Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0004384

Physical Location & Seq

Genomic Coordinates Forward (+)

3800233 .. 3801631

Gene Structure 1399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g05770.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGAAGTTAACCAAATGAGGGTGAGAATTTCCGGCGTAGGACAAGAGAAGACTGAAGAGTCAGGCAGCATCTACGGCCGAAGAATACCGCCGCAGAAAACTGAGTCTTTCAAAGAGAAAAGGAAGACCCAGAACTGGTTCCAGAGACGGCTCTCAGGACAAACGAGTCAGGATTATGATGCTAGTAATGCAATGAAGCATGCAACTGCGGTGGGAGCTGCTGCATTCGCCATCAAATCAATCGAAGATTCGGCCATCTCTGATAAGAAAAAGACGGGCTATGAGCGTAAACCAACTACCGAGAGGATCAAGAGCGGAAAGGAAGAAACAACAATTTCAAAGCCGGTGTCTGGAAGTGGAAGATTTTCCAAAATATTCTCAGGTTCGACGAAAAGGACTCCAGAACGAGAAGATCCACATGGCAAGGTACCAATAAGCACAACCGGGAAGAACCCCGAAAAGGCCGTCCTTCCTGCCCCATCTATCAAGAAAACTCCAACTTTTGCTGATAAACAGTCAAACAGCGCTGGCGGTGTAAACCCTGAAACTGCAGCGCCGAAACCCAATCTGTCCACAACTACGAAACCTGAAAGCGCTTGGAATGAAACCAGGAGGCCGAGTTCAACAGGACCTGGAACAACGAAAACACAAGCAGATATTTGGGAGGAAACTGAGATCGCTAGACTTAAAGAAAGGTATGAGAAAATAAACGCCACAATAGTTGCATGGGAGAAGAAGAAGAAGAAGAAAAGCACAAACCATCTCCATAAAATAGAGAGTGAAGTAGAGCGAAAAAGAGCAAAAGCAGTACTAAAGTTCGGCAGCGAGATGGAAACTATCAAACAGATTGCAGAAGAAGCTAGGGCAAAGGCAGAGGAGAGACATAGGAAAGAAGTCTTGAAGGTGAAAGAAAAGGCAAATGCAATGAGAACAACAGGGAAAGCTCCTAAAACATGCTTCTGCGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Remorin_C

Protein Analysis

323

Amino Acids

35.86

Weight (kDa)

9.95

Isoelectric Point (pI)

39.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13920 AT1G13920 AT1G13920 AT1G13920 AT1G13920 AT1G13920 AT1G13920 AT1G69325
fragaria_vesca	FvH4_4g30432 FvH4_4g30432 FvH4_4g30432 FvH4_4g30432
malus_domestica	MD13G1065400.v1.1 MD16G1063900.v1.1
prunus_persica	Prupe.1G282700_v2.0.a1
pyrus_communis	pycom13g05770 pycom16g05600
rosa_chinensis	RchiOBHm_Chr4g0438751
rosa_laevigata	RLG00000006332
rosa_multiflora	Rmu_co8425743.1_g000001 Rmu_sc0002505.1_g000008
rosa_roxburghii	Rroxscaffold_5G00379780
rosa_rugosa	Rorug04G0312900 Rorug04G0312900 Rorug04G0313000 Rorug04G0313000
rosa_samantha	Rh4AG363600 Rh4BG375100 Rh4CG389200 Rh4DG369400
rosa_wichuraiana	Rw0G007210 Rw0G016760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	58, 165
Acc65I	GGTACC	1 cut(s)	427
AccB1I	GGYRCC	1 cut(s)	427
AccBSI	CCGCTC	1 cut(s)	315
AciI	CCGC	5 cut(s)	89, 92, 209, 315, 531
AclWI	GGATC	2 cut(s)	314, 407
AcoI	YGGCCR	2 cut(s)	76, 252
AcsI	RAATTY	1 cut(s)	27
AcuI	CTGAAG	1 cut(s)	75
AfaI	GTAC	2 cut(s)	429, 810
AfeI	AGCGCT	2 cut(s)	526, 595
AfiI	CCNNNNNNNGG	4 cut(s)	19, 135, 350, 460
AgsI	TTSAA	4 cut(s)	112, 339, 624, 901
AjnI	CCWGG	2 cut(s)	608, 631
AloI	GAACNNNNNNTCC	2 cut(s)	604, 636
AluBI	AGCT	3 cut(s)	218, 860, 944
AluI	AGCT	3 cut(s)	218, 860, 944
Alw26I	GTCTC	2 cut(s)	139, 874
AlwI	GGATC	2 cut(s)	314, 407
AlwNI	CAGNNNCTG	1 cut(s)	632
Aor51HI	AGCGCT	2 cut(s)	526, 595
AoxI	GGCC	4 cut(s)	76, 252, 462, 614
ApeKI	GCWGC	5 cut(s)	66, 218, 221, 551, 822
ApoI	RAATTY	1 cut(s)	27
ArsI	GACNNNNNNTTYG	4 cut(s)	332, 364, 450, 482
Asp700I	GAANNNNTTC	2 cut(s)	137, 364
Asp718I	GGTACC	1 cut(s)	427
AspLEI	GCGC	3 cut(s)	527, 556, 596
AspS9I	GGNCC	1 cut(s)	629
AsuC2I	CCSGG	1 cut(s)	445
AsuHPI	GGTGA	2 cut(s)	34, 916
AvaII	GGWCC	1 cut(s)	629
BanI	GGYRCC	1 cut(s)	427
BbsI	GAAGAC	2 cut(s)	56, 131
BbvI	GCAGC	5 cut(s)	78, 205, 208, 563, 834
BccI	CCATC	5 cut(s)	239, 263, 487, 768, 823
BceAI	ACGGC	3 cut(s)	91, 164, 449
BciT130I	CCWGG	2 cut(s)	610, 633
BcnI	CCSGG	1 cut(s)	445
BcoDI	GTCTC	2 cut(s)	139, 874
BfaI	CTAG	3 cut(s)	183, 681, 861
BfmI	CTRYAG	1 cut(s)	549
BfoI	RGCGCY	3 cut(s)	528, 557, 597
BisI	GCNGC	6 cut(s)	67, 92, 219, 222, 552, 823
BlsI	GCNGC	6 cut(s)	68, 93, 220, 223, 553, 824
BmcAI	AGTACT	1 cut(s)	810
Bme1390I	CCNGG	3 cut(s)	445, 610, 633
Bme18I	GGWCC	1 cut(s)	629
BmgT120I	GGNCC	1 cut(s)	629
BmiI	GGNNCC	2 cut(s)	140, 429
BmrFI	CCNGG	3 cut(s)	445, 610, 633
BmsI	GCATC	2 cut(s)	78, 169
BpiI	GAAGAC	2 cut(s)	56, 131
BpmI	CTGGAG	1 cut(s)	384
BpuMI	CCSGG	1 cut(s)	445
BsaXI	ACNNNNNCTCC	2 cut(s)	604, 634
Bsc4I	CCNNNNNNNGG	4 cut(s)	19, 135, 350, 460
Bse118I	RCCGGY	1 cut(s)	343
Bse1I	ACTGG	1 cut(s)	140
Bse3DI	GCAATG	2 cut(s)	198, 930
BseBI	CCWGG	2 cut(s)	610, 633
BseLI	CCNNNNNNNGG	4 cut(s)	19, 135, 350, 460
BseMI	GCAATG	2 cut(s)	198, 930
BseMII	CTCAG	4 cut(s)	93, 168, 393, 663
BseNI	ACTGG	1 cut(s)	140
BseRI	GAGGAG	1 cut(s)	890
BseX3I	CGGCCG	1 cut(s)	76
BseXI	GCAGC	5 cut(s)	78, 205, 208, 563, 834
Bsh1285I	CGRYCG	1 cut(s)	79
BshFI	GGCC	4 cut(s)	78, 254, 464, 616
BshNI	GGYRCC	1 cut(s)	427
BsiEI	CGRYCG	1 cut(s)	79
BsiSI	CCGG	3 cut(s)	33, 344, 444
BslI	CCNNNNNNNGG	4 cut(s)	19, 135, 350, 460
BsmAI	GTCTC	2 cut(s)	139, 874
BsmBI	CGTCTC	1 cut(s)	139
BsmI	GAATGC	1 cut(s)	224
BsnI	GGCC	4 cut(s)	78, 254, 464, 616
Bsp143I	GATC	3 cut(s)	306, 412, 675
BspACI	CCGC	5 cut(s)	89, 92, 209, 315, 531
BspANI	GGCC	4 cut(s)	78, 254, 464, 616
BspCNI	CTCAG	4 cut(s)	94, 167, 392, 664
BspLI	GGNNCC	2 cut(s)	140, 429
BspMAI	CTGCAG	1 cut(s)	553
BspPI	GGATC	2 cut(s)	314, 407
BspT107I	GGYRCC	1 cut(s)	427
BsrBI	CCGCTC	1 cut(s)	315
BsrDI	GCAATG	2 cut(s)	198, 930
BsrFI	RCCGGY	1 cut(s)	343
BsrI	ACTGG	1 cut(s)	140
BssAI	RCCGGY	1 cut(s)	343
BssMI	GATC	3 cut(s)	306, 412, 675
Bst2UI	CCWGG	2 cut(s)	610, 633
Bst4CI	ACNGT	1 cut(s)	516
Bst6I	CTCTTC	1 cut(s)	51
BstC8I	GCNNGC	2 cut(s)	201, 529
BstDEI	CTNAG	4 cut(s)	102, 154, 379, 672
BstH2I	RGCGCY	3 cut(s)	528, 557, 597
BstHHI	GCGC	3 cut(s)	527, 556, 596
BstKTI	GATC	3 cut(s)	309, 415, 678
BstMAI	GTCTC	2 cut(s)	139, 874
BstMBI	GATC	3 cut(s)	306, 412, 675
BstMCI	CGRYCG	1 cut(s)	79
BstMWI	GCNNNNNNNGC	5 cut(s)	75, 188, 215, 227, 857
BstNI	CCWGG	2 cut(s)	610, 633
BstNSI	RCATGY	2 cut(s)	203, 957
BstSCI	CCNGG	3 cut(s)	443, 608, 631
BstSFI	CTRYAG	1 cut(s)	549
BstV1I	GCAGC	5 cut(s)	78, 205, 208, 563, 834
BstV2I	GAAGAC	2 cut(s)	56, 131
BstX2I	RGATCY	1 cut(s)	412
BstYI	RGATCY	1 cut(s)	412
BstZI	CGGCCG	1 cut(s)	76
BsuRI	GGCC	4 cut(s)	78, 254, 464, 616
Cac8I	GCNNGC	2 cut(s)	201, 529
CaiI	CAGNNNCTG	1 cut(s)	632
CfoI	GCGC	3 cut(s)	527, 556, 596
Cfr10I	RCCGGY	1 cut(s)	343
Cfr13I	GGNCC	1 cut(s)	629
Csp6I	GTAC	2 cut(s)	428, 809
CspCI	CAANNNNNGTGG	4 cut(s)	192, 227, 703, 738
CviAII	CATG	4 cut(s)	200, 419, 726, 954
CviQI	GTAC	2 cut(s)	428, 809
DdeI	CTNAG	4 cut(s)	102, 154, 379, 672
DpnI	GATC	3 cut(s)	308, 414, 677
DpnII	GATC	3 cut(s)	306, 412, 675
DrdI	GACNNNNNNGTC	2 cut(s)	58, 165
DseDI	GACNNNNNNGTC	2 cut(s)	58, 165
EaeI	YGGCCR	2 cut(s)	76, 252
EagI	CGGCCG	1 cut(s)	76
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
EclXI	CGGCCG	1 cut(s)	76
Eco47I	GGWCC	1 cut(s)	629
Eco47III	AGCGCT	2 cut(s)	526, 595
Eco52I	CGGCCG	1 cut(s)	76
Eco57I	CTGAAG	1 cut(s)	75
EcoO109I	RGGNCCY	1 cut(s)	629
EcoRII	CCWGG	2 cut(s)	608, 631
Esp3I	CGTCTC	1 cut(s)	139
FaeI	CATG	4 cut(s)	203, 422, 729, 957
FaiI	YATR	9 cut(s)	177, 201, 282, 420, 699, 727, 768, 885, 955
FatI	CATG	4 cut(s)	199, 418, 725, 953
Fnu4HI	GCNGC	6 cut(s)	67, 92, 219, 222, 552, 823
Fsp4HI	GCNGC	6 cut(s)	67, 92, 219, 222, 552, 823
FspBI	CTAG	3 cut(s)	183, 681, 861
GlaI	GCGC	3 cut(s)	526, 555, 595
GluI	GCNGC	6 cut(s)	67, 92, 219, 222, 552, 823
GsuI	CTGGAG	1 cut(s)	384
HaeII	RGCGCY	3 cut(s)	528, 557, 597
HaeIII	GGCC	4 cut(s)	78, 254, 464, 616
HapII	CCGG	3 cut(s)	33, 344, 444
HhaI	GCGC	3 cut(s)	527, 556, 596
Hin1II	CATG	4 cut(s)	203, 422, 729, 957
Hin6I	GCGC	3 cut(s)	525, 554, 594
HinP1I	GCGC	3 cut(s)	525, 554, 594
HincII	GTYRAC	1 cut(s)	10
HindII	GTYRAC	1 cut(s)	10
HinfI	GANTC	5 cut(s)	59, 104, 166, 248, 397
HpaI	GTTAAC	1 cut(s)	10
HpaII	CCGG	3 cut(s)	33, 344, 444
HphI	GGTGA	2 cut(s)	34, 916
Hpy166II	GTNNAC	4 cut(s)	10, 290, 538, 573
Hpy188I	TCNGA	1 cut(s)	262
Hpy188III	TCNNGA	8 cut(s)	142, 156, 170, 310, 351, 401, 487, 898
Hpy8I	GTNNAC	4 cut(s)	10, 290, 538, 573
Hpy99I	CGWCG	1 cut(s)	391
HpyAV	CCTTC	2 cut(s)	479, 895
HpyCH4III	ACNGT	1 cut(s)	516
HpyCH4V	TGCA	7 cut(s)	191, 203, 224, 551, 725, 851, 923
HpyF10VI	GCNNNNNNNGC	5 cut(s)	75, 188, 215, 227, 857
HpyF3I	CTNAG	4 cut(s)	102, 154, 379, 672
Hsp92II	CATG	4 cut(s)	203, 422, 729, 957
HspAI	GCGC	3 cut(s)	525, 554, 594
KpnI	GGTACC	1 cut(s)	431
KspAI	GTTAAC	1 cut(s)	10
Kzo9I	GATC	3 cut(s)	306, 412, 675
LmnI	GCTCC	2 cut(s)	215, 949
Lsp1109I	GCAGC	5 cut(s)	78, 205, 208, 563, 834
LweI	GCATC	2 cut(s)	78, 169
MaeI	CTAG	3 cut(s)	183, 681, 861
MalI	GATC	3 cut(s)	308, 414, 677
MbiI	CCGCTC	1 cut(s)	315
MboI	GATC	3 cut(s)	306, 412, 675
MflI	RGATCY	1 cut(s)	412
MluCI	AATT	2 cut(s)	27, 333
MlyI	GAGTC	4 cut(s)	68, 113, 175, 391
MmeI	TCCRAC	1 cut(s)	521
MnlI	CCTC	5 cut(s)	12, 297, 606, 658, 868
MroXI	GAANNNNTTC	2 cut(s)	137, 364
MseI	TTAA	2 cut(s)	9, 687
MspI	CCGG	3 cut(s)	33, 344, 444
MspR9I	CCNGG	3 cut(s)	445, 610, 633
Mva1269I	GAATGC	1 cut(s)	224
MvaI	CCWGG	2 cut(s)	610, 633
MwoI	GCNNNNNNNGC	5 cut(s)	75, 188, 215, 227, 857
NciI	CCSGG	1 cut(s)	445
NdeII	GATC	3 cut(s)	306, 412, 675
NlaIII	CATG	4 cut(s)	203, 422, 729, 957
NlaIV	GGNNCC	2 cut(s)	140, 429
NmeAIII	GCCGAG	1 cut(s)	642
NspI	RCATGY	2 cut(s)	203, 957
PaeI	GCATGC	1 cut(s)	203
PctI	GAATGC	1 cut(s)	224
PdmI	GAANNNNTTC	2 cut(s)	137, 364
PfeI	GAWTC	1 cut(s)	248
PkrI	GCNGC	6 cut(s)	68, 93, 220, 223, 553, 824
PleI	GAGTC	4 cut(s)	67, 112, 174, 391
PpsI	GAGTC	4 cut(s)	67, 112, 174, 391
PpuMI	RGGWCCY	1 cut(s)	629
Psp5II	RGGWCCY	1 cut(s)	629
Psp6I	CCWGG	2 cut(s)	608, 631
PspGI	CCWGG	2 cut(s)	608, 631
PspN4I	GGNNCC	2 cut(s)	140, 429
PspPI	GGNCC	1 cut(s)	629
PspPPI	RGGWCCY	1 cut(s)	629
PstI	CTGCAG	1 cut(s)	553
PstNI	CAGNNNCTG	1 cut(s)	632
PsuI	RGATCY	1 cut(s)	412
RsaI	GTAC	2 cut(s)	429, 810
RsaNI	GTAC	2 cut(s)	428, 809
SaqAI	TTAA	2 cut(s)	9, 687
SatI	GCNGC	6 cut(s)	67, 92, 219, 222, 552, 823
Sau3AI	GATC	3 cut(s)	306, 412, 675
Sau96I	GGNCC	1 cut(s)	629
ScaI	AGTACT	1 cut(s)	810
SchI	GAGTC	4 cut(s)	68, 113, 175, 391
ScrFI	CCNGG	3 cut(s)	445, 610, 633
SetI	ASST	9 cut(s)	220, 385, 429, 589, 634, 698, 862, 906, 946
SfaNI	GCATC	2 cut(s)	78, 169
SfcI	CTRYAG	1 cut(s)	549
SinI	GGWCC	1 cut(s)	629
SphI	GCATGC	1 cut(s)	203
Sse9I	AATT	2 cut(s)	27, 333
SsiI	CCGC	5 cut(s)	89, 92, 209, 315, 531
SspI	AATATT	1 cut(s)	375
SspMI	CTAG	3 cut(s)	183, 681, 861
StyD4I	CCNGG	3 cut(s)	443, 608, 631
TaaI	ACNGT	1 cut(s)	516
TaqI	TCGA	2 cut(s)	243, 386
TasI	AATT	2 cut(s)	27, 333
TatI	WGTACW	1 cut(s)	808
TauI	GCSGC	1 cut(s)	94
TfiI	GAWTC	1 cut(s)	248
Tru1I	TTAA	2 cut(s)	9, 687
Tru9I	TTAA	2 cut(s)	9, 687
TseI	GCWGC	5 cut(s)	66, 218, 221, 551, 822
TspDTI	ATGAA	2 cut(s)	209, 618
VpaK11BI	GGWCC	1 cut(s)	629
XapI	RAATTY	1 cut(s)	27
XceI	RCATGY	2 cut(s)	203, 957
XmnI	GAANNNNTTC	2 cut(s)	137, 364
XspI	CTAG	3 cut(s)	183, 681, 861
ZrmI	AGTACT	1 cut(s)	810

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.