Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004384

Physical Location & Seq

Genomic Coordinates Reverse (-)

28523691 .. 28525960

Gene Structure 2270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G282700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGAGTCTTTGCTTAAGCAAATAAGGGTGAGATTTTCTGGTGTAAGACAAGAGAAGACTGAACATGATCGTAGAATATCGCCACAGAAAGCTCAATCTTTCAAAGATAAAAGGAAACCCCAGAATTGGTTCCAGAGACAGCTGTCGGGGAAAATGAGTCAAGACTATGATTCTAACAAGGCAATAGAGCATGCAACCGCAGTGGCAGCAGCTGCATATGCCATTAAGTCAATTGAAGACTCAGCCATCTCTGATCAGAAAAAGACCGGCAATGAGCCGAAAACCTCTTTGGTGAGGATCAAGAGCAAAAAGGAAGAAACAGCAATTTCGAAGCCGGAACCTGGAAGAGTTTCCAAACTATTCCCAGGTTCAACTAAAAGTACTCCAGAACGAGAACATCCAGATGGTGCTGCCACAACTGGGAAGGTCCCCGGAAAGGCTCCGTCAATAAAAAAAACTCCAACTTTTGCTGATAAGCAGATGAACAGCACTGACAGTATAAAACCCGAAACTGCAGCACCACAACCCCTTCGTTCCCCGTCAATTAAAAACACTCCAACTGTTGCTGATAAACAGTTGAACAAAGCTGACAATATAAAACCTGAGACTGCAGGCCCTTCAAATGAAACCATGAGGCAGAGTGCAACAGAACCTGGAACAAGAAAAACACAAGCAGATATTTGGGAGGAGAATAAGCTTACTATGCTTAAAGAAAGGTATGAGAAACAAAACGCCACAATACTTTCCTGGGAGAGCAAGAAGAAGAAGAAAACCAGACACCGACTCAGTACAAAAGAGAGTGAAATAGAGAAAAAAAGAGTAAAAGCTCAACGAAAGTTCAACAGAGATATGGAACATATTAAACAGATTGCAGAGGGAGCAAGGGCACAGGCAGAGGAGCGGTACAGAAATGAAGTCTTGAAGGTAAAAGAAAAGGCAAATGCAATCAGAAAAACAGGGAAAGCTCCTACATCATGTTTCTGCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Remorin_C

Protein Analysis

330

Amino Acids

37.14

Weight (kDa)

10.0

Isoelectric Point (pI)

50.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13920 AT1G13920 AT1G13920 AT1G13920 AT1G13920 AT1G13920 AT1G13920 AT1G69325
fragaria_vesca	FvH4_4g30432 FvH4_4g30432 FvH4_4g30432 FvH4_4g30432
malus_domestica	MD13G1065400.v1.1 MD16G1063900.v1.1
prunus_persica	Prupe.1G282700_v2.0.a1
pyrus_communis	pycom13g05770 pycom16g05600
rosa_chinensis	RchiOBHm_Chr4g0438751
rosa_laevigata	RLG00000006332
rosa_multiflora	Rmu_co8425743.1_g000001 Rmu_sc0002505.1_g000008
rosa_roxburghii	Rroxscaffold_5G00379780
rosa_rugosa	Rorug04G0312900 Rorug04G0312900 Rorug04G0313000 Rorug04G0313000
rosa_samantha	Rh4AG363600 Rh4BG375100 Rh4CG389200 Rh4DG369400
rosa_wichuraiana	Rw0G007210 Rw0G016760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	901
AciI	CCGC	2 cut(s)	198, 901
AclWI	GGATC	1 cut(s)	305
AfaI	GTAC	3 cut(s)	382, 790, 905
AfiI	CCNNNNNNNGG	4 cut(s)	126, 341, 420, 436
AflII	CTTAAG	1 cut(s)	14
AgsI	TTSAA	7 cut(s)	103, 236, 372, 580, 621, 841, 922
AjnI	CCWGG	4 cut(s)	340, 364, 652, 746
AjuI	GAANNNNNNNTTGG	2 cut(s)	272, 304
AluBI	AGCT	7 cut(s)	92, 142, 212, 587, 697, 827, 965
AluI	AGCT	7 cut(s)	92, 142, 212, 587, 697, 827, 965
Alw26I	GTCTC	2 cut(s)	130, 599
AlwI	GGATC	1 cut(s)	305
AlwNI	CAGNNNCTG	2 cut(s)	212, 653
AoxI	GGCC	1 cut(s)	613
ApeKI	GCWGC	5 cut(s)	206, 209, 212, 410, 515
Asp700I	GAANNNNTTC	2 cut(s)	128, 349
AspS9I	GGNCC	2 cut(s)	427, 614
AsuC2I	CCSGG	1 cut(s)	432
AsuHPI	GGTGA	2 cut(s)	40, 304
AsuII	TTCGAA	1 cut(s)	329
AvaII	GGWCC	1 cut(s)	427
BaeGI	GKGCMC	1 cut(s)	889
BbsI	GAAGAC	2 cut(s)	62, 243
BbvI	GCAGC	5 cut(s)	199, 218, 221, 397, 527
BccI	CCATC	2 cut(s)	254, 398
BciT130I	CCWGG	4 cut(s)	342, 366, 654, 748
BclI	TGATCA	1 cut(s)	253
BcnI	CCSGG	1 cut(s)	432
BcoDI	GTCTC	2 cut(s)	130, 599
BfmI	CTRYAG	2 cut(s)	513, 609
BfrI	CTTAAG	1 cut(s)	14
BisI	GCNGC	5 cut(s)	207, 210, 213, 411, 516
BlsI	GCNGC	5 cut(s)	208, 211, 214, 412, 517
BmcAI	AGTACT	1 cut(s)	382
Bme1390I	CCNGG	5 cut(s)	342, 366, 432, 654, 748
Bme18I	GGWCC	1 cut(s)	427
BmgT120I	GGNCC	2 cut(s)	427, 614
BmiI	GGNNCC	4 cut(s)	131, 339, 429, 441
BmrFI	CCNGG	5 cut(s)	342, 366, 432, 654, 748
BmrI	ACTGGG	1 cut(s)	429
BmuI	ACTGGG	1 cut(s)	429
BoxI	GACNNNNGTC	1 cut(s)	142
BpiI	GAAGAC	2 cut(s)	62, 243
BpmI	CTGGAG	1 cut(s)	369
Bpu14I	TTCGAA	1 cut(s)	329
BpuMI	CCSGG	1 cut(s)	432
BsaJI	CCNNGG	3 cut(s)	364, 430, 747
Bsc4I	CCNNNNNNNGG	4 cut(s)	126, 341, 420, 436
Bse118I	RCCGGY	1 cut(s)	266
Bse1I	ACTGG	1 cut(s)	424
Bse3DI	GCAATG	1 cut(s)	277
BseBI	CCWGG	4 cut(s)	342, 366, 654, 748
BseDI	CCNNGG	3 cut(s)	364, 430, 747
BseGI	GGATG	1 cut(s)	397
BseLI	CCNNNNNNNGG	4 cut(s)	126, 341, 420, 436
BseMI	GCAATG	1 cut(s)	277
BseMII	CTCAG	3 cut(s)	255, 594, 799
BseNI	ACTGG	1 cut(s)	424
BseRI	GAGGAG	2 cut(s)	701, 911
BseSI	GKGCMC	1 cut(s)	889
BseXI	GCAGC	5 cut(s)	199, 218, 221, 397, 527
BshFI	GGCC	1 cut(s)	615
BsiSI	CCGG	3 cut(s)	267, 335, 432
BslFI	GGGAC	1 cut(s)	413
BslI	CCNNNNNNNGG	4 cut(s)	126, 341, 420, 436
BsmAI	GTCTC	2 cut(s)	130, 599
BsmFI	GGGAC	1 cut(s)	413
BsnI	GGCC	1 cut(s)	615
Bsp119I	TTCGAA	1 cut(s)	329
Bsp1286I	GDGCHC	1 cut(s)	889
Bsp143I	GATC	3 cut(s)	67, 253, 297
BspACI	CCGC	2 cut(s)	198, 901
BspANI	GGCC	1 cut(s)	615
BspCNI	CTCAG	3 cut(s)	254, 595, 798
BspLI	GGNNCC	4 cut(s)	131, 339, 429, 441
BspMAI	CTGCAG	2 cut(s)	517, 613
BspPI	GGATC	1 cut(s)	305
BspT104I	TTCGAA	1 cut(s)	329
BspTI	CTTAAG	1 cut(s)	14
BsrBI	CCGCTC	1 cut(s)	901
BsrDI	GCAATG	1 cut(s)	277
BsrFI	RCCGGY	1 cut(s)	266
BsrI	ACTGG	1 cut(s)	424
BssAI	RCCGGY	1 cut(s)	266
BssECI	CCNNGG	3 cut(s)	364, 430, 747
BssMI	GATC	3 cut(s)	67, 253, 297
Bst2UI	CCWGG	4 cut(s)	342, 366, 654, 748
Bst4CI	ACNGT	3 cut(s)	497, 562, 576
Bst6I	CTCTTC	1 cut(s)	340
BstAFI	CTTAAG	1 cut(s)	14
BstAPI	GCANNNNNTGC	1 cut(s)	212
BstBI	TTCGAA	1 cut(s)	329
BstC8I	GCNNGC	2 cut(s)	192, 613
BstDEI	CTNAG	3 cut(s)	241, 603, 785
BstF5I	GGATG	1 cut(s)	397
BstKTI	GATC	3 cut(s)	70, 256, 300
BstMAI	GTCTC	2 cut(s)	130, 599
BstMBI	GATC	3 cut(s)	67, 253, 297
BstMWI	GCNNNNNNNGC	5 cut(s)	206, 212, 218, 703, 878
BstNI	CCWGG	4 cut(s)	342, 366, 654, 748
BstNSI	RCATGY	1 cut(s)	194
BstPAI	GACNNNNGTC	1 cut(s)	142
BstSCI	CCNGG	5 cut(s)	340, 364, 430, 652, 746
BstSFI	CTRYAG	2 cut(s)	513, 609
BstSLI	GKGCMC	1 cut(s)	889
BstV1I	GCAGC	5 cut(s)	199, 218, 221, 397, 527
BstV2I	GAAGAC	2 cut(s)	62, 243
BsuRI	GGCC	1 cut(s)	615
BtsCI	GGATG	1 cut(s)	397
BtsI	GCAGTG	1 cut(s)	207
BtsIMutI	CAGTG	2 cut(s)	207, 489
Cac8I	GCNNGC	2 cut(s)	192, 613
CaiI	CAGNNNCTG	2 cut(s)	212, 653
Cfr10I	RCCGGY	1 cut(s)	266
Cfr13I	GGNCC	2 cut(s)	427, 614
Csp6I	GTAC	3 cut(s)	381, 789, 904
CspCI	CAANNNNNGTGG	2 cut(s)	183, 218
CviAII	CATG	4 cut(s)	65, 191, 631, 975
CviQI	GTAC	3 cut(s)	381, 789, 904
DdeI	CTNAG	3 cut(s)	241, 603, 785
DpnI	GATC	3 cut(s)	69, 255, 299
DpnII	GATC	3 cut(s)	67, 253, 297
Eam1104I	CTCTTC	1 cut(s)	340
EarI	CTCTTC	1 cut(s)	340
Eco47I	GGWCC	1 cut(s)	427
EcoO109I	RGGNCCY	2 cut(s)	427, 614
EcoRII	CCWGG	4 cut(s)	340, 364, 652, 746
FaeI	CATG	4 cut(s)	68, 194, 634, 978
FaqI	GGGAC	1 cut(s)	413
FatI	CATG	4 cut(s)	64, 190, 630, 974
FauNDI	CATATG	1 cut(s)	217
FbaI	TGATCA	1 cut(s)	253
Fnu4HI	GCNGC	5 cut(s)	207, 210, 213, 411, 516
FokI	GGATG	1 cut(s)	384
Fsp4HI	GCNGC	5 cut(s)	207, 210, 213, 411, 516
GluI	GCNGC	5 cut(s)	207, 210, 213, 411, 516
GsuI	CTGGAG	1 cut(s)	369
HaeIII	GGCC	1 cut(s)	615
HapII	CCGG	3 cut(s)	267, 335, 432
Hin1II	CATG	4 cut(s)	68, 194, 634, 978
HindIII	AAGCTT	1 cut(s)	695
HinfI	GANTC	5 cut(s)	5, 157, 170, 239, 783
HpaII	CCGG	3 cut(s)	267, 335, 432
HphI	GGTGA	2 cut(s)	40, 304
Hpy188I	TCNGA	3 cut(s)	253, 258, 950
Hpy188III	TCNNGA	6 cut(s)	133, 161, 301, 386, 401, 919
HpyAV	CCTTC	4 cut(s)	418, 539, 627, 916
HpyCH4III	ACNGT	3 cut(s)	497, 562, 576
HpyCH4V	TGCA	7 cut(s)	194, 215, 515, 611, 644, 872, 944
HpyF10VI	GCNNNNNNNGC	5 cut(s)	206, 212, 218, 703, 878
HpyF3I	CTNAG	3 cut(s)	241, 603, 785
Hsp92II	CATG	4 cut(s)	68, 194, 634, 978
Ksp22I	TGATCA	1 cut(s)	253
Kzo9I	GATC	3 cut(s)	67, 253, 297
LmnI	GCTCC	4 cut(s)	445, 878, 898, 970
Lsp1109I	GCAGC	5 cut(s)	199, 218, 221, 397, 527
MalI	GATC	3 cut(s)	69, 255, 299
MbiI	CCGCTC	1 cut(s)	901
MboI	GATC	3 cut(s)	67, 253, 297
MboII	GAAGA	7 cut(s)	67, 248, 326, 357, 772, 775, 778
MfeI	CAATTG	1 cut(s)	231
MhlI	GDGCHC	1 cut(s)	889
MluCI	AATT	4 cut(s)	124, 231, 324, 543
MlyI	GAGTC	4 cut(s)	14, 166, 233, 777
MmeI	TCCRAC	2 cut(s)	485, 581
MnlI	CCTC	6 cut(s)	288, 295, 627, 679, 868, 889
MroXI	GAANNNNTTC	2 cut(s)	128, 349
MseI	TTAA	5 cut(s)	15, 225, 546, 708, 861
MslI	CAYNNNNRTG	1 cut(s)	402
MspA1I	CMGCKG	2 cut(s)	142, 212
MspCI	CTTAAG	1 cut(s)	14
MspI	CCGG	3 cut(s)	267, 335, 432
MspR9I	CCNGG	5 cut(s)	342, 366, 432, 654, 748
MunI	CAATTG	1 cut(s)	231
MvaI	CCWGG	4 cut(s)	342, 366, 654, 748
MwoI	GCNNNNNNNGC	5 cut(s)	206, 212, 218, 703, 878
NciI	CCSGG	1 cut(s)	432
NdeI	CATATG	1 cut(s)	217
NdeII	GATC	3 cut(s)	67, 253, 297
NlaIII	CATG	4 cut(s)	68, 194, 634, 978
NlaIV	GGNNCC	4 cut(s)	131, 339, 429, 441
NspI	RCATGY	1 cut(s)	194
NspV	TTCGAA	1 cut(s)	329
PaeI	GCATGC	1 cut(s)	194
PdmI	GAANNNNTTC	2 cut(s)	128, 349
PfeI	GAWTC	1 cut(s)	170
PkrI	GCNGC	5 cut(s)	208, 211, 214, 412, 517
PleI	GAGTC	4 cut(s)	13, 165, 233, 777
PpsI	GAGTC	4 cut(s)	13, 165, 233, 777
PpuMI	RGGWCCY	1 cut(s)	427
PshAI	GACNNNNGTC	1 cut(s)	142
Psp5II	RGGWCCY	1 cut(s)	427
Psp6I	CCWGG	4 cut(s)	340, 364, 652, 746
PspGI	CCWGG	4 cut(s)	340, 364, 652, 746
PspN4I	GGNNCC	4 cut(s)	131, 339, 429, 441
PspPI	GGNCC	2 cut(s)	427, 614
PspPPI	RGGWCCY	1 cut(s)	427
PstI	CTGCAG	2 cut(s)	517, 613
PstNI	CAGNNNCTG	2 cut(s)	212, 653
PvuII	CAGCTG	2 cut(s)	142, 212
RsaI	GTAC	3 cut(s)	382, 790, 905
RsaNI	GTAC	3 cut(s)	381, 789, 904
RseI	CAYNNNNRTG	1 cut(s)	402
SaqAI	TTAA	5 cut(s)	15, 225, 546, 708, 861
SatI	GCNGC	5 cut(s)	207, 210, 213, 411, 516
Sau3AI	GATC	3 cut(s)	67, 253, 297
Sau96I	GGNCC	2 cut(s)	427, 614
ScaI	AGTACT	1 cut(s)	382
SchI	GAGTC	4 cut(s)	14, 166, 233, 777
ScrFI	CCNGG	5 cut(s)	342, 366, 432, 654, 748
SduI	GDGCHC	1 cut(s)	889
SfcI	CTRYAG	2 cut(s)	513, 609
SfuI	TTCGAA	1 cut(s)	329
SinI	GGWCC	1 cut(s)	427
SmiMI	CAYNNNNRTG	1 cut(s)	402
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
SphI	GCATGC	1 cut(s)	194
Sse9I	AATT	4 cut(s)	124, 231, 324, 543
SsiI	CCGC	2 cut(s)	198, 901
StyD4I	CCNGG	5 cut(s)	340, 364, 430, 652, 746
TaaI	ACNGT	3 cut(s)	497, 562, 576
TaqI	TCGA	1 cut(s)	329
TasI	AATT	4 cut(s)	124, 231, 324, 543
TatI	WGTACW	2 cut(s)	380, 788
TfiI	GAWTC	1 cut(s)	170
Tru1I	TTAA	5 cut(s)	15, 225, 546, 708, 861
Tru9I	TTAA	5 cut(s)	15, 225, 546, 708, 861
TscAI	CASTG	2 cut(s)	207, 496
TseI	GCWGC	5 cut(s)	206, 209, 212, 410, 515
TspDTI	ATGAA	3 cut(s)	497, 639, 927
TspGWI	ACGGA	1 cut(s)	432
TspRI	CASTG	2 cut(s)	207, 496
Vha464I	CTTAAG	1 cut(s)	14
VpaK11BI	GGWCC	1 cut(s)	427
XceI	RCATGY	1 cut(s)	194
XmnI	GAANNNNTTC	2 cut(s)	128, 349
ZrmI	AGTACT	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.