Rh4DG369400

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0004384
Physical Location & Seq
Forward (+)
58869957 .. 58873756
3800 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG369400.1

Sequence Viewer

Length: 792 bp
ATGGAGCCTAAGCAAATGAGGGTGAGATTTTCTGGTGTAAATCAGGTGAAAACAGAAGAGTCCGGCAGCGTCATTGATCGAAGAATACCACCACAGAAAACTCAATCTTTCAAAGAGAAAAAGAAGACGCAGAACTGGTTCCAGAGACGGTTTTCTGGGCAAATGAGTCAAGATTATGATTCTATCGTTGAAATAGAGCATGCAACCGCAGTGGCAGCTGCCGCATTTGCAGTTAAATCAATCGAAGAATCGGCAGTCTCTGATAAGAAAAGGACAGGCGATGAAACTAGTGACTCTTTGGTGAAGATCAAGAGCAAAAAGGAAGAAACAACAATTTCAAAGCCAGAACCTGGAAGACTTTCCAAACTATTCTCAGGTTTAACAAAAAGTACTCAAGAAGATCCAGATAGTAAGGTGCCAATAAGTACTTCCCCTACTTTTCCAAACGACAAGATCCCGGGAAAGACCATCCTTCCTGCTCCCTCTATCAAACGAACTCCAACGTCTGATGCCATCCTTCCTGCTTCCTCTATTAAACAAACTCCAACGTCTGATGCCATCCATCCTGCCCCATCAATGAAAAAAACTCCAACTTCTGCTGATAAGCCATTGAACAGCACAAGCAGTATAAAACCCGAAACTTCAGCACCAAAACTCAATTTGCCCACCACTATGAAACCTGCTGCACCTGCAAATGAAACCAAATGGCAGAGTGCAGCAACACCTGGAGTGGTAAAGACAAAAGCAGATAAATGGGAGGAGGCTGAGATGGCTAAACTCAAAGAAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

263

Amino Acids

28.75

Weight (kDa)

9.66

Isoelectric Point (pI)

50.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 697
Acc36I ACCTGC 2 cut(s) 688, 697
AccB1I GGYRCC 1 cut(s) 415
AccB7I CCANNNNNTGG 1 cut(s) 350
AciI CCGC 2 cut(s) 207, 222
AclWI GGATC 2 cut(s) 395, 448
AcuI CTGAAG 1 cut(s) 627
AfaI GTAC 2 cut(s) 391, 427
AfiI CCNNNNNNNGG 1 cut(s) 350
AgsI TTSAA 4 cut(s) 112, 191, 339, 613
AhlI ACTAGT 1 cut(s) 287
AjnI CCWGG 2 cut(s) 349, 724
AjuI GAANNNNNNNTTGG 2 cut(s) 412, 444
AluBI AGCT 1 cut(s) 218
AluI AGCT 1 cut(s) 218
Alw26I GTCTC 2 cut(s) 139, 262
AlwI GGATC 2 cut(s) 395, 448
AlwNI CAGNNNCTG 2 cut(s) 260, 350
Ama87I CYCGRG 1 cut(s) 457
ApeKI GCWGC 5 cut(s) 66, 215, 218, 683, 716
Asp700I GAANNNNTTC 2 cut(s) 137, 358
AsuC2I CCSGG 2 cut(s) 458, 459
AsuHPI GGTGA 3 cut(s) 34, 58, 313
AvaI CYCGRG 1 cut(s) 457
BanI GGYRCC 1 cut(s) 415
BbsI GAAGAC 2 cut(s) 131, 361
BbvI GCAGC 5 cut(s) 78, 205, 227, 670, 728
BccI CCATC 6 cut(s) 476, 521, 566, 570, 580, 763
BciT130I CCWGG 2 cut(s) 351, 726
BcnI CCSGG 2 cut(s) 458, 459
BcoDI GTCTC 2 cut(s) 139, 262
BcuI ACTAGT 1 cut(s) 287
BfaI CTAG 1 cut(s) 288
BfuAI ACCTGC 2 cut(s) 688, 697
BisI GCNGC 6 cut(s) 67, 216, 219, 222, 684, 717
BlsI GCNGC 6 cut(s) 68, 217, 220, 223, 685, 718
BmcAI AGTACT 2 cut(s) 391, 427
Bme1390I CCNGG 4 cut(s) 351, 458, 459, 726
BmeT110I CYCGRG 1 cut(s) 457
BmiI GGNNCC 3 cut(s) 6, 140, 417
BmrFI CCNGG 4 cut(s) 351, 458, 459, 726
BmsI GCATC 2 cut(s) 499, 544
BpiI GAAGAC 2 cut(s) 131, 361
BpmI CTGGAG 1 cut(s) 747
Bpu10I CCTNAGC 1 cut(s) 9
BpuEI CTTGAG 1 cut(s) 378
BpuMI CCSGG 2 cut(s) 458, 459
BsaJI CCNNGG 1 cut(s) 457
Bsc4I CCNNNNNNNGG 1 cut(s) 350
Bse1I ACTGG 1 cut(s) 140
BseBI CCWGG 2 cut(s) 351, 726
BseDI CCNNGG 1 cut(s) 457
BseGI GGATG 4 cut(s) 468, 513, 558, 562
BseLI CCNNNNNNNGG 1 cut(s) 350
BseMII CTCAG 2 cut(s) 387, 756
BseNI ACTGG 1 cut(s) 140
BseRI GAGGAG 1 cut(s) 773
BseXI GCAGC 5 cut(s) 78, 205, 227, 670, 728
BsgI GTGCAG 2 cut(s) 669, 735
BshNI GGYRCC 1 cut(s) 415
BsiHKCI CYCGRG 1 cut(s) 457
BsiSI CCGG 2 cut(s) 63, 458
BslI CCNNNNNNNGG 1 cut(s) 350
BsmAI GTCTC 2 cut(s) 139, 262
BsmBI CGTCTC 1 cut(s) 139
BsoBI CYCGRG 1 cut(s) 457
Bsp143I GATC 4 cut(s) 76, 306, 400, 453
BspACI CCGC 2 cut(s) 207, 222
BspCNI CTCAG 2 cut(s) 386, 757
BspLI GGNNCC 3 cut(s) 6, 140, 417
BspMI ACCTGC 2 cut(s) 688, 697
BspPI GGATC 2 cut(s) 395, 448
BspT107I GGYRCC 1 cut(s) 415
BsrI ACTGG 1 cut(s) 140
BssECI CCNNGG 1 cut(s) 457
BssMI GATC 4 cut(s) 76, 306, 400, 453
Bst2UI CCWGG 2 cut(s) 351, 726
Bst4CI ACNGT 1 cut(s) 150
Bst6I CTCTTC 1 cut(s) 51
BstC8I GCNNGC 1 cut(s) 201
BstDEI CTNAG 3 cut(s) 9, 373, 765
BstF5I GGATG 4 cut(s) 468, 513, 558, 562
BstKTI GATC 4 cut(s) 79, 309, 403, 456
BstMAI GTCTC 2 cut(s) 139, 262
BstMBI GATC 4 cut(s) 76, 306, 400, 453
BstMWI GCNNNNNNNGC 5 cut(s) 215, 221, 227, 689, 770
BstNI CCWGG 2 cut(s) 351, 726
BstNSI RCATGY 1 cut(s) 203
BstSCI CCNGG 4 cut(s) 349, 456, 457, 724
BstV1I GCAGC 5 cut(s) 78, 205, 227, 670, 728
BstV2I GAAGAC 2 cut(s) 131, 361
BstX2I RGATCY 2 cut(s) 400, 453
BstYI RGATCY 2 cut(s) 400, 453
BtgZI GCGATG 1 cut(s) 294
BtsCI GGATG 4 cut(s) 468, 513, 558, 562
BtsI GCAGTG 1 cut(s) 216
BtsIMutI CAGTG 1 cut(s) 216
BveI ACCTGC 2 cut(s) 688, 697
Cac8I GCNNGC 1 cut(s) 201
CaiI CAGNNNCTG 2 cut(s) 260, 350
Cfr9I CCCGGG 1 cut(s) 457
CseI GACGC 2 cut(s) 58, 136
Csp6I GTAC 2 cut(s) 390, 426
CspCI CAANNNNNGTGG 2 cut(s) 192, 227
CviAII CATG 1 cut(s) 200
CviJI RGCY 6 cut(s) 7, 218, 343, 607, 764, 773
CviKI_1 RGCY 6 cut(s) 7, 218, 343, 607, 764, 773
CviQI GTAC 2 cut(s) 390, 426
DdeI CTNAG 3 cut(s) 9, 373, 765
DpnI GATC 4 cut(s) 78, 308, 402, 455
DpnII GATC 4 cut(s) 76, 306, 400, 453
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Eco57I CTGAAG 1 cut(s) 627
Eco88I CYCGRG 1 cut(s) 457
EcoRII CCWGG 2 cut(s) 349, 724
Esp3I CGTCTC 1 cut(s) 139
FaeI CATG 1 cut(s) 203
FaiI YATR 4 cut(s) 177, 201, 629, 674
FatI CATG 1 cut(s) 199
Fnu4HI GCNGC 6 cut(s) 67, 216, 219, 222, 684, 717
FokI GGATG 4 cut(s) 455, 500, 545, 549
Fsp4HI GCNGC 6 cut(s) 67, 216, 219, 222, 684, 717
FspBI CTAG 1 cut(s) 288
GluI GCNGC 6 cut(s) 67, 216, 219, 222, 684, 717
GsuI CTGGAG 1 cut(s) 747
HapII CCGG 2 cut(s) 63, 458
HgaI GACGC 2 cut(s) 58, 136
Hin1II CATG 1 cut(s) 203
HinfI GANTC 5 cut(s) 59, 166, 179, 248, 293
HpaII CCGG 2 cut(s) 63, 458
HphI GGTGA 3 cut(s) 34, 58, 313
Hpy188I TCNGA 3 cut(s) 262, 508, 553
Hpy188III TCNNGA 5 cut(s) 142, 170, 310, 395, 404
HpyAV CCTTC 2 cut(s) 482, 527
HpyCH4III ACNGT 1 cut(s) 150
HpyCH4IV ACGT 2 cut(s) 503, 548
HpyCH4V TGCA 5 cut(s) 203, 230, 686, 692, 716
HpyF10VI GCNNNNNNNGC 5 cut(s) 215, 221, 227, 689, 770
HpyF3I CTNAG 3 cut(s) 9, 373, 765
HpySE526I ACGT 2 cut(s) 503, 548
Hsp92II CATG 1 cut(s) 203
Kzo9I GATC 4 cut(s) 76, 306, 400, 453
LmnI GCTCC 2 cut(s) 4, 484
Lsp1109I GCAGC 5 cut(s) 78, 205, 227, 670, 728
LweI GCATC 2 cut(s) 499, 544
MaeI CTAG 1 cut(s) 288
MaeII ACGT 2 cut(s) 503, 548
MaeIII GTNAC 1 cut(s) 290
MalI GATC 4 cut(s) 78, 308, 402, 455
MboI GATC 4 cut(s) 76, 306, 400, 453
MboII GAAGA 8 cut(s) 68, 93, 136, 257, 316, 335, 366, 410
MflI RGATCY 2 cut(s) 400, 453
MluCI AATT 2 cut(s) 333, 658
MlyI GAGTC 3 cut(s) 68, 175, 287
MmeI TCCRAC 3 cut(s) 524, 569, 614
MnlI CCTC 5 cut(s) 12, 493, 538, 751, 754
MroXI GAANNNNTTC 2 cut(s) 137, 358
MseI TTAA 3 cut(s) 234, 380, 534
MslI CAYNNNNRTG 1 cut(s) 671
MspA1I CMGCKG 1 cut(s) 218
MspI CCGG 2 cut(s) 63, 458
MspR9I CCNGG 4 cut(s) 351, 458, 459, 726
MvaI CCWGG 2 cut(s) 351, 726
MwoI GCNNNNNNNGC 5 cut(s) 215, 221, 227, 689, 770
NciI CCSGG 2 cut(s) 458, 459
NdeII GATC 4 cut(s) 76, 306, 400, 453
NlaIII CATG 1 cut(s) 203
NlaIV GGNNCC 3 cut(s) 6, 140, 417
NmuCI GTSAC 1 cut(s) 290
NspI RCATGY 1 cut(s) 203
PaeI GCATGC 1 cut(s) 203
PaqCI CACCTGC 1 cut(s) 697
PdmI GAANNNNTTC 2 cut(s) 137, 358
PfeI GAWTC 2 cut(s) 179, 248
PflMI CCANNNNNTGG 1 cut(s) 350
PkrI GCNGC 6 cut(s) 68, 217, 220, 223, 685, 718
PleI GAGTC 3 cut(s) 67, 174, 287
PpsI GAGTC 3 cut(s) 67, 174, 287
Psp6I CCWGG 2 cut(s) 349, 724
PspGI CCWGG 2 cut(s) 349, 724
PspN4I GGNNCC 3 cut(s) 6, 140, 417
PstNI CAGNNNCTG 2 cut(s) 260, 350
PsuI RGATCY 2 cut(s) 400, 453
PvuII CAGCTG 1 cut(s) 218
RsaI GTAC 2 cut(s) 391, 427
RsaNI GTAC 2 cut(s) 390, 426
RseI CAYNNNNRTG 1 cut(s) 671
SaqAI TTAA 3 cut(s) 234, 380, 534
SatI GCNGC 6 cut(s) 67, 216, 219, 222, 684, 717
Sau3AI GATC 4 cut(s) 76, 306, 400, 453
ScaI AGTACT 2 cut(s) 391, 427
SchI GAGTC 3 cut(s) 68, 175, 287
ScrFI CCNGG 4 cut(s) 351, 458, 459, 726
SfaNI GCATC 2 cut(s) 499, 544
SmaI CCCGGG 1 cut(s) 459
SmiMI CAYNNNNRTG 1 cut(s) 671
SmlI CTYRAG 1 cut(s) 393
SmoI CTYRAG 1 cut(s) 393
SpeI ACTAGT 1 cut(s) 287
SphI GCATGC 1 cut(s) 203
Sse9I AATT 2 cut(s) 333, 658
SsiI CCGC 2 cut(s) 207, 222
SspMI CTAG 1 cut(s) 288
StyD4I CCNGG 4 cut(s) 349, 456, 457, 724
TaaI ACNGT 1 cut(s) 150
TaiI ACGT 2 cut(s) 506, 551
TaqI TCGA 2 cut(s) 79, 243
TasI AATT 2 cut(s) 333, 658
TatI WGTACW 2 cut(s) 389, 425
TauI GCSGC 1 cut(s) 224
TfiI GAWTC 2 cut(s) 179, 248
Tru1I TTAA 3 cut(s) 234, 380, 534
Tru9I TTAA 3 cut(s) 234, 380, 534
TscAI CASTG 1 cut(s) 216
TseFI GTSAC 1 cut(s) 290
TseI GCWGC 5 cut(s) 66, 215, 218, 683, 716
Tsp45I GTSAC 1 cut(s) 290
TspDTI ATGAA 4 cut(s) 297, 593, 689, 711
TspMI CCCGGG 1 cut(s) 457
TspRI CASTG 1 cut(s) 216
Van91I CCANNNNNTGG 1 cut(s) 350
XceI RCATGY 1 cut(s) 203
XmaI CCCGGG 1 cut(s) 457
XmnI GAANNNNTTC 2 cut(s) 137, 358
XspI CTAG 1 cut(s) 288
ZrmI AGTACT 2 cut(s) 391, 427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.