Rh4CG389200

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0004384
Physical Location & Seq
Forward (+)
64009978 .. 64011774
1797 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG389200.1

Sequence Viewer

Length: 1068 bp
ATGGAGCCTAAGCAAATGAGGGTGAGATTTTCTGGTGTAAATCAGGTGAAAACAGAAGAGTCCGGCAGCGTCATTGATCGAAGAATACCACCACAGAAAACTCAATCTTTCAAAGAGAAAAAGAAGACGCAGAACTGGTTCCAGAGACGGTTTTCTGGGCAAATGAGTCAAGATTATGATTCTATCGTTGAAATAGAGCATGCAACCGCAGTGGCAGCTGCCGCATTTGCAGTTAAATCAATCGAAGAATCGGCAGTCTCTGACAAGAAAAGGACAGGCGATGAAACTAGTGACTCTTTGGTGAAGATCAAGAGCAAAAAGGAAGAAACAACGATTTCAAAGCCAGAACCTGGAAGACTTTCCAAACTATTCTCAGGTGCAGGTTTAACAAAAAGTACTCAAGAAGATCCAGATAGTAAGGTGCCAATAAGTACTTCTCCTACTTTTCCAAACGACAAGATCCCGGGAAAGACCATCCTTCCTGCTCCCTCTATCAAACGAACTCCAACGTCTGATGCCATCCTTCCTGCTTCTATCAAACGAACTCCAACGTCTGATGCCATCCATCCTGCCCCATCAATGAAAAAAACTCCAACTTTTGCTGATAAGCCATTGAACAGCACAAGCAGTATAAAACCCGAAACTTCAGCACCAAAACTCAATTTGCCCACCACTATGAAACCTGCTGCACCTGCAAATGAAACCAAAGGGCAGAGTGCAGCAAGACCTGGAGTGGTAAAGACAAAAGCAGATAAATGGGAGGAGGCTGAGATGGCTAAACTCAAAGAAAGGTATGAGCGGCAAAATGCTACAATACTTTCCTGGGAGAACAAGAAGAAGAAGAAAAGCAAACTTCGGCTGGAGAAAAGAGAGAGTGAAATAGAGAGAAGAAGAGTAAAAGCGCTACAAAAGTACAACAATGAGATGGAATTTATCAAACAGATTGCAGAAGGAGCAAGGGCACAGGCAGAGGAGAAGCGTAGGAATAAAGAACTCAAGGTGAAAGAAAAGGCAAATACACTAAGAAGAACAGGGGAAGAAGCTCCTACAACATGTTGCTGCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

355

Amino Acids

39.7

Weight (kDa)

9.84

Isoelectric Point (pI)

56.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 246 - 346 6.8e-28 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 700
Acc36I ACCTGC 3 cut(s) 371, 691, 700
AccB1I GGYRCC 1 cut(s) 421
AccB7I CCANNNNNTGG 1 cut(s) 350
AccBSI CCGCTC 1 cut(s) 799
AciI CCGC 3 cut(s) 207, 222, 799
AclWI GGATC 2 cut(s) 401, 454
AcsI RAATTY 1 cut(s) 929
AcuI CTGAAG 1 cut(s) 630
AfaI GTAC 3 cut(s) 397, 433, 914
AfeI AGCGCT 1 cut(s) 903
AfiI CCNNNNNNNGG 1 cut(s) 350
AflIII ACRYGT 1 cut(s) 1052
AgsI TTSAA 4 cut(s) 112, 191, 339, 616
AhlI ACTAGT 1 cut(s) 287
AjnI CCWGG 3 cut(s) 349, 727, 821
AjuI GAANNNNNNNTTGG 2 cut(s) 418, 450
AluBI AGCT 2 cut(s) 218, 1043
AluI AGCT 2 cut(s) 218, 1043
Alw26I GTCTC 2 cut(s) 139, 262
AlwI GGATC 2 cut(s) 401, 454
AlwNI CAGNNNCTG 2 cut(s) 260, 350
Ama87I CYCGRG 1 cut(s) 463
Aor51HI AGCGCT 1 cut(s) 903
ApeKI GCWGC 6 cut(s) 66, 215, 218, 686, 719, 1059
ApoI RAATTY 1 cut(s) 929
Asp700I GAANNNNTTC 2 cut(s) 137, 358
AspLEI GCGC 1 cut(s) 904
AsuC2I CCSGG 2 cut(s) 464, 465
AsuHPI GGTGA 4 cut(s) 34, 58, 313, 1012
AvaI CYCGRG 1 cut(s) 463
BaeGI GKGCMC 1 cut(s) 964
BanI GGYRCC 1 cut(s) 421
BbsI GAAGAC 2 cut(s) 131, 361
BbvI GCAGC 6 cut(s) 78, 205, 227, 673, 731, 1046
BccI CCATC 7 cut(s) 482, 527, 569, 573, 583, 766, 919
BciT130I CCWGG 3 cut(s) 351, 729, 823
BcnI CCSGG 2 cut(s) 464, 465
BcoDI GTCTC 2 cut(s) 139, 262
BcuI ACTAGT 1 cut(s) 287
BfaI CTAG 1 cut(s) 288
BfoI RGCGCY 1 cut(s) 905
BfuAI ACCTGC 3 cut(s) 371, 691, 700
BisI GCNGC 8 cut(s) 67, 216, 219, 222, 687, 720, 800, 1060
BlsI GCNGC 8 cut(s) 68, 217, 220, 223, 688, 721, 801, 1061
BmcAI AGTACT 2 cut(s) 397, 433
Bme1390I CCNGG 5 cut(s) 351, 464, 465, 729, 823
BmeT110I CYCGRG 1 cut(s) 463
BmiI GGNNCC 3 cut(s) 6, 140, 423
BmrFI CCNGG 5 cut(s) 351, 464, 465, 729, 823
BmsI GCATC 2 cut(s) 505, 547
BpiI GAAGAC 2 cut(s) 131, 361
BpmI CTGGAG 2 cut(s) 750, 881
Bpu10I CCTNAGC 1 cut(s) 9
BpuEI CTTGAG 2 cut(s) 384, 980
BpuMI CCSGG 2 cut(s) 464, 465
BsaJI CCNNGG 2 cut(s) 463, 822
Bsc4I CCNNNNNNNGG 1 cut(s) 350
Bse1I ACTGG 1 cut(s) 140
BseBI CCWGG 3 cut(s) 351, 729, 823
BseDI CCNNGG 2 cut(s) 463, 822
BseGI GGATG 4 cut(s) 474, 519, 561, 565
BseLI CCNNNNNNNGG 1 cut(s) 350
BseMII CTCAG 2 cut(s) 387, 759
BseNI ACTGG 1 cut(s) 140
BseRI GAGGAG 2 cut(s) 776, 986
BseSI GKGCMC 1 cut(s) 964
BseXI GCAGC 6 cut(s) 78, 205, 227, 673, 731, 1046
BsgI GTGCAG 3 cut(s) 399, 672, 738
BshNI GGYRCC 1 cut(s) 421
BsiHKCI CYCGRG 1 cut(s) 463
BsiSI CCGG 2 cut(s) 63, 464
BslI CCNNNNNNNGG 1 cut(s) 350
BsmAI GTCTC 2 cut(s) 139, 262
BsmBI CGTCTC 1 cut(s) 139
BsoBI CYCGRG 1 cut(s) 463
Bsp1286I GDGCHC 1 cut(s) 964
Bsp143I GATC 4 cut(s) 76, 306, 406, 459
BspACI CCGC 3 cut(s) 207, 222, 799
BspCNI CTCAG 2 cut(s) 386, 760
BspLI GGNNCC 3 cut(s) 6, 140, 423
BspMI ACCTGC 3 cut(s) 371, 691, 700
BspPI GGATC 2 cut(s) 401, 454
BspT107I GGYRCC 1 cut(s) 421
BsrBI CCGCTC 1 cut(s) 799
BsrI ACTGG 1 cut(s) 140
BssECI CCNNGG 2 cut(s) 463, 822
BssMI GATC 4 cut(s) 76, 306, 406, 459
Bst2UI CCWGG 3 cut(s) 351, 729, 823
Bst4CI ACNGT 1 cut(s) 150
Bst6I CTCTTC 2 cut(s) 51, 886
BstC8I GCNNGC 1 cut(s) 201
BstDEI CTNAG 4 cut(s) 9, 373, 768, 1022
BstF5I GGATG 4 cut(s) 474, 519, 561, 565
BstH2I RGCGCY 1 cut(s) 905
BstHHI GCGC 1 cut(s) 904
BstKTI GATC 4 cut(s) 79, 309, 409, 462
BstMAI GTCTC 2 cut(s) 139, 262
BstMBI GATC 4 cut(s) 76, 306, 406, 459
BstMWI GCNNNNNNNGC 6 cut(s) 215, 221, 227, 692, 773, 953
BstNI CCWGG 3 cut(s) 351, 729, 823
BstNSI RCATGY 2 cut(s) 203, 1056
BstSCI CCNGG 5 cut(s) 349, 462, 463, 727, 821
BstSLI GKGCMC 1 cut(s) 964
BstV1I GCAGC 6 cut(s) 78, 205, 227, 673, 731, 1046
BstV2I GAAGAC 2 cut(s) 131, 361
BstX2I RGATCY 2 cut(s) 406, 459
BstYI RGATCY 2 cut(s) 406, 459
BtgZI GCGATG 1 cut(s) 294
BtsCI GGATG 4 cut(s) 474, 519, 561, 565
BtsI GCAGTG 1 cut(s) 216
BtsIMutI CAGTG 1 cut(s) 216
BveI ACCTGC 3 cut(s) 371, 691, 700
Cac8I GCNNGC 1 cut(s) 201
CaiI CAGNNNCTG 2 cut(s) 260, 350
CfoI GCGC 1 cut(s) 904
Cfr9I CCCGGG 1 cut(s) 463
CseI GACGC 2 cut(s) 58, 136
Csp6I GTAC 3 cut(s) 396, 432, 913
CspCI CAANNNNNGTGG 2 cut(s) 192, 227
CviAII CATG 2 cut(s) 200, 1053
CviJI RGCY 8 cut(s) 7, 218, 343, 610, 767, 776, 859, 1043
CviKI_1 RGCY 8 cut(s) 7, 218, 343, 610, 767, 776, 859, 1043
CviQI GTAC 3 cut(s) 396, 432, 913
DdeI CTNAG 4 cut(s) 9, 373, 768, 1022
DpnI GATC 4 cut(s) 78, 308, 408, 461
DpnII GATC 4 cut(s) 76, 306, 406, 459
Eam1104I CTCTTC 2 cut(s) 51, 886
EarI CTCTTC 2 cut(s) 51, 886
Eco47III AGCGCT 1 cut(s) 903
Eco57I CTGAAG 1 cut(s) 630
Eco88I CYCGRG 1 cut(s) 463
EcoRII CCWGG 3 cut(s) 349, 727, 821
Esp3I CGTCTC 1 cut(s) 139
FaeI CATG 2 cut(s) 203, 1056
FaiI YATR 6 cut(s) 177, 201, 632, 677, 795, 1054
FatI CATG 2 cut(s) 199, 1052
Fnu4HI GCNGC 8 cut(s) 67, 216, 219, 222, 687, 720, 800, 1060
FokI GGATG 4 cut(s) 461, 506, 548, 552
Fsp4HI GCNGC 8 cut(s) 67, 216, 219, 222, 687, 720, 800, 1060
FspBI CTAG 1 cut(s) 288
GlaI GCGC 1 cut(s) 903
GluI GCNGC 8 cut(s) 67, 216, 219, 222, 687, 720, 800, 1060
GsuI CTGGAG 2 cut(s) 750, 881
HaeII RGCGCY 1 cut(s) 905
HapII CCGG 2 cut(s) 63, 464
HgaI GACGC 2 cut(s) 58, 136
HhaI GCGC 1 cut(s) 904
Hin1II CATG 2 cut(s) 203, 1056
Hin6I GCGC 1 cut(s) 902
HinP1I GCGC 1 cut(s) 902
HinfI GANTC 5 cut(s) 59, 166, 179, 248, 293
HpaII CCGG 2 cut(s) 63, 464
HphI GGTGA 4 cut(s) 34, 58, 313, 1012
Hpy188I TCNGA 3 cut(s) 262, 514, 556
Hpy188III TCNNGA 5 cut(s) 142, 170, 310, 401, 410
HpyAV CCTTC 3 cut(s) 488, 533, 944
HpyCH4III ACNGT 1 cut(s) 150
HpyCH4IV ACGT 2 cut(s) 509, 551
HpyCH4V TGCA 7 cut(s) 203, 230, 380, 689, 695, 719, 947
HpyF10VI GCNNNNNNNGC 6 cut(s) 215, 221, 227, 692, 773, 953
HpyF3I CTNAG 4 cut(s) 9, 373, 768, 1022
HpySE526I ACGT 2 cut(s) 509, 551
Hsp92II CATG 2 cut(s) 203, 1056
HspAI GCGC 1 cut(s) 902
Kzo9I GATC 4 cut(s) 76, 306, 406, 459
LmnI GCTCC 4 cut(s) 4, 490, 953, 1048
Lsp1109I GCAGC 6 cut(s) 78, 205, 227, 673, 731, 1046
LweI GCATC 2 cut(s) 505, 547
MaeI CTAG 1 cut(s) 288
MaeII ACGT 2 cut(s) 509, 551
MaeIII GTNAC 1 cut(s) 290
MalI GATC 4 cut(s) 78, 308, 408, 461
MbiI CCGCTC 1 cut(s) 799
MboI GATC 4 cut(s) 76, 306, 406, 459
MflI RGATCY 2 cut(s) 406, 459
MhlI GDGCHC 1 cut(s) 964
MluCI AATT 2 cut(s) 661, 929
MlyI GAGTC 3 cut(s) 68, 175, 287
MmeI TCCRAC 3 cut(s) 530, 572, 617
MnlI CCTC 5 cut(s) 12, 499, 754, 757, 964
MroXI GAANNNNTTC 2 cut(s) 137, 358
MseI TTAA 2 cut(s) 234, 386
MslI CAYNNNNRTG 1 cut(s) 674
MspA1I CMGCKG 1 cut(s) 218
MspI CCGG 2 cut(s) 63, 464
MspR9I CCNGG 5 cut(s) 351, 464, 465, 729, 823
MvaI CCWGG 3 cut(s) 351, 729, 823
MwoI GCNNNNNNNGC 6 cut(s) 215, 221, 227, 692, 773, 953
NciI CCSGG 2 cut(s) 464, 465
NdeII GATC 4 cut(s) 76, 306, 406, 459
NlaIII CATG 2 cut(s) 203, 1056
NlaIV GGNNCC 3 cut(s) 6, 140, 423
NmuCI GTSAC 1 cut(s) 290
NspI RCATGY 2 cut(s) 203, 1056
PaeI GCATGC 1 cut(s) 203
PaqCI CACCTGC 1 cut(s) 700
PciI ACATGT 1 cut(s) 1052
PdmI GAANNNNTTC 2 cut(s) 137, 358
PfeI GAWTC 2 cut(s) 179, 248
PflMI CCANNNNNTGG 1 cut(s) 350
PkrI GCNGC 8 cut(s) 68, 217, 220, 223, 688, 721, 801, 1061
PleI GAGTC 3 cut(s) 67, 174, 287
PpsI GAGTC 3 cut(s) 67, 174, 287
PscI ACATGT 1 cut(s) 1052
Psp6I CCWGG 3 cut(s) 349, 727, 821
PspGI CCWGG 3 cut(s) 349, 727, 821
PspN4I GGNNCC 3 cut(s) 6, 140, 423
PstNI CAGNNNCTG 2 cut(s) 260, 350
PsuI RGATCY 2 cut(s) 406, 459
PvuII CAGCTG 1 cut(s) 218
RsaI GTAC 3 cut(s) 397, 433, 914
RsaNI GTAC 3 cut(s) 396, 432, 913
RseI CAYNNNNRTG 1 cut(s) 674
SaqAI TTAA 2 cut(s) 234, 386
SatI GCNGC 8 cut(s) 67, 216, 219, 222, 687, 720, 800, 1060
Sau3AI GATC 4 cut(s) 76, 306, 406, 459
ScaI AGTACT 2 cut(s) 397, 433
SchI GAGTC 3 cut(s) 68, 175, 287
ScrFI CCNGG 5 cut(s) 351, 464, 465, 729, 823
SduI GDGCHC 1 cut(s) 964
SfaNI GCATC 2 cut(s) 505, 547
SmaI CCCGGG 1 cut(s) 465
SmiMI CAYNNNNRTG 1 cut(s) 674
SmlI CTYRAG 2 cut(s) 399, 995
SmoI CTYRAG 2 cut(s) 399, 995
SpeI ACTAGT 1 cut(s) 287
SphI GCATGC 1 cut(s) 203
Sse9I AATT 2 cut(s) 661, 929
SsiI CCGC 3 cut(s) 207, 222, 799
SspMI CTAG 1 cut(s) 288
StyD4I CCNGG 5 cut(s) 349, 462, 463, 727, 821
TaaI ACNGT 1 cut(s) 150
TaiI ACGT 2 cut(s) 512, 554
TaqI TCGA 2 cut(s) 79, 243
TasI AATT 2 cut(s) 661, 929
TatI WGTACW 3 cut(s) 395, 431, 912
TauI GCSGC 2 cut(s) 224, 802
TfiI GAWTC 2 cut(s) 179, 248
Tru1I TTAA 2 cut(s) 234, 386
Tru9I TTAA 2 cut(s) 234, 386
TscAI CASTG 1 cut(s) 216
TseFI GTSAC 1 cut(s) 290
TseI GCWGC 6 cut(s) 66, 215, 218, 686, 719, 1059
Tsp45I GTSAC 1 cut(s) 290
TspDTI ATGAA 4 cut(s) 297, 596, 692, 714
TspMI CCCGGG 1 cut(s) 463
TspRI CASTG 1 cut(s) 216
Van91I CCANNNNNTGG 1 cut(s) 350
XapI RAATTY 1 cut(s) 929
XceI RCATGY 2 cut(s) 203, 1056
XmaI CCCGGG 1 cut(s) 463
XmnI GAANNNNTTC 2 cut(s) 137, 358
XspI CTAG 1 cut(s) 288
ZrmI AGTACT 2 cut(s) 397, 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.