Rh4AG363600

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0004384
Physical Location & Seq
Forward (+)
67215011 .. 67218810
3800 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG363600.1

Sequence Viewer

Length: 1083 bp
ATGTATATGACTAAGCAAAGCATTATTGGTAGGGTGAGATTTTCTGGTGTAAATCAGGTGAAAACAGAAGAGTCCGGCAGCGTCATTGATCGAAGAATACCACCACAGAAAACTCAATCTTTCAAAGAGAAAAAGAAGACGCAGAACTGGTTCCAGAGACGGTTTTCTGGGCAAATGAGTCAAGATTATGATTCTATCGTTGAAATAGAGCATGCAACCGCAGTGGCAGCTGCCGCATTTGCAGTTAAATCAATCGAAGAATCGGCAGTCTCTGATAAGAAAAGGACAGGCGATGAAACTAGTGACTCTTTGGTGAAGATCAAGAGCAAAAAGGAAGAAACAACAATTTCAAAGCCAGAACCTGGAAGACTTTCCAAACTATTCTCAGGTGCAGGTTTAACAAAAAGTACTCAAGAAGATCCAGATAGTAAGGTGCCAATAAGTACTTCCCCTACTTTTCCAAACGACAAGATCCCGGGAAAGACCATCCTTCCTGCTCCCTCTATCAAACGAACTCCAACGTCTGATGCCATCCTTCCTGCTTCCTCTATTAAACAAACTCCAACGTCTGATGCCATCCATCCTGCCCCATCAATGAAAAAAACTCCAACTTCTGCTGATAAGCCATTGAACAGCACAAGCAGTATAAAACCCGAAACTTCAGCACCAAAACTCAATTTGCCCACCACTATGAAACCTGCTGCACCTGCAAATGAAACCAAATGGCAGAGTGCAGCAACACCTGGAGTGGTAAAGACAAAAGCAGATAAATGGGAGGAGGCTGAGATGGCTAAACTCAAAGAAAGGTATGAGCAGCAAAATGCTACAATACTTTCCTGGGAGAACAAGAAGAAGAAGAAAAGCAAACTTCGGCTGGAGAAAACAGAGAGTGAAATAGAGAGAAGAAGAGTAAAAGCGCTACAAAAGTACAACAATGAGATGGAATATATCAAACAGATTGCAGAAGGAGCAAGGGCACAGGCAGAGGAGAAGCGTAGGAATAAGGAACTCAAGGTGAAAGAAAAGGCAAATACACTAAGAAGAACAGGGGAAGAAGCTCCTACAACATGTTGCTGCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

360

Amino Acids

40.12

Weight (kDa)

9.71

Isoelectric Point (pI)

58.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 251 - 351 5.8e-28 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 715
Acc36I ACCTGC 3 cut(s) 383, 706, 715
AccB1I GGYRCC 1 cut(s) 433
AccB7I CCANNNNNTGG 1 cut(s) 362
AciI CCGC 2 cut(s) 219, 234
AclWI GGATC 2 cut(s) 413, 466
AcuI CTGAAG 1 cut(s) 645
AfaI GTAC 3 cut(s) 409, 445, 929
AfeI AGCGCT 1 cut(s) 918
AfiI CCNNNNNNNGG 1 cut(s) 362
AflIII ACRYGT 1 cut(s) 1067
AgsI TTSAA 4 cut(s) 124, 203, 351, 631
AhlI ACTAGT 1 cut(s) 299
AjnI CCWGG 3 cut(s) 361, 742, 836
AjuI GAANNNNNNNTTGG 2 cut(s) 430, 462
AluBI AGCT 2 cut(s) 230, 1058
AluI AGCT 2 cut(s) 230, 1058
Alw26I GTCTC 2 cut(s) 151, 274
AlwI GGATC 2 cut(s) 413, 466
AlwNI CAGNNNCTG 2 cut(s) 272, 362
Ama87I CYCGRG 1 cut(s) 475
Aor51HI AGCGCT 1 cut(s) 918
ApeKI GCWGC 7 cut(s) 78, 227, 230, 701, 734, 814, 1074
Asp700I GAANNNNTTC 2 cut(s) 149, 370
AspLEI GCGC 1 cut(s) 919
AsuC2I CCSGG 2 cut(s) 476, 477
AsuHPI GGTGA 4 cut(s) 46, 70, 325, 1027
AvaI CYCGRG 1 cut(s) 475
BaeGI GKGCMC 1 cut(s) 979
BanI GGYRCC 1 cut(s) 433
BbsI GAAGAC 2 cut(s) 143, 373
BbvI GCAGC 7 cut(s) 90, 217, 239, 688, 746, 826, 1061
BccI CCATC 7 cut(s) 494, 539, 584, 588, 598, 781, 934
BciT130I CCWGG 3 cut(s) 363, 744, 838
BcnI CCSGG 2 cut(s) 476, 477
BcoDI GTCTC 2 cut(s) 151, 274
BcuI ACTAGT 1 cut(s) 299
BfaI CTAG 1 cut(s) 300
BfoI RGCGCY 1 cut(s) 920
BfuAI ACCTGC 3 cut(s) 383, 706, 715
BisI GCNGC 8 cut(s) 79, 228, 231, 234, 702, 735, 815, 1075
BlsI GCNGC 8 cut(s) 80, 229, 232, 235, 703, 736, 816, 1076
BmcAI AGTACT 2 cut(s) 409, 445
Bme1390I CCNGG 5 cut(s) 363, 476, 477, 744, 838
BmeT110I CYCGRG 1 cut(s) 475
BmiI GGNNCC 2 cut(s) 152, 435
BmrFI CCNGG 5 cut(s) 363, 476, 477, 744, 838
BmsI GCATC 2 cut(s) 517, 562
BpiI GAAGAC 2 cut(s) 143, 373
BpmI CTGGAG 2 cut(s) 765, 896
BpuEI CTTGAG 2 cut(s) 396, 995
BpuMI CCSGG 2 cut(s) 476, 477
BsaJI CCNNGG 2 cut(s) 475, 837
Bsc4I CCNNNNNNNGG 1 cut(s) 362
Bse1I ACTGG 1 cut(s) 152
BseBI CCWGG 3 cut(s) 363, 744, 838
BseDI CCNNGG 2 cut(s) 475, 837
BseGI GGATG 4 cut(s) 486, 531, 576, 580
BseLI CCNNNNNNNGG 1 cut(s) 362
BseMII CTCAG 2 cut(s) 399, 774
BseNI ACTGG 1 cut(s) 152
BseRI GAGGAG 2 cut(s) 791, 1001
BseSI GKGCMC 1 cut(s) 979
BseXI GCAGC 7 cut(s) 90, 217, 239, 688, 746, 826, 1061
BsgI GTGCAG 3 cut(s) 411, 687, 753
BshNI GGYRCC 1 cut(s) 433
BsiHKCI CYCGRG 1 cut(s) 475
BsiSI CCGG 2 cut(s) 75, 476
BslI CCNNNNNNNGG 1 cut(s) 362
BsmAI GTCTC 2 cut(s) 151, 274
BsmBI CGTCTC 1 cut(s) 151
BsoBI CYCGRG 1 cut(s) 475
Bsp1286I GDGCHC 1 cut(s) 979
Bsp143I GATC 4 cut(s) 88, 318, 418, 471
BspACI CCGC 2 cut(s) 219, 234
BspCNI CTCAG 2 cut(s) 398, 775
BspLI GGNNCC 2 cut(s) 152, 435
BspMI ACCTGC 3 cut(s) 383, 706, 715
BspPI GGATC 2 cut(s) 413, 466
BspT107I GGYRCC 1 cut(s) 433
BsrI ACTGG 1 cut(s) 152
BssECI CCNNGG 2 cut(s) 475, 837
BssMI GATC 4 cut(s) 88, 318, 418, 471
Bst2UI CCWGG 3 cut(s) 363, 744, 838
Bst4CI ACNGT 1 cut(s) 162
Bst6I CTCTTC 2 cut(s) 63, 901
BstC8I GCNNGC 1 cut(s) 213
BstDEI CTNAG 4 cut(s) 12, 385, 783, 1037
BstF5I GGATG 4 cut(s) 486, 531, 576, 580
BstH2I RGCGCY 1 cut(s) 920
BstHHI GCGC 1 cut(s) 919
BstKTI GATC 4 cut(s) 91, 321, 421, 474
BstMAI GTCTC 2 cut(s) 151, 274
BstMBI GATC 4 cut(s) 88, 318, 418, 471
BstMWI GCNNNNNNNGC 6 cut(s) 227, 233, 239, 707, 788, 968
BstNI CCWGG 3 cut(s) 363, 744, 838
BstNSI RCATGY 2 cut(s) 215, 1071
BstSCI CCNGG 5 cut(s) 361, 474, 475, 742, 836
BstSLI GKGCMC 1 cut(s) 979
BstV1I GCAGC 7 cut(s) 90, 217, 239, 688, 746, 826, 1061
BstV2I GAAGAC 2 cut(s) 143, 373
BstX2I RGATCY 2 cut(s) 418, 471
BstYI RGATCY 2 cut(s) 418, 471
BtgZI GCGATG 1 cut(s) 306
BtsCI GGATG 4 cut(s) 486, 531, 576, 580
BtsI GCAGTG 1 cut(s) 228
BtsIMutI CAGTG 1 cut(s) 228
BveI ACCTGC 3 cut(s) 383, 706, 715
Cac8I GCNNGC 1 cut(s) 213
CaiI CAGNNNCTG 2 cut(s) 272, 362
CfoI GCGC 1 cut(s) 919
Cfr9I CCCGGG 1 cut(s) 475
CseI GACGC 2 cut(s) 70, 148
Csp6I GTAC 3 cut(s) 408, 444, 928
CspCI CAANNNNNGTGG 2 cut(s) 204, 239
CviAII CATG 2 cut(s) 212, 1068
CviJI RGCY 7 cut(s) 230, 355, 625, 782, 791, 874, 1058
CviKI_1 RGCY 7 cut(s) 230, 355, 625, 782, 791, 874, 1058
CviQI GTAC 3 cut(s) 408, 444, 928
DdeI CTNAG 4 cut(s) 12, 385, 783, 1037
DpnI GATC 4 cut(s) 90, 320, 420, 473
DpnII GATC 4 cut(s) 88, 318, 418, 471
Eam1104I CTCTTC 2 cut(s) 63, 901
EarI CTCTTC 2 cut(s) 63, 901
Eco47III AGCGCT 1 cut(s) 918
Eco57I CTGAAG 1 cut(s) 645
Eco88I CYCGRG 1 cut(s) 475
EcoRII CCWGG 3 cut(s) 361, 742, 836
Esp3I CGTCTC 1 cut(s) 151
FaeI CATG 2 cut(s) 215, 1071
FaiI YATR 9 cut(s) 6, 8, 189, 213, 647, 692, 810, 948, 1069
FatI CATG 2 cut(s) 211, 1067
Fnu4HI GCNGC 8 cut(s) 79, 228, 231, 234, 702, 735, 815, 1075
FokI GGATG 4 cut(s) 473, 518, 563, 567
Fsp4HI GCNGC 8 cut(s) 79, 228, 231, 234, 702, 735, 815, 1075
FspBI CTAG 1 cut(s) 300
GlaI GCGC 1 cut(s) 918
GluI GCNGC 8 cut(s) 79, 228, 231, 234, 702, 735, 815, 1075
GsuI CTGGAG 2 cut(s) 765, 896
HaeII RGCGCY 1 cut(s) 920
HapII CCGG 2 cut(s) 75, 476
HgaI GACGC 2 cut(s) 70, 148
HhaI GCGC 1 cut(s) 919
Hin1II CATG 2 cut(s) 215, 1071
Hin6I GCGC 1 cut(s) 917
HinP1I GCGC 1 cut(s) 917
HinfI GANTC 5 cut(s) 71, 178, 191, 260, 305
HpaII CCGG 2 cut(s) 75, 476
HphI GGTGA 4 cut(s) 46, 70, 325, 1027
Hpy188I TCNGA 3 cut(s) 274, 526, 571
Hpy188III TCNNGA 5 cut(s) 154, 182, 322, 413, 422
HpyAV CCTTC 3 cut(s) 500, 545, 959
HpyCH4III ACNGT 1 cut(s) 162
HpyCH4IV ACGT 2 cut(s) 521, 566
HpyCH4V TGCA 7 cut(s) 215, 242, 392, 704, 710, 734, 962
HpyF10VI GCNNNNNNNGC 6 cut(s) 227, 233, 239, 707, 788, 968
HpyF3I CTNAG 4 cut(s) 12, 385, 783, 1037
HpySE526I ACGT 2 cut(s) 521, 566
Hsp92II CATG 2 cut(s) 215, 1071
HspAI GCGC 1 cut(s) 917
Kzo9I GATC 4 cut(s) 88, 318, 418, 471
LmnI GCTCC 3 cut(s) 502, 968, 1063
Lsp1109I GCAGC 7 cut(s) 90, 217, 239, 688, 746, 826, 1061
LweI GCATC 2 cut(s) 517, 562
MaeI CTAG 1 cut(s) 300
MaeII ACGT 2 cut(s) 521, 566
MaeIII GTNAC 1 cut(s) 302
MalI GATC 4 cut(s) 90, 320, 420, 473
MboI GATC 4 cut(s) 88, 318, 418, 471
MflI RGATCY 2 cut(s) 418, 471
MhlI GDGCHC 1 cut(s) 979
MluCI AATT 2 cut(s) 345, 676
MlyI GAGTC 3 cut(s) 80, 187, 299
MmeI TCCRAC 3 cut(s) 542, 587, 632
MnlI CCTC 5 cut(s) 511, 556, 769, 772, 979
MroXI GAANNNNTTC 2 cut(s) 149, 370
MseI TTAA 3 cut(s) 246, 398, 552
MslI CAYNNNNRTG 1 cut(s) 689
MspA1I CMGCKG 1 cut(s) 230
MspI CCGG 2 cut(s) 75, 476
MspR9I CCNGG 5 cut(s) 363, 476, 477, 744, 838
MvaI CCWGG 3 cut(s) 363, 744, 838
MwoI GCNNNNNNNGC 6 cut(s) 227, 233, 239, 707, 788, 968
NciI CCSGG 2 cut(s) 476, 477
NdeII GATC 4 cut(s) 88, 318, 418, 471
NlaIII CATG 2 cut(s) 215, 1071
NlaIV GGNNCC 2 cut(s) 152, 435
NmuCI GTSAC 1 cut(s) 302
NspI RCATGY 2 cut(s) 215, 1071
PaeI GCATGC 1 cut(s) 215
PaqCI CACCTGC 1 cut(s) 715
PciI ACATGT 1 cut(s) 1067
PdmI GAANNNNTTC 2 cut(s) 149, 370
PfeI GAWTC 2 cut(s) 191, 260
PflMI CCANNNNNTGG 1 cut(s) 362
PkrI GCNGC 8 cut(s) 80, 229, 232, 235, 703, 736, 816, 1076
PleI GAGTC 3 cut(s) 79, 186, 299
PpsI GAGTC 3 cut(s) 79, 186, 299
PscI ACATGT 1 cut(s) 1067
Psp6I CCWGG 3 cut(s) 361, 742, 836
PspGI CCWGG 3 cut(s) 361, 742, 836
PspN4I GGNNCC 2 cut(s) 152, 435
PstNI CAGNNNCTG 2 cut(s) 272, 362
PsuI RGATCY 2 cut(s) 418, 471
PvuII CAGCTG 1 cut(s) 230
RsaI GTAC 3 cut(s) 409, 445, 929
RsaNI GTAC 3 cut(s) 408, 444, 928
RseI CAYNNNNRTG 1 cut(s) 689
SaqAI TTAA 3 cut(s) 246, 398, 552
SatI GCNGC 8 cut(s) 79, 228, 231, 234, 702, 735, 815, 1075
Sau3AI GATC 4 cut(s) 88, 318, 418, 471
ScaI AGTACT 2 cut(s) 409, 445
SchI GAGTC 3 cut(s) 80, 187, 299
ScrFI CCNGG 5 cut(s) 363, 476, 477, 744, 838
SduI GDGCHC 1 cut(s) 979
SfaNI GCATC 2 cut(s) 517, 562
SmaI CCCGGG 1 cut(s) 477
SmiMI CAYNNNNRTG 1 cut(s) 689
SmlI CTYRAG 2 cut(s) 411, 1010
SmoI CTYRAG 2 cut(s) 411, 1010
SpeI ACTAGT 1 cut(s) 299
SphI GCATGC 1 cut(s) 215
Sse9I AATT 2 cut(s) 345, 676
SsiI CCGC 2 cut(s) 219, 234
SspMI CTAG 1 cut(s) 300
StyD4I CCNGG 5 cut(s) 361, 474, 475, 742, 836
TaaI ACNGT 1 cut(s) 162
TaiI ACGT 2 cut(s) 524, 569
TaqI TCGA 2 cut(s) 91, 255
TasI AATT 2 cut(s) 345, 676
TatI WGTACW 3 cut(s) 407, 443, 927
TauI GCSGC 1 cut(s) 236
TfiI GAWTC 2 cut(s) 191, 260
Tru1I TTAA 3 cut(s) 246, 398, 552
Tru9I TTAA 3 cut(s) 246, 398, 552
TscAI CASTG 1 cut(s) 228
TseFI GTSAC 1 cut(s) 302
TseI GCWGC 7 cut(s) 78, 227, 230, 701, 734, 814, 1074
Tsp45I GTSAC 1 cut(s) 302
TspDTI ATGAA 4 cut(s) 309, 611, 707, 729
TspMI CCCGGG 1 cut(s) 475
TspRI CASTG 1 cut(s) 228
Van91I CCANNNNNTGG 1 cut(s) 362
XceI RCATGY 2 cut(s) 215, 1071
XmaI CCCGGG 1 cut(s) 475
XmnI GAANNNNTTC 2 cut(s) 149, 370
XspI CTAG 1 cut(s) 300
ZrmI AGTACT 2 cut(s) 409, 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.