Rmu_co8425743.1_g000001

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8425743.1
OG0004384
Physical Location & Seq
Reverse (-)
2 .. 535
534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8425743.1_g000001.1.cds

Sequence Viewer

Length: 320 bp
atggagcctaagcaaatgagggtgagattttctggtgtaaatcaggtgaaaacacaagagtccggcagcgtcattgatcgaagaataccaccacagaaagctcaatccttcaaagagaaaaagaagacgcagaactggttccagagacggttttctgggcaaatgagtcaagattatgattctatcgttgaaatagagcatgcaactgcagtggcagctgccgcatttgcagttaaatcaatcgaagaatcggcagtctctgataagaaaaggacaggcgatgaaactagtgactctttggtcaagatcaagagcaaaaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

106

Amino Acids

11.98

Weight (kDa)

9.74

Isoelectric Point (pI)

55.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 299
AciI CCGC 1 cut(s) 222
AgsI TTSAA 2 cut(s) 112, 191
AhlI ACTAGT 1 cut(s) 287
AluBI AGCT 2 cut(s) 101, 218
AluI AGCT 2 cut(s) 101, 218
Alw26I GTCTC 2 cut(s) 139, 262
AlwNI CAGNNNCTG 1 cut(s) 260
ApeKI GCWGC 3 cut(s) 66, 215, 218
Asp700I GAANNNNTTC 1 cut(s) 137
AsuHPI GGTGA 2 cut(s) 34, 58
BbsI GAAGAC 1 cut(s) 131
BbvI GCAGC 3 cut(s) 78, 205, 227
BcoDI GTCTC 2 cut(s) 139, 262
BcuI ACTAGT 1 cut(s) 287
BfaI CTAG 1 cut(s) 288
BfmI CTRYAG 1 cut(s) 207
BisI GCNGC 4 cut(s) 67, 216, 219, 222
BlsI GCNGC 4 cut(s) 68, 217, 220, 223
BmiI GGNNCC 2 cut(s) 6, 140
BpiI GAAGAC 1 cut(s) 131
Bpu10I CCTNAGC 1 cut(s) 9
Bse1I ACTGG 1 cut(s) 140
BseNI ACTGG 1 cut(s) 140
BseXI GCAGC 3 cut(s) 78, 205, 227
BsiSI CCGG 1 cut(s) 63
BsmAI GTCTC 2 cut(s) 139, 262
BsmBI CGTCTC 1 cut(s) 139
Bsp143I GATC 2 cut(s) 76, 306
BspACI CCGC 1 cut(s) 222
BspLI GGNNCC 2 cut(s) 6, 140
BspMAI CTGCAG 1 cut(s) 211
BsrI ACTGG 1 cut(s) 140
BssMI GATC 2 cut(s) 76, 306
Bst4CI ACNGT 1 cut(s) 150
BstC8I GCNNGC 1 cut(s) 201
BstDEI CTNAG 1 cut(s) 9
BstKTI GATC 2 cut(s) 79, 309
BstMAI GTCTC 2 cut(s) 139, 262
BstMBI GATC 2 cut(s) 76, 306
BstMWI GCNNNNNNNGC 3 cut(s) 215, 221, 227
BstNSI RCATGY 1 cut(s) 203
BstSFI CTRYAG 1 cut(s) 207
BstV1I GCAGC 3 cut(s) 78, 205, 227
BstV2I GAAGAC 1 cut(s) 131
BtgZI GCGATG 1 cut(s) 294
BtsI GCAGTG 1 cut(s) 216
BtsIMutI CAGTG 1 cut(s) 216
Cac8I GCNNGC 1 cut(s) 201
CaiI CAGNNNCTG 1 cut(s) 260
CseI GACGC 2 cut(s) 58, 136
CspCI CAANNNNNGTGG 2 cut(s) 192, 227
CviAII CATG 1 cut(s) 200
CviJI RGCY 3 cut(s) 7, 101, 218
CviKI_1 RGCY 3 cut(s) 7, 101, 218
DdeI CTNAG 1 cut(s) 9
DpnI GATC 2 cut(s) 78, 308
DpnII GATC 2 cut(s) 76, 306
DrdI GACNNNNNNGTC 1 cut(s) 299
DseDI GACNNNNNNGTC 1 cut(s) 299
Esp3I CGTCTC 1 cut(s) 139
FaeI CATG 1 cut(s) 203
FaiI YATR 2 cut(s) 177, 201
FatI CATG 1 cut(s) 199
Fnu4HI GCNGC 4 cut(s) 67, 216, 219, 222
Fsp4HI GCNGC 4 cut(s) 67, 216, 219, 222
FspBI CTAG 1 cut(s) 288
GluI GCNGC 4 cut(s) 67, 216, 219, 222
HapII CCGG 1 cut(s) 63
HgaI GACGC 2 cut(s) 58, 136
Hin1II CATG 1 cut(s) 203
HinfI GANTC 5 cut(s) 59, 166, 179, 248, 293
HpaII CCGG 1 cut(s) 63
HphI GGTGA 2 cut(s) 34, 58
Hpy188I TCNGA 1 cut(s) 262
Hpy188III TCNNGA 4 cut(s) 142, 170, 304, 310
HpyAV CCTTC 1 cut(s) 118
HpyCH4III ACNGT 1 cut(s) 150
HpyCH4V TGCA 3 cut(s) 203, 209, 230
HpyF10VI GCNNNNNNNGC 3 cut(s) 215, 221, 227
HpyF3I CTNAG 1 cut(s) 9
Hsp92II CATG 1 cut(s) 203
Kzo9I GATC 2 cut(s) 76, 306
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 7 cut(s) 18, 29, 76, 121, 141, 155, 261
Lsp1109I GCAGC 3 cut(s) 78, 205, 227
MaeI CTAG 1 cut(s) 288
MaeIII GTNAC 1 cut(s) 290
MalI GATC 2 cut(s) 78, 308
MboI GATC 2 cut(s) 76, 306
MboII GAAGA 3 cut(s) 93, 136, 257
MlyI GAGTC 3 cut(s) 68, 175, 287
MnlI CCTC 1 cut(s) 12
MroXI GAANNNNTTC 1 cut(s) 137
MseI TTAA 1 cut(s) 234
MspA1I CMGCKG 1 cut(s) 218
MspI CCGG 1 cut(s) 63
MwoI GCNNNNNNNGC 3 cut(s) 215, 221, 227
NdeII GATC 2 cut(s) 76, 306
NlaIII CATG 1 cut(s) 203
NlaIV GGNNCC 2 cut(s) 6, 140
NmuCI GTSAC 1 cut(s) 290
NspI RCATGY 1 cut(s) 203
PaeI GCATGC 1 cut(s) 203
PdmI GAANNNNTTC 1 cut(s) 137
PfeI GAWTC 2 cut(s) 179, 248
PkrI GCNGC 4 cut(s) 68, 217, 220, 223
PleI GAGTC 3 cut(s) 67, 174, 287
PpsI GAGTC 3 cut(s) 67, 174, 287
PspN4I GGNNCC 2 cut(s) 6, 140
PstI CTGCAG 1 cut(s) 211
PstNI CAGNNNCTG 1 cut(s) 260
PvuII CAGCTG 1 cut(s) 218
SaqAI TTAA 1 cut(s) 234
SatI GCNGC 4 cut(s) 67, 216, 219, 222
Sau3AI GATC 2 cut(s) 76, 306
SchI GAGTC 3 cut(s) 68, 175, 287
SetI ASST 3 cut(s) 48, 103, 220
SfcI CTRYAG 1 cut(s) 207
SpeI ACTAGT 1 cut(s) 287
SphI GCATGC 1 cut(s) 203
SsiI CCGC 1 cut(s) 222
SspMI CTAG 1 cut(s) 288
TaaI ACNGT 1 cut(s) 150
TaqI TCGA 2 cut(s) 79, 243
TauI GCSGC 1 cut(s) 224
TfiI GAWTC 2 cut(s) 179, 248
Tru1I TTAA 1 cut(s) 234
Tru9I TTAA 1 cut(s) 234
TscAI CASTG 1 cut(s) 216
TseFI GTSAC 1 cut(s) 290
TseI GCWGC 3 cut(s) 66, 215, 218
Tsp45I GTSAC 1 cut(s) 290
TspDTI ATGAA 1 cut(s) 297
TspRI CASTG 1 cut(s) 216
XceI RCATGY 1 cut(s) 203
XmnI GAANNNNTTC 1 cut(s) 137
XspI CTAG 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.