Rw0G007210

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00270
OG0004384
Physical Location & Seq
Forward (+)
81035 .. 82701
1667 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G007210.1

Sequence Viewer

Length: 1029 bp
ATGGAGCCTAAGCAAATGAGTCCCAGCGTCATTGATCGAAGAATACCACCACAGAAAGCTCAATCTTTCAAAGAGAAAAAGAAGACGCAGAACTGGTTCCAGAGACGGTTTTCTGGGCAAATGAGTCAAGATTATGATTCTATCGTTGAAATAGAGCATGCAACTGCAGTGGCAGCTGCCGCATTTGCAGTTAAATCAATCGAAGAATCGGCAGTCTCTGATAAGAAAAGGACAGGCGATGAAACTAGTGACTCTTTGGTCAAGATCAAGAGCAAAAAGGAAGAAACAACAATTTCAAAGCCAGAACCTGGAAGACTTTCCAAACTATTCTCAGGTACAGGTTTAACAAAAAGTACTCAAGAAGATCCAGATAGTAAGGTGCCAATAAGTACTTCTCCTACTTTTCCTAACGACAAGATCCCGGGAAAGACCATCCTTCCTGCTCCCTCTATCAAACGAACTCCAACGTCTGATGCCATCCTTCCTGCTTCGTCTATTAAACAAACTCCAACGTCTGATGCCATCCATCCTGCCCCATCAATGAAAAAAACTCCAACTTTTGCTGATAATACATTGAACAGCACAAGCAGTATAAAACCCGAAACTTCAGCACCAAAACTCAATTTGCCCACCACTATGAAACCTACTGCACCTGCAAATGAAACCAAATCGCAGAGTGCAGCAAGACCTGGAGTGGTAAAGACAAAAGCAGATAAATGGGAGGAGGCTGAGATGGCTAAACTCCAAGAAAGGTATGAGCAGCAAAATGCTACAATACTTTCCTGGGAGAACAAGAAGAAGAAGAAAAGCAAACTTCGGCTGGAGAAAAGAGAGAGTGAAATAGAGAGAAGAAGAGTAAAAGCGCTACAAAAGTACAACAATGAGATGGAATACATCAAACAGATTGCAGAAGGAGCAAGGGCACAGGCAGAGGAGAAGCGTAGGAATAAAGAACTCAAGGTGAAAGAAAAGGCAAATACACTAAGAAGAACAGGGGAAGAAGCTCCTACAACATGTTGCTGCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

342

Amino Acids

38.21

Weight (kDa)

9.69

Isoelectric Point (pI)

63.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 233 - 333 1.1e-27 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 661
AasI GACNNNNNNGTC 1 cut(s) 257
Acc36I ACCTGC 1 cut(s) 661
AccB1I GGYRCC 1 cut(s) 379
AccB7I CCANNNNNTGG 1 cut(s) 308
AciI CCGC 1 cut(s) 180
AclWI GGATC 2 cut(s) 359, 412
AcuI CTGAAG 1 cut(s) 591
AfaI GTAC 4 cut(s) 337, 355, 391, 875
AfeI AGCGCT 1 cut(s) 864
AfiI CCNNNNNNNGG 1 cut(s) 308
AflIII ACRYGT 1 cut(s) 1013
AgsI TTSAA 4 cut(s) 70, 149, 297, 577
AhlI ACTAGT 1 cut(s) 245
AjnI CCWGG 3 cut(s) 307, 688, 782
AjuI GAANNNNNNNTTGG 2 cut(s) 376, 408
AluBI AGCT 3 cut(s) 59, 176, 1004
AluI AGCT 3 cut(s) 59, 176, 1004
Alw26I GTCTC 2 cut(s) 97, 220
AlwI GGATC 2 cut(s) 359, 412
AlwNI CAGNNNCTG 2 cut(s) 218, 308
Ama87I CYCGRG 1 cut(s) 421
Aor51HI AGCGCT 1 cut(s) 864
ApeKI GCWGC 5 cut(s) 173, 176, 680, 760, 1020
Asp700I GAANNNNTTC 2 cut(s) 95, 316
AspLEI GCGC 1 cut(s) 865
AsuC2I CCSGG 2 cut(s) 422, 423
AsuHPI GGTGA 1 cut(s) 973
AvaI CYCGRG 1 cut(s) 421
BaeGI GKGCMC 1 cut(s) 925
BanI GGYRCC 1 cut(s) 379
BbsI GAAGAC 2 cut(s) 89, 319
BbvI GCAGC 5 cut(s) 163, 185, 692, 772, 1007
BccI CCATC 7 cut(s) 440, 485, 530, 534, 544, 727, 880
BciT130I CCWGG 3 cut(s) 309, 690, 784
BcnI CCSGG 2 cut(s) 422, 423
BcoDI GTCTC 2 cut(s) 97, 220
BcuI ACTAGT 1 cut(s) 245
BfaI CTAG 1 cut(s) 246
BfmI CTRYAG 1 cut(s) 165
BfoI RGCGCY 1 cut(s) 866
BfuAI ACCTGC 1 cut(s) 661
BisI GCNGC 6 cut(s) 174, 177, 180, 681, 761, 1021
BlsI GCNGC 6 cut(s) 175, 178, 181, 682, 762, 1022
BmcAI AGTACT 2 cut(s) 355, 391
Bme1390I CCNGG 5 cut(s) 309, 422, 423, 690, 784
BmeT110I CYCGRG 1 cut(s) 421
BmiI GGNNCC 3 cut(s) 6, 98, 381
BmrFI CCNGG 5 cut(s) 309, 422, 423, 690, 784
BmsI GCATC 2 cut(s) 463, 508
BpiI GAAGAC 2 cut(s) 89, 319
BpmI CTGGAG 2 cut(s) 711, 842
Bpu10I CCTNAGC 1 cut(s) 9
BpuEI CTTGAG 2 cut(s) 342, 941
BpuMI CCSGG 2 cut(s) 422, 423
BsaJI CCNNGG 2 cut(s) 421, 783
Bsc4I CCNNNNNNNGG 1 cut(s) 308
Bse1I ACTGG 1 cut(s) 98
BseBI CCWGG 3 cut(s) 309, 690, 784
BseDI CCNNGG 2 cut(s) 421, 783
BseGI GGATG 4 cut(s) 432, 477, 522, 526
BseLI CCNNNNNNNGG 1 cut(s) 308
BseMII CTCAG 2 cut(s) 345, 720
BseNI ACTGG 1 cut(s) 98
BseRI GAGGAG 2 cut(s) 737, 947
BseSI GKGCMC 1 cut(s) 925
BseXI GCAGC 5 cut(s) 163, 185, 692, 772, 1007
BseYI CCCAGC 1 cut(s) 23
BsgI GTGCAG 2 cut(s) 633, 699
BshNI GGYRCC 1 cut(s) 379
BsiHKCI CYCGRG 1 cut(s) 421
BsiSI CCGG 1 cut(s) 422
BslFI GGGAC 1 cut(s) 6
BslI CCNNNNNNNGG 1 cut(s) 308
BsmAI GTCTC 2 cut(s) 97, 220
BsmBI CGTCTC 1 cut(s) 97
BsmFI GGGAC 1 cut(s) 6
BsoBI CYCGRG 1 cut(s) 421
Bsp1286I GDGCHC 1 cut(s) 925
Bsp143I GATC 4 cut(s) 34, 264, 364, 417
BspACI CCGC 1 cut(s) 180
BspCNI CTCAG 2 cut(s) 344, 721
BspLI GGNNCC 3 cut(s) 6, 98, 381
BspMAI CTGCAG 1 cut(s) 169
BspMI ACCTGC 1 cut(s) 661
BspPI GGATC 2 cut(s) 359, 412
BspT107I GGYRCC 1 cut(s) 379
BsrI ACTGG 1 cut(s) 98
BssECI CCNNGG 2 cut(s) 421, 783
BssMI GATC 4 cut(s) 34, 264, 364, 417
Bst2UI CCWGG 3 cut(s) 309, 690, 784
Bst4CI ACNGT 1 cut(s) 108
Bst6I CTCTTC 1 cut(s) 847
BstC8I GCNNGC 1 cut(s) 159
BstDEI CTNAG 4 cut(s) 9, 331, 729, 983
BstF5I GGATG 4 cut(s) 432, 477, 522, 526
BstH2I RGCGCY 1 cut(s) 866
BstHHI GCGC 1 cut(s) 865
BstKTI GATC 4 cut(s) 37, 267, 367, 420
BstMAI GTCTC 2 cut(s) 97, 220
BstMBI GATC 4 cut(s) 34, 264, 364, 417
BstMWI GCNNNNNNNGC 5 cut(s) 173, 179, 185, 734, 914
BstNI CCWGG 3 cut(s) 309, 690, 784
BstNSI RCATGY 2 cut(s) 161, 1017
BstSCI CCNGG 5 cut(s) 307, 420, 421, 688, 782
BstSFI CTRYAG 1 cut(s) 165
BstSLI GKGCMC 1 cut(s) 925
BstV1I GCAGC 5 cut(s) 163, 185, 692, 772, 1007
BstV2I GAAGAC 2 cut(s) 89, 319
BstX2I RGATCY 2 cut(s) 364, 417
BstYI RGATCY 2 cut(s) 364, 417
BtgZI GCGATG 1 cut(s) 252
BtsCI GGATG 4 cut(s) 432, 477, 522, 526
BtsI GCAGTG 1 cut(s) 174
BtsIMutI CAGTG 1 cut(s) 174
BveI ACCTGC 1 cut(s) 661
Cac8I GCNNGC 1 cut(s) 159
CaiI CAGNNNCTG 2 cut(s) 218, 308
CfoI GCGC 1 cut(s) 865
Cfr9I CCCGGG 1 cut(s) 421
CseI GACGC 2 cut(s) 16, 94
Csp6I GTAC 4 cut(s) 336, 354, 390, 874
CspCI CAANNNNNGTGG 2 cut(s) 150, 185
CviAII CATG 2 cut(s) 158, 1014
CviJI RGCY 8 cut(s) 7, 59, 176, 301, 728, 737, 820, 1004
CviKI_1 RGCY 8 cut(s) 7, 59, 176, 301, 728, 737, 820, 1004
CviQI GTAC 4 cut(s) 336, 354, 390, 874
DdeI CTNAG 4 cut(s) 9, 331, 729, 983
DpnI GATC 4 cut(s) 36, 266, 366, 419
DpnII GATC 4 cut(s) 34, 264, 364, 417
DrdI GACNNNNNNGTC 1 cut(s) 257
DseDI GACNNNNNNGTC 1 cut(s) 257
Eam1104I CTCTTC 1 cut(s) 847
EarI CTCTTC 1 cut(s) 847
Eco47III AGCGCT 1 cut(s) 864
Eco57I CTGAAG 1 cut(s) 591
Eco88I CYCGRG 1 cut(s) 421
EcoRII CCWGG 3 cut(s) 307, 688, 782
Esp3I CGTCTC 1 cut(s) 97
FaeI CATG 2 cut(s) 161, 1017
FaiI YATR 6 cut(s) 135, 159, 593, 638, 756, 1015
FaqI GGGAC 1 cut(s) 6
FatI CATG 2 cut(s) 157, 1013
Fnu4HI GCNGC 6 cut(s) 174, 177, 180, 681, 761, 1021
FokI GGATG 4 cut(s) 419, 464, 509, 513
Fsp4HI GCNGC 6 cut(s) 174, 177, 180, 681, 761, 1021
FspBI CTAG 1 cut(s) 246
GlaI GCGC 1 cut(s) 864
GluI GCNGC 6 cut(s) 174, 177, 180, 681, 761, 1021
GsaI CCCAGC 1 cut(s) 27
GsuI CTGGAG 2 cut(s) 711, 842
HaeII RGCGCY 1 cut(s) 866
HapII CCGG 1 cut(s) 422
HgaI GACGC 2 cut(s) 16, 94
HhaI GCGC 1 cut(s) 865
Hin1II CATG 2 cut(s) 161, 1017
Hin6I GCGC 1 cut(s) 863
HinP1I GCGC 1 cut(s) 863
HinfI GANTC 5 cut(s) 19, 124, 137, 206, 251
HpaII CCGG 1 cut(s) 422
HphI GGTGA 1 cut(s) 973
Hpy188I TCNGA 3 cut(s) 220, 472, 517
Hpy188III TCNNGA 6 cut(s) 100, 128, 262, 268, 359, 368
HpyAV CCTTC 3 cut(s) 446, 491, 905
HpyCH4III ACNGT 1 cut(s) 108
HpyCH4IV ACGT 2 cut(s) 467, 512
HpyCH4V TGCA 7 cut(s) 161, 167, 188, 650, 656, 680, 908
HpyF10VI GCNNNNNNNGC 5 cut(s) 173, 179, 185, 734, 914
HpyF3I CTNAG 4 cut(s) 9, 331, 729, 983
HpySE526I ACGT 2 cut(s) 467, 512
Hsp92II CATG 2 cut(s) 161, 1017
HspAI GCGC 1 cut(s) 863
Kzo9I GATC 4 cut(s) 34, 264, 364, 417
LmnI GCTCC 4 cut(s) 4, 448, 914, 1009
Lsp1109I GCAGC 5 cut(s) 163, 185, 692, 772, 1007
LweI GCATC 2 cut(s) 463, 508
MaeI CTAG 1 cut(s) 246
MaeII ACGT 2 cut(s) 467, 512
MaeIII GTNAC 1 cut(s) 248
MalI GATC 4 cut(s) 36, 266, 366, 419
MboI GATC 4 cut(s) 34, 264, 364, 417
MflI RGATCY 2 cut(s) 364, 417
MhlI GDGCHC 1 cut(s) 925
MluCI AATT 2 cut(s) 291, 622
MlyI GAGTC 3 cut(s) 28, 133, 245
MmeI TCCRAC 3 cut(s) 488, 533, 578
MnlI CCTC 4 cut(s) 457, 715, 718, 925
MroXI GAANNNNTTC 2 cut(s) 95, 316
MseI TTAA 3 cut(s) 192, 344, 498
MslI CAYNNNNRTG 1 cut(s) 635
MspA1I CMGCKG 1 cut(s) 176
MspI CCGG 1 cut(s) 422
MspR9I CCNGG 5 cut(s) 309, 422, 423, 690, 784
MvaI CCWGG 3 cut(s) 309, 690, 784
MwoI GCNNNNNNNGC 5 cut(s) 173, 179, 185, 734, 914
NciI CCSGG 2 cut(s) 422, 423
NdeII GATC 4 cut(s) 34, 264, 364, 417
NlaIII CATG 2 cut(s) 161, 1017
NlaIV GGNNCC 3 cut(s) 6, 98, 381
NmuCI GTSAC 1 cut(s) 248
NspI RCATGY 2 cut(s) 161, 1017
PaeI GCATGC 1 cut(s) 161
PaqCI CACCTGC 1 cut(s) 661
PciI ACATGT 1 cut(s) 1013
PdmI GAANNNNTTC 2 cut(s) 95, 316
PfeI GAWTC 2 cut(s) 137, 206
PflMI CCANNNNNTGG 1 cut(s) 308
PkrI GCNGC 6 cut(s) 175, 178, 181, 682, 762, 1022
PleI GAGTC 3 cut(s) 27, 132, 245
PpsI GAGTC 3 cut(s) 27, 132, 245
PscI ACATGT 1 cut(s) 1013
Psp6I CCWGG 3 cut(s) 307, 688, 782
PspFI CCCAGC 1 cut(s) 23
PspGI CCWGG 3 cut(s) 307, 688, 782
PspN4I GGNNCC 3 cut(s) 6, 98, 381
PstI CTGCAG 1 cut(s) 169
PstNI CAGNNNCTG 2 cut(s) 218, 308
PsuI RGATCY 2 cut(s) 364, 417
PvuII CAGCTG 1 cut(s) 176
RsaI GTAC 4 cut(s) 337, 355, 391, 875
RsaNI GTAC 4 cut(s) 336, 354, 390, 874
RseI CAYNNNNRTG 1 cut(s) 635
SaqAI TTAA 3 cut(s) 192, 344, 498
SatI GCNGC 6 cut(s) 174, 177, 180, 681, 761, 1021
Sau3AI GATC 4 cut(s) 34, 264, 364, 417
ScaI AGTACT 2 cut(s) 355, 391
SchI GAGTC 3 cut(s) 28, 133, 245
ScrFI CCNGG 5 cut(s) 309, 422, 423, 690, 784
SduI GDGCHC 1 cut(s) 925
SfaNI GCATC 2 cut(s) 463, 508
SfcI CTRYAG 1 cut(s) 165
SmaI CCCGGG 1 cut(s) 423
SmiMI CAYNNNNRTG 1 cut(s) 635
SmlI CTYRAG 2 cut(s) 357, 956
SmoI CTYRAG 2 cut(s) 357, 956
SpeI ACTAGT 1 cut(s) 245
SphI GCATGC 1 cut(s) 161
Sse9I AATT 2 cut(s) 291, 622
SsiI CCGC 1 cut(s) 180
SspMI CTAG 1 cut(s) 246
StyD4I CCNGG 5 cut(s) 307, 420, 421, 688, 782
TaaI ACNGT 1 cut(s) 108
TaiI ACGT 2 cut(s) 470, 515
TaqI TCGA 2 cut(s) 37, 201
TasI AATT 2 cut(s) 291, 622
TatI WGTACW 3 cut(s) 353, 389, 873
TauI GCSGC 1 cut(s) 182
TfiI GAWTC 2 cut(s) 137, 206
Tru1I TTAA 3 cut(s) 192, 344, 498
Tru9I TTAA 3 cut(s) 192, 344, 498
TscAI CASTG 1 cut(s) 174
TseFI GTSAC 1 cut(s) 248
TseI GCWGC 5 cut(s) 173, 176, 680, 760, 1020
Tsp45I GTSAC 1 cut(s) 248
TspDTI ATGAA 4 cut(s) 255, 557, 653, 675
TspMI CCCGGG 1 cut(s) 421
TspRI CASTG 1 cut(s) 174
Van91I CCANNNNNTGG 1 cut(s) 308
XceI RCATGY 2 cut(s) 161, 1017
XmaI CCCGGG 1 cut(s) 421
XmnI GAANNNNTTC 2 cut(s) 95, 316
XspI CTAG 1 cut(s) 246
ZrmI AGTACT 2 cut(s) 355, 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.