Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0004384

Physical Location & Seq

Genomic Coordinates Forward (+)

3605559 .. 3606340

Gene Structure 782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g05600.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGCTGTCCTTCCTGACCGTATAAAACCTCAAACTGCACCACCACCACCACCACCACCACCACCACCCCTTCAACCACCATCTATCAAGAGAACTCCAACTTTTGATGATAAACGGTCGAGCAGCGCTGGCGGTGTAAAACCTGAAACTGCAGCACCAAAACCCAATTTGTCTGCCACTACGAAATCCGAAAGCCCTTGGGATGAAACCAAGAAGGCGACTTCAACAGGACCTGGAATAAGGAAAACACAAGCAGATATTTGGGAGGAAACCAAGATTGCTAGACTCAAAGCAAGGTATGAGACGCAAAAAGCCACAATACTCGAATGGGAGAACAAGAAGAAGAAGAAATGCAGAAACCATCTCGATAAAAAACAGCAAAGTGAAGTAGCGGAAAAAAGAGAAAAAGCACTACGAAAGTTCGCCGCAGAGATGGAATATATCAAAGAGATAGCAGAAGGAGCTAGGGCACAGGCAGAGGAGAGGCACAGAAATGGTGTCTTGAAGGTGAAACAAAAGGCAAAAGAAATGAGAAGAACAGGGAAAGCTCCTAAAACATGCTTCTGCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Remorin_C

Protein Analysis

191

Amino Acids

21.41

Weight (kDa)

9.98

Isoelectric Point (pI)

53.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13920 AT1G13920 AT1G13920 AT1G13920 AT1G13920 AT1G13920 AT1G13920 AT1G69325
fragaria_vesca	FvH4_4g30432 FvH4_4g30432 FvH4_4g30432 FvH4_4g30432
malus_domestica	MD13G1065400.v1.1 MD16G1063900.v1.1
prunus_persica	Prupe.1G282700_v2.0.a1
pyrus_communis	pycom13g05770 pycom16g05600
rosa_chinensis	RchiOBHm_Chr4g0438751
rosa_laevigata	RLG00000006332
rosa_multiflora	Rmu_co8425743.1_g000001 Rmu_sc0002505.1_g000008
rosa_roxburghii	Rroxscaffold_5G00379780
rosa_rugosa	Rorug04G0312900 Rorug04G0312900 Rorug04G0313000 Rorug04G0313000
rosa_samantha	Rh4AG363600 Rh4BG375100 Rh4CG389200 Rh4DG369400
rosa_wichuraiana	Rw0G007210 Rw0G016760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	132, 392, 426
AfeI	AGCGCT	1 cut(s)	127
AgsI	TTSAA	3 cut(s)	74, 225, 505
AjnI	CCWGG	1 cut(s)	232
AluBI	AGCT	2 cut(s)	464, 548
AluI	AGCT	2 cut(s)	464, 548
Alw26I	GTCTC	1 cut(s)	296
AlwNI	CAGNNNCTG	1 cut(s)	233
Aor51HI	AGCGCT	1 cut(s)	127
ApeKI	GCWGC	2 cut(s)	123, 152
AspLEI	GCGC	1 cut(s)	128
AspS9I	GGNCC	1 cut(s)	230
AsuHPI	GGTGA	1 cut(s)	520
AvaII	GGWCC	1 cut(s)	230
BaeGI	GKGCMC	1 cut(s)	472
BbvI	GCAGC	2 cut(s)	135, 164
BccI	CCATC	3 cut(s)	88, 369, 427
BciT130I	CCWGG	1 cut(s)	234
BcoDI	GTCTC	1 cut(s)	296
BfaI	CTAG	2 cut(s)	282, 465
BfmI	CTRYAG	1 cut(s)	150
BfoI	RGCGCY	1 cut(s)	129
BisI	GCNGC	3 cut(s)	124, 153, 426
BlsI	GCNGC	3 cut(s)	125, 154, 427
Bme1390I	CCNGG	1 cut(s)	234
Bme18I	GGWCC	1 cut(s)	230
BmgT120I	GGNCC	1 cut(s)	230
BmrFI	CCNGG	1 cut(s)	234
BsaJI	CCNNGG	1 cut(s)	197
BseBI	CCWGG	1 cut(s)	234
BseDI	CCNNGG	1 cut(s)	197
BseGI	GGATG	1 cut(s)	208
BseRI	GAGGAG	1 cut(s)	494
BseSI	GKGCMC	1 cut(s)	472
BseXI	GCAGC	2 cut(s)	135, 164
BsgI	GTGCAG	1 cut(s)	21
Bsh1285I	CGRYCG	1 cut(s)	119
BsiEI	CGRYCG	1 cut(s)	119
BsmAI	GTCTC	1 cut(s)	296
BsmBI	CGTCTC	1 cut(s)	296
Bsp1286I	GDGCHC	1 cut(s)	472
BspACI	CCGC	3 cut(s)	132, 392, 426
BspMAI	CTGCAG	1 cut(s)	154
BssECI	CCNNGG	1 cut(s)	197
BssT1I	CCWWGG	1 cut(s)	197
Bst2UI	CCWGG	1 cut(s)	234
Bst4CI	ACNGT	2 cut(s)	20, 117
BstC8I	GCNNGC	1 cut(s)	130
BstF5I	GGATG	1 cut(s)	208
BstH2I	RGCGCY	1 cut(s)	129
BstHHI	GCGC	1 cut(s)	128
BstMAI	GTCTC	1 cut(s)	296
BstMCI	CGRYCG	1 cut(s)	119
BstMWI	GCNNNNNNNGC	2 cut(s)	129, 461
BstNI	CCWGG	1 cut(s)	234
BstNSI	RCATGY	1 cut(s)	561
BstSCI	CCNGG	1 cut(s)	232
BstSFI	CTRYAG	1 cut(s)	150
BstSLI	GKGCMC	1 cut(s)	472
BstV1I	GCAGC	2 cut(s)	135, 164
BtsCI	GGATG	1 cut(s)	208
Cac8I	GCNNGC	1 cut(s)	130
CaiI	CAGNNNCTG	1 cut(s)	233
CfoI	GCGC	1 cut(s)	128
Cfr13I	GGNCC	1 cut(s)	230
CseI	GACGC	1 cut(s)	313
CviAII	CATG	1 cut(s)	558
CviJI	RGCY	5 cut(s)	5, 195, 314, 464, 548
CviKI_1	RGCY	5 cut(s)	5, 195, 314, 464, 548
Eco130I	CCWWGG	1 cut(s)	197
Eco47I	GGWCC	1 cut(s)	230
Eco47III	AGCGCT	1 cut(s)	127
EcoO109I	RGGNCCY	1 cut(s)	230
EcoRII	CCWGG	1 cut(s)	232
EcoT14I	CCWWGG	1 cut(s)	197
ErhI	CCWWGG	1 cut(s)	197
Esp3I	CGTCTC	1 cut(s)	296
FaeI	CATG	1 cut(s)	561
FaiI	YATR	4 cut(s)	23, 300, 441, 559
FatI	CATG	1 cut(s)	557
Fnu4HI	GCNGC	3 cut(s)	124, 153, 426
FokI	GGATG	1 cut(s)	215
Fsp4HI	GCNGC	3 cut(s)	124, 153, 426
FspBI	CTAG	2 cut(s)	282, 465
GlaI	GCGC	1 cut(s)	127
GluI	GCNGC	3 cut(s)	124, 153, 426
HaeII	RGCGCY	1 cut(s)	129
HgaI	GACGC	1 cut(s)	313
HhaI	GCGC	1 cut(s)	128
Hin1II	CATG	1 cut(s)	561
Hin6I	GCGC	1 cut(s)	126
HinP1I	GCGC	1 cut(s)	126
HinfI	GANTC	1 cut(s)	285
HphI	GGTGA	1 cut(s)	520
Hpy188I	TCNGA	1 cut(s)	190
Hpy188III	TCNNGA	4 cut(s)	14, 88, 365, 502
HpyAV	CCTTC	5 cut(s)	20, 80, 208, 452, 499
HpyCH4III	ACNGT	2 cut(s)	20, 117
HpyCH4V	TGCA	3 cut(s)	38, 152, 354
HpyF10VI	GCNNNNNNNGC	2 cut(s)	129, 461
Hsp92II	CATG	1 cut(s)	561
HspAI	GCGC	1 cut(s)	126
LmnI	GCTCC	2 cut(s)	461, 553
LpnPI	CCDG	8 cut(s)	27, 114, 156, 213, 219, 246, 458, 525
Lsp1109I	GCAGC	2 cut(s)	135, 164
MaeI	CTAG	2 cut(s)	282, 465
MboII	GAAGA	4 cut(s)	352, 355, 358, 546
MhlI	GDGCHC	1 cut(s)	472
MluCI	AATT	1 cut(s)	166
MlyI	GAGTC	1 cut(s)	279
MmeI	TCCRAC	1 cut(s)	122
MnlI	CCTC	4 cut(s)	39, 259, 472, 477
MslI	CAYNNNNRTG	1 cut(s)	492
MspR9I	CCNGG	1 cut(s)	234
MvaI	CCWGG	1 cut(s)	234
MwoI	GCNNNNNNNGC	2 cut(s)	129, 461
NlaIII	CATG	1 cut(s)	561
NspI	RCATGY	1 cut(s)	561
PkrI	GCNGC	3 cut(s)	125, 154, 427
PleI	GAGTC	1 cut(s)	279
PpsI	GAGTC	1 cut(s)	279
PpuMI	RGGWCCY	1 cut(s)	230
Psp5II	RGGWCCY	1 cut(s)	230
Psp6I	CCWGG	1 cut(s)	232
PspGI	CCWGG	1 cut(s)	232
PspPI	GGNCC	1 cut(s)	230
PspPPI	RGGWCCY	1 cut(s)	230
PstI	CTGCAG	1 cut(s)	154
PstNI	CAGNNNCTG	1 cut(s)	233
RseI	CAYNNNNRTG	1 cut(s)	492
SatI	GCNGC	3 cut(s)	124, 153, 426
Sau96I	GGNCC	1 cut(s)	230
SchI	GAGTC	1 cut(s)	279
ScrFI	CCNGG	1 cut(s)	234
SduI	GDGCHC	1 cut(s)	472
SetI	ASST	7 cut(s)	31, 145, 235, 299, 466, 510, 550
SfcI	CTRYAG	1 cut(s)	150
SinI	GGWCC	1 cut(s)	230
SmiMI	CAYNNNNRTG	1 cut(s)	492
Sse9I	AATT	1 cut(s)	166
SsiI	CCGC	3 cut(s)	132, 392, 426
SspMI	CTAG	2 cut(s)	282, 465
StyD4I	CCNGG	1 cut(s)	232
StyI	CCWWGG	1 cut(s)	197
TaaI	ACNGT	2 cut(s)	20, 117
TaqI	TCGA	3 cut(s)	119, 324, 366
TasI	AATT	1 cut(s)	166
TauI	GCSGC	1 cut(s)	428
TseI	GCWGC	2 cut(s)	123, 152
TspDTI	ATGAA	1 cut(s)	219
VpaK11BI	GGWCC	1 cut(s)	230
XceI	RCATGY	1 cut(s)	561
XspI	CTAG	2 cut(s)	282, 465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.