Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0004384

Physical Location & Seq

Genomic Coordinates Forward (+)

30062721 .. 30065744

Gene Structure 3024 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g30432.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGAACCAAAGCAAATGAGGGTAAGAATTTCTGGTGTAGATCAGGTGAAAGCAGAACAGTCTGGCAGCGTGATTGATCGAAGAATACCACATCGGAAAACTCAATCTTTCAAAGAGAAAAAGAAGACGCAGAACTGGTTTCAGAGACAGTTTTCTGGGAAAATGAGTGAAGATTATGATTCTATCGTTGAAATAGAGCATGCAACAGCGGTGGCAGCTGCCACATTTGCAGTTAAATCAATCGAAGAAGCAGCAGTCTCTGATAAGAAACGGGCAGGCAATGAAACTGGTGACTCTTTGGTGAAGATCAAGAGCAAAAAGGAAGAAACAACACTTTCAAAGCCAGAAGCTGGAAGACTTTCCAAACTATTCTCAGGTGCAGGTTTAACAAAAGGTACTCAAGAGGACCAAGATAGTAAGGTGCCAATAAGTACTTCCCCGAACCACAAGATCCCGCAAAAGACCCTCCTTCCTGCTCCCTCGATTAAACAAACTCCAACGTCTGATGCCATCCTTCCTGCTCCATCAATGAGAAAAGCTCCAACTTTTGCTGATAAGCCATTGAACAGCACAAGCAGTATAAAACCCGGAACTTCAGCACCACAACTGGATTTGCCCTTCACTACGAAAGCTGCTACACCTTCAAATGAAACCAAATGGCAGAGTGCAGCAAGACCTGGAGTGGTTAAGACAAAAGCAGATGAATGGGAGGAGGCTGAGATGGCTAAACTCAACAAAAGGTATGAGCAGCAAACCACTACAATACTTTCCTGGGAGAACAAGAAGAAGAAGAAAAGCAAACTTCAGCTGGGAAAAAGAGAGAGTGAAATAGAGAGAAGAAGATCAAAATCGCTAGAAAAATACAACAACCAGATGGAATCTATTAAACAGATTGCAGAAGGAGCAAGGGCACAGGCAGAGGAGAAGCGTAAGAATAAAGTACTCAAGGTGAAAGAAAAGGCAAATACACTAAGAAGAACAGGGGAAGAAGCTCCTACAGGATGTTGCTGCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Remorin_C

Protein Analysis

339

Amino Acids

37.66

Weight (kDa)

9.8

Isoelectric Point (pI)

55.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Remorin_C	PF03763	233 - 333	2.1e-28	Remorin, C-terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13920 AT1G13920 AT1G13920 AT1G13920 AT1G13920 AT1G13920 AT1G13920 AT1G69325
fragaria_vesca	FvH4_4g30432 FvH4_4g30432 FvH4_4g30432 FvH4_4g30432
malus_domestica	MD13G1065400.v1.1 MD16G1063900.v1.1
prunus_persica	Prupe.1G282700_v2.0.a1
pyrus_communis	pycom13g05770 pycom16g05600
rosa_chinensis	RchiOBHm_Chr4g0438751
rosa_laevigata	RLG00000006332
rosa_multiflora	Rmu_co8425743.1_g000001 Rmu_sc0002505.1_g000008
rosa_roxburghii	Rroxscaffold_5G00379780
rosa_rugosa	Rorug04G0312900 Rorug04G0312900 Rorug04G0313000 Rorug04G0313000
rosa_samantha	Rh4AG363600 Rh4BG375100 Rh4CG389200 Rh4DG369400
rosa_wichuraiana	Rw0G007210 Rw0G016760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	371
AccB1I	GGYRCC	1 cut(s)	421
AccB7I	CCANNNNNTGG	1 cut(s)	350
AciI	CCGC	2 cut(s)	209, 455
AclWI	GGATC	1 cut(s)	445
AcsI	RAATTY	1 cut(s)	27
AcuI	CTGAAG	2 cut(s)	579, 788
AfaI	GTAC	3 cut(s)	397, 433, 942
AfiI	CCNNNNNNNGG	1 cut(s)	350
AgsI	TTSAA	5 cut(s)	112, 191, 339, 565, 645
AjnI	CCWGG	2 cut(s)	676, 770
AjuI	GAANNNNNNNTTGG	2 cut(s)	418, 450
AluBI	AGCT	6 cut(s)	218, 350, 539, 632, 808, 992
AluI	AGCT	6 cut(s)	218, 350, 539, 632, 808, 992
Alw26I	GTCTC	2 cut(s)	139, 262
AlwI	GGATC	1 cut(s)	445
AlwNI	CAGNNNCTG	2 cut(s)	260, 350
ApeKI	GCWGC	8 cut(s)	66, 215, 218, 251, 632, 668, 748, 1008
ApoI	RAATTY	1 cut(s)	27
Asp700I	GAANNNNTTC	1 cut(s)	358
AspS9I	GGNCC	1 cut(s)	406
AsuC2I	CCSGG	1 cut(s)	588
AsuHPI	GGTGA	4 cut(s)	58, 302, 313, 961
AvaII	GGWCC	1 cut(s)	406
BaeGI	GKGCMC	1 cut(s)	913
BanI	GGYRCC	1 cut(s)	421
BbsI	GAAGAC	2 cut(s)	131, 361
BbvI	GCAGC	8 cut(s)	78, 205, 227, 263, 619, 680, 760, 995
BccI	CCATC	4 cut(s)	518, 532, 715, 868
BciT130I	CCWGG	2 cut(s)	678, 772
BcnI	CCSGG	1 cut(s)	588
BcoDI	GTCTC	2 cut(s)	139, 262
BfaI	CTAG	1 cut(s)	854
BfmI	CTRYAG	1 cut(s)	996
BfuAI	ACCTGC	1 cut(s)	371
BisI	GCNGC	8 cut(s)	67, 216, 219, 252, 633, 669, 749, 1009
BlsI	GCNGC	8 cut(s)	68, 217, 220, 253, 634, 670, 750, 1010
BmcAI	AGTACT	2 cut(s)	433, 942
Bme1390I	CCNGG	3 cut(s)	588, 678, 772
Bme18I	GGWCC	1 cut(s)	406
BmgT120I	GGNCC	1 cut(s)	406
BmiI	GGNNCC	2 cut(s)	6, 423
BmrFI	CCNGG	3 cut(s)	588, 678, 772
BmsI	GCATC	1 cut(s)	496
BpiI	GAAGAC	2 cut(s)	131, 361
BplI	GAGNNNNNCTC	2 cut(s)	523, 555
BpmI	CTGGAG	1 cut(s)	699
BpuEI	CTTGAG	2 cut(s)	384, 929
BpuMI	CCSGG	1 cut(s)	588
BsaBI	GATNNNNATC	1 cut(s)	847
BsaJI	CCNNGG	1 cut(s)	771
Bsc4I	CCNNNNNNNGG	1 cut(s)	350
Bse1I	ACTGG	3 cut(s)	140, 292, 612
Bse3DI	GCAATG	1 cut(s)	286
Bse8I	GATNNNNATC	1 cut(s)	847
BseBI	CCWGG	2 cut(s)	678, 772
BseDI	CCNNGG	1 cut(s)	771
BseGI	GGATG	2 cut(s)	510, 1007
BseJI	GATNNNNATC	1 cut(s)	847
BseLI	CCNNNNNNNGG	1 cut(s)	350
BseMI	GCAATG	1 cut(s)	286
BseMII	CTCAG	2 cut(s)	387, 708
BseNI	ACTGG	3 cut(s)	140, 292, 612
BseRI	GAGGAG	2 cut(s)	725, 935
BseSI	GKGCMC	1 cut(s)	913
BseXI	GCAGC	8 cut(s)	78, 205, 227, 263, 619, 680, 760, 995
BseYI	CCCAGC	1 cut(s)	808
BsgI	GTGCAG	2 cut(s)	399, 687
BshNI	GGYRCC	1 cut(s)	421
BsiSI	CCGG	1 cut(s)	588
BslI	CCNNNNNNNGG	1 cut(s)	350
BsmAI	GTCTC	2 cut(s)	139, 262
Bsp1286I	GDGCHC	1 cut(s)	913
Bsp143I	GATC	5 cut(s)	40, 76, 306, 450, 842
BspACI	CCGC	2 cut(s)	209, 455
BspCNI	CTCAG	2 cut(s)	386, 709
BspLI	GGNNCC	2 cut(s)	6, 423
BspMI	ACCTGC	1 cut(s)	371
BspPI	GGATC	1 cut(s)	445
BspT107I	GGYRCC	1 cut(s)	421
BsrDI	GCAATG	1 cut(s)	286
BsrI	ACTGG	3 cut(s)	140, 292, 612
BssECI	CCNNGG	1 cut(s)	771
BssMI	GATC	5 cut(s)	40, 76, 306, 450, 842
Bst2UI	CCWGG	2 cut(s)	678, 772
Bst4CI	ACNGT	2 cut(s)	60, 150
BstC8I	GCNNGC	2 cut(s)	201, 277
BstDEI	CTNAG	3 cut(s)	373, 717, 971
BstF5I	GGATG	2 cut(s)	510, 1007
BstKTI	GATC	5 cut(s)	43, 79, 309, 453, 845
BstMAI	GTCTC	2 cut(s)	139, 262
BstMBI	GATC	5 cut(s)	40, 76, 306, 450, 842
BstMWI	GCNNNNNNNGC	4 cut(s)	215, 227, 722, 902
BstNI	CCWGG	2 cut(s)	678, 772
BstNSI	RCATGY	1 cut(s)	203
BstSCI	CCNGG	3 cut(s)	586, 676, 770
BstSFI	CTRYAG	1 cut(s)	996
BstSLI	GKGCMC	1 cut(s)	913
BstV1I	GCAGC	8 cut(s)	78, 205, 227, 263, 619, 680, 760, 995
BstV2I	GAAGAC	2 cut(s)	131, 361
BstX2I	RGATCY	1 cut(s)	450
BstYI	RGATCY	1 cut(s)	450
BtsCI	GGATG	2 cut(s)	510, 1007
BveI	ACCTGC	1 cut(s)	371
Cac8I	GCNNGC	2 cut(s)	201, 277
CaiI	CAGNNNCTG	2 cut(s)	260, 350
Cfr13I	GGNCC	1 cut(s)	406
CseI	GACGC	1 cut(s)	136
Csp6I	GTAC	3 cut(s)	396, 432, 941
CspCI	CAANNNNNGTGG	2 cut(s)	192, 227
CviAII	CATG	1 cut(s)	200
CviQI	GTAC	3 cut(s)	396, 432, 941
DdeI	CTNAG	3 cut(s)	373, 717, 971
DpnI	GATC	5 cut(s)	42, 78, 308, 452, 844
DpnII	GATC	5 cut(s)	40, 76, 306, 450, 842
Eco47I	GGWCC	1 cut(s)	406
Eco57I	CTGAAG	2 cut(s)	579, 788
EcoRII	CCWGG	2 cut(s)	676, 770
FaeI	CATG	1 cut(s)	203
FaiI	YATR	4 cut(s)	177, 201, 581, 744
FatI	CATG	1 cut(s)	199
FauI	CCCGC	1 cut(s)	462
Fnu4HI	GCNGC	8 cut(s)	67, 216, 219, 252, 633, 669, 749, 1009
FokI	GGATG	1 cut(s)	497
Fsp4HI	GCNGC	8 cut(s)	67, 216, 219, 252, 633, 669, 749, 1009
FspBI	CTAG	1 cut(s)	854
GluI	GCNGC	8 cut(s)	67, 216, 219, 252, 633, 669, 749, 1009
GsaI	CCCAGC	1 cut(s)	812
GsuI	CTGGAG	1 cut(s)	699
HapII	CCGG	1 cut(s)	588
HgaI	GACGC	1 cut(s)	136
Hin1II	CATG	1 cut(s)	203
HinfI	GANTC	3 cut(s)	179, 293, 878
HpaII	CCGG	1 cut(s)	588
HphI	GGTGA	4 cut(s)	58, 302, 313, 961
Hpy188I	TCNGA	4 cut(s)	96, 144, 262, 505
Hpy188III	TCNNGA	2 cut(s)	310, 401
HpyAV	CCTTC	5 cut(s)	479, 524, 628, 651, 893
HpyCH4III	ACNGT	2 cut(s)	60, 150
HpyCH4IV	ACGT	1 cut(s)	500
HpyCH4V	TGCA	5 cut(s)	203, 230, 380, 668, 896
HpyF10VI	GCNNNNNNNGC	4 cut(s)	215, 227, 722, 902
HpyF3I	CTNAG	3 cut(s)	373, 717, 971
HpySE526I	ACGT	1 cut(s)	500
Hsp92II	CATG	1 cut(s)	203
Kzo9I	GATC	5 cut(s)	40, 76, 306, 450, 842
LmnI	GCTCC	5 cut(s)	481, 526, 544, 902, 997
Lsp1109I	GCAGC	8 cut(s)	78, 205, 227, 263, 619, 680, 760, 995
LweI	GCATC	1 cut(s)	496
MaeI	CTAG	1 cut(s)	854
MaeII	ACGT	1 cut(s)	500
MaeIII	GTNAC	1 cut(s)	290
MalI	GATC	5 cut(s)	42, 78, 308, 452, 844
MboI	GATC	5 cut(s)	40, 76, 306, 450, 842
MflI	RGATCY	1 cut(s)	450
MhlI	GDGCHC	1 cut(s)	913
MluCI	AATT	1 cut(s)	27
MlyI	GAGTC	1 cut(s)	287
MmeI	TCCRAC	2 cut(s)	521, 566
MnlI	CCTC	7 cut(s)	12, 397, 476, 490, 703, 706, 913
MroXI	GAANNNNTTC	1 cut(s)	358
MseI	TTAA	5 cut(s)	234, 386, 486, 687, 885
MspA1I	CMGCKG	3 cut(s)	209, 218, 808
MspI	CCGG	1 cut(s)	588
MspR9I	CCNGG	3 cut(s)	588, 678, 772
MvaI	CCWGG	2 cut(s)	678, 772
MwoI	GCNNNNNNNGC	4 cut(s)	215, 227, 722, 902
NciI	CCSGG	1 cut(s)	588
NdeII	GATC	5 cut(s)	40, 76, 306, 450, 842
NlaIII	CATG	1 cut(s)	203
NlaIV	GGNNCC	2 cut(s)	6, 423
NmuCI	GTSAC	1 cut(s)	290
NspI	RCATGY	1 cut(s)	203
PaeI	GCATGC	1 cut(s)	203
PdmI	GAANNNNTTC	1 cut(s)	358
PfeI	GAWTC	2 cut(s)	179, 878
PflMI	CCANNNNNTGG	1 cut(s)	350
PkrI	GCNGC	8 cut(s)	68, 217, 220, 253, 634, 670, 750, 1010
PleI	GAGTC	1 cut(s)	287
PpsI	GAGTC	1 cut(s)	287
Psp6I	CCWGG	2 cut(s)	676, 770
PspFI	CCCAGC	1 cut(s)	808
PspGI	CCWGG	2 cut(s)	676, 770
PspN4I	GGNNCC	2 cut(s)	6, 423
PspPI	GGNCC	1 cut(s)	406
PstNI	CAGNNNCTG	2 cut(s)	260, 350
PsuI	RGATCY	1 cut(s)	450
PvuII	CAGCTG	2 cut(s)	218, 808
RsaI	GTAC	3 cut(s)	397, 433, 942
RsaNI	GTAC	3 cut(s)	396, 432, 941
SaqAI	TTAA	5 cut(s)	234, 386, 486, 687, 885
SatI	GCNGC	8 cut(s)	67, 216, 219, 252, 633, 669, 749, 1009
Sau3AI	GATC	5 cut(s)	40, 76, 306, 450, 842
Sau96I	GGNCC	1 cut(s)	406
ScaI	AGTACT	2 cut(s)	433, 942
SchI	GAGTC	1 cut(s)	287
ScrFI	CCNGG	3 cut(s)	588, 678, 772
SduI	GDGCHC	1 cut(s)	913
SfaNI	GCATC	1 cut(s)	496
SfcI	CTRYAG	1 cut(s)	996
SinI	GGWCC	1 cut(s)	406
SmlI	CTYRAG	2 cut(s)	399, 944
SmoI	CTYRAG	2 cut(s)	399, 944
SphI	GCATGC	1 cut(s)	203
Sse9I	AATT	1 cut(s)	27
SsiI	CCGC	2 cut(s)	209, 455
SspMI	CTAG	1 cut(s)	854
StyD4I	CCNGG	3 cut(s)	586, 676, 770
TaaI	ACNGT	2 cut(s)	60, 150
TaiI	ACGT	1 cut(s)	503
TaqI	TCGA	3 cut(s)	79, 243, 482
TasI	AATT	1 cut(s)	27
TatI	WGTACW	2 cut(s)	431, 940
TfiI	GAWTC	2 cut(s)	179, 878
Tru1I	TTAA	5 cut(s)	234, 386, 486, 687, 885
Tru9I	TTAA	5 cut(s)	234, 386, 486, 687, 885
TseFI	GTSAC	1 cut(s)	290
TseI	GCWGC	8 cut(s)	66, 215, 218, 251, 632, 668, 748, 1008
Tsp45I	GTSAC	1 cut(s)	290
TspDTI	ATGAA	3 cut(s)	297, 663, 717
Van91I	CCANNNNNTGG	1 cut(s)	350
VpaK11BI	GGWCC	1 cut(s)	406
XapI	RAATTY	1 cut(s)	27
XceI	RCATGY	1 cut(s)	203
XmnI	GAANNNNTTC	1 cut(s)	358
XspI	CTAG	1 cut(s)	854
ZrmI	AGTACT	2 cut(s)	433, 942

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.