTGCAACGAGCGAAACCTGAACATATGGCAGCTGTTGTGGATCAATGGAAGGAAACAGAGATAAGCAAATCGAGAAAGAAGTACGAGAAGCTAAGTGAGAAGATTGTGTCATGGGAAGATAAGAAGAGGAAAAAGGCAAAGAGAAAACTTCATAGAACAGAGAGAAGTGTAGAGAAAACAAAGTTGAAGGCGACCCAGAGGTTCAGGGACGAAAATGAACGTATTGAGATTATCGTTGCAAGTGCAAGAGCACATGCGTATGAGAGTCGAATAAAAGAAGAGTTGAAGGTTAAGGAGAAAGCAAACCTCATGAGAACAACTGGTAGGAAACCCTCTACATGCCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

120

Amino Acids

14.24

Weight (kDa)

10.11

Isoelectric Point (pI)

32.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 14 - 117 1.4e-24 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 63
AfaI GTAC 1 cut(s) 98
AgsI TTSAA 2 cut(s) 202, 301
AluBI AGCT 2 cut(s) 47, 106
AluI AGCT 2 cut(s) 47, 106
Alw21I GWGCWC 1 cut(s) 268
AlwI GGATC 1 cut(s) 63
ApeKI GCWGC 1 cut(s) 44
Bbv12I GWGCWC 1 cut(s) 268
BbvI GCAGC 1 cut(s) 56
BisI GCNGC 1 cut(s) 45
BlsI GCNGC 1 cut(s) 46
Bse1I ACTGG 1 cut(s) 340
BseNI ACTGG 1 cut(s) 340
BseXI GCAGC 1 cut(s) 56
BsiHKAI GWGCWC 1 cut(s) 268
BslFI GGGAC 1 cut(s) 236
BsmFI GGGAC 1 cut(s) 236
Bsp1286I GDGCHC 1 cut(s) 268
Bsp143I GATC 1 cut(s) 55
BspHI TCATGA 1 cut(s) 324
BspPI GGATC 1 cut(s) 63
BsrI ACTGG 1 cut(s) 340
BssMI GATC 1 cut(s) 55
Bst4CI ACNGT 1 cut(s) 16
Bst6I CTCTTC 2 cut(s) 134, 288
BstDEI CTNAG 1 cut(s) 107
BstKTI GATC 1 cut(s) 58
BstMBI GATC 1 cut(s) 55
BstNSI RCATGY 2 cut(s) 272, 357
BstV1I GCAGC 1 cut(s) 56
BtsIMutI CAGTG 1 cut(s) 21
CciI TCATGA 1 cut(s) 324
Csp6I GTAC 1 cut(s) 97
CviAII CATG 4 cut(s) 126, 269, 325, 354
CviJI RGCY 2 cut(s) 47, 106
CviKI_1 RGCY 2 cut(s) 47, 106
CviQI GTAC 1 cut(s) 97
DdeI CTNAG 1 cut(s) 107
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
Eam1104I CTCTTC 2 cut(s) 134, 288
EarI CTCTTC 2 cut(s) 134, 288
FaeI CATG 4 cut(s) 129, 272, 328, 357
FaiI YATR 8 cut(s) 39, 41, 127, 168, 270, 276, 326, 355
FaqI GGGAC 1 cut(s) 236
FatI CATG 4 cut(s) 125, 268, 324, 353
FauNDI CATATG 1 cut(s) 39
Fnu4HI GCNGC 1 cut(s) 45
Fsp4HI GCNGC 1 cut(s) 45
GluI GCNGC 1 cut(s) 45
Hin1II CATG 4 cut(s) 129, 272, 328, 357
HinfI GANTC 2 cut(s) 8, 280
Hpy188I TCNGA 1 cut(s) 362
Hpy188III TCNNGA 2 cut(s) 87, 325
HpyAV CCTTC 3 cut(s) 58, 196, 295
HpyCH4III ACNGT 1 cut(s) 16
HpyCH4IV ACGT 1 cut(s) 235
HpyCH4V TGCA 3 cut(s) 19, 254, 260
HpyF3I CTNAG 1 cut(s) 107
HpySE526I ACGT 1 cut(s) 235
Hsp92II CATG 4 cut(s) 129, 272, 328, 357
Kzo9I GATC 1 cut(s) 55
LpnPI CCDG 4 cut(s) 45, 205, 224, 321
Lsp1109I GCAGC 1 cut(s) 56
MaeII ACGT 1 cut(s) 235
MalI GATC 1 cut(s) 57
MboI GATC 1 cut(s) 55
MboII GAAGA 4 cut(s) 127, 143, 151, 305
MhlI GDGCHC 1 cut(s) 268
MlyI GAGTC 1 cut(s) 289
MnlI CCTC 4 cut(s) 135, 207, 332, 358
MseI TTAA 1 cut(s) 306
MslI CAYNNNNRTG 1 cut(s) 273
MspA1I CMGCKG 1 cut(s) 47
NdeI CATATG 1 cut(s) 39
NdeII GATC 1 cut(s) 55
NlaIII CATG 4 cut(s) 129, 272, 328, 357
NspI RCATGY 2 cut(s) 272, 357
PagI TCATGA 1 cut(s) 324
PfeI GAWTC 1 cut(s) 8
PkrI GCNGC 1 cut(s) 46
PleI GAGTC 1 cut(s) 288
PpsI GAGTC 1 cut(s) 288
PvuII CAGCTG 1 cut(s) 47
RsaI GTAC 1 cut(s) 98
RsaNI GTAC 1 cut(s) 97
RseI CAYNNNNRTG 1 cut(s) 273
SaqAI TTAA 1 cut(s) 306
SatI GCNGC 1 cut(s) 45
Sau3AI GATC 1 cut(s) 55
SchI GAGTC 1 cut(s) 289
SduI GDGCHC 1 cut(s) 268
SetI ASST 7 cut(s) 34, 49, 108, 218, 238, 306, 324
SmiMI CAYNNNNRTG 1 cut(s) 273
TaaI ACNGT 1 cut(s) 16
TaiI ACGT 1 cut(s) 238
TaqI TCGA 2 cut(s) 86, 283
TfiI GAWTC 1 cut(s) 8
Tru1I TTAA 1 cut(s) 306
Tru9I TTAA 1 cut(s) 306
TscAI CASTG 1 cut(s) 21
TseI GCWGC 1 cut(s) 44
TspDTI ATGAA 3 cut(s) 17, 155, 246
TspRI CASTG 1 cut(s) 21
XceI RCATGY 2 cut(s) 272, 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.