Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004384

Physical Location & Seq

Genomic Coordinates Forward (+)

60035350 .. 60037187

Gene Structure 1838 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00379780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGAGCCTAAGCAAATGAGGATGAGATTTTCTGGTGTAAATCAGGTGAAAACAGAAGAGTCTGGCAGCGTCATTGATCGAAGAATACCACCACAGAAAACTCAATCTTTCAAAGAGAAAAAGAAGACGCAGAACTGGTTCCAGAGACGGTTTTCTGGGCAAATGAGTCAAGATTATGATTCTATCGTTGAAATAGAGCATGCAACCGCAGTGGCAGCTGCTGCATTTGCAGTTAAATCAGTCGAAGAATCGGCAGTCTCTGATAAGAAAAGGACAGGCGATGAAACTAGTGACTCTTTGGTGAAGATCAAGAGCAAAAAGGAAGAATCAGCAATTTCAAAGCCAGAACCTGGAAGACTTTCCAAACTATTCTCAGGTGCAGGTTCAACAAAAAGTACCCAAGGAGATCCAGATAGTAAGGTGCCAATAAGTACTTCTCCTACTTATCCAAACGACAAGATCCCGGGAAAGACCATCCTTCCTGCTCCCTCTATCAAACGAACTCCAACGTCTGATGCCATCCTTCCTGCTTCCTCTATTAAACAAACTCCAACGTCTGATGCCATCCATCCTGCCCCATCAATGAAAAAAACTCCAACTTTTGCTGATAAGCCATTGAACAGCACAAGCAGTATAAAACCCGAAACTTCAGCACCAAAACTCGATTTGCCCACCACTACGAAACCTGCTGCACCTGCAAATGAAACCAAATGGCAGAGTGCAGCAAGACCTGGAGTGGTAAAGACAAAAGCAGATAAATGGGAGGAGGCTGAGATGGCTAAACTCAAAGAAAGGTATGAGCGGCAAAATGCTACAATACTTTCCTGGGAGAACAAGAAGAAGAAGAAAAGCAAACTTCGGCTGGAGAAAAGAGAGAGTGAAATAGAGAGAAGAAGAGTAAAAGCGCTACGGAAGTACAACAATGAGATGGAATATATCAAACAGATTGCAGAAGGAGCAAGGGCACAGGCAGAGGAGAAGCGTAGGAATAAAGAACTCAAGGTGAAAGAAAAGGCAAATACACTAAGAAGAACAGGGGAAGAAGCTCCTACAAAATGTTGCTGCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Remorin_C

Protein Analysis

356

Amino Acids

39.82

Weight (kDa)

9.83

Isoelectric Point (pI)

54.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Remorin_C	PF03763	247 - 347	2.4e-27	Remorin, C-terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13920 AT1G13920 AT1G13920 AT1G13920 AT1G13920 AT1G13920 AT1G13920 AT1G69325
fragaria_vesca	FvH4_4g30432 FvH4_4g30432 FvH4_4g30432 FvH4_4g30432
malus_domestica	MD13G1065400.v1.1 MD16G1063900.v1.1
prunus_persica	Prupe.1G282700_v2.0.a1
pyrus_communis	pycom13g05770 pycom16g05600
rosa_chinensis	RchiOBHm_Chr4g0438751
rosa_laevigata	RLG00000006332
rosa_multiflora	Rmu_co8425743.1_g000001 Rmu_sc0002505.1_g000008
rosa_roxburghii	Rroxscaffold_5G00379780
rosa_rugosa	Rorug04G0312900 Rorug04G0312900 Rorug04G0313000 Rorug04G0313000
rosa_samantha	Rh4AG363600 Rh4BG375100 Rh4CG389200 Rh4DG369400
rosa_wichuraiana	Rw0G007210 Rw0G016760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	703
Acc36I	ACCTGC	3 cut(s)	371, 694, 703
AccB1I	GGYRCC	1 cut(s)	421
AccB7I	CCANNNNNTGG	1 cut(s)	350
AccBSI	CCGCTC	1 cut(s)	802
AciI	CCGC	2 cut(s)	207, 802
AclWI	GGATC	2 cut(s)	401, 454
AcuI	CTGAAG	1 cut(s)	633
AfaI	GTAC	3 cut(s)	397, 433, 917
AfeI	AGCGCT	1 cut(s)	906
AfiI	CCNNNNNNNGG	1 cut(s)	350
AgsI	TTSAA	5 cut(s)	112, 191, 339, 387, 619
AhlI	ACTAGT	1 cut(s)	287
AjnI	CCWGG	3 cut(s)	349, 730, 824
AjuI	GAANNNNNNNTTGG	2 cut(s)	418, 450
AluBI	AGCT	2 cut(s)	218, 1046
AluI	AGCT	2 cut(s)	218, 1046
Alw26I	GTCTC	2 cut(s)	139, 262
AlwI	GGATC	2 cut(s)	401, 454
AlwNI	CAGNNNCTG	3 cut(s)	221, 260, 350
Ama87I	CYCGRG	1 cut(s)	463
Aor51HI	AGCGCT	1 cut(s)	906
ApeKI	GCWGC	7 cut(s)	66, 215, 218, 221, 689, 722, 1062
Asp700I	GAANNNNTTC	2 cut(s)	137, 358
AspLEI	GCGC	1 cut(s)	907
AsuC2I	CCSGG	2 cut(s)	464, 465
AsuHPI	GGTGA	3 cut(s)	58, 313, 1015
AvaI	CYCGRG	1 cut(s)	463
BaeGI	GKGCMC	1 cut(s)	967
BanI	GGYRCC	1 cut(s)	421
BbsI	GAAGAC	2 cut(s)	131, 361
BbvI	GCAGC	7 cut(s)	78, 205, 208, 227, 676, 734, 1049
BccI	CCATC	7 cut(s)	482, 527, 572, 576, 586, 769, 922
BciT130I	CCWGG	3 cut(s)	351, 732, 826
BcnI	CCSGG	2 cut(s)	464, 465
BcoDI	GTCTC	2 cut(s)	139, 262
BcuI	ACTAGT	1 cut(s)	287
BfaI	CTAG	1 cut(s)	288
BfoI	RGCGCY	1 cut(s)	908
BfuAI	ACCTGC	3 cut(s)	371, 694, 703
BisI	GCNGC	8 cut(s)	67, 216, 219, 222, 690, 723, 803, 1063
BlsI	GCNGC	8 cut(s)	68, 217, 220, 223, 691, 724, 804, 1064
BmcAI	AGTACT	1 cut(s)	433
Bme1390I	CCNGG	5 cut(s)	351, 464, 465, 732, 826
BmeT110I	CYCGRG	1 cut(s)	463
BmiI	GGNNCC	3 cut(s)	6, 140, 423
BmrFI	CCNGG	5 cut(s)	351, 464, 465, 732, 826
BmsI	GCATC	2 cut(s)	505, 550
BpiI	GAAGAC	2 cut(s)	131, 361
BpmI	CTGGAG	2 cut(s)	753, 884
Bpu10I	CCTNAGC	1 cut(s)	9
BpuEI	CTTGAG	1 cut(s)	983
BpuMI	CCSGG	2 cut(s)	464, 465
BsaJI	CCNNGG	3 cut(s)	400, 463, 825
Bsc4I	CCNNNNNNNGG	1 cut(s)	350
Bse1I	ACTGG	1 cut(s)	140
BseBI	CCWGG	3 cut(s)	351, 732, 826
BseDI	CCNNGG	3 cut(s)	400, 463, 825
BseGI	GGATG	5 cut(s)	27, 474, 519, 564, 568
BseLI	CCNNNNNNNGG	1 cut(s)	350
BseMII	CTCAG	2 cut(s)	387, 762
BseNI	ACTGG	1 cut(s)	140
BseRI	GAGGAG	2 cut(s)	779, 989
BseSI	GKGCMC	1 cut(s)	967
BseXI	GCAGC	7 cut(s)	78, 205, 208, 227, 676, 734, 1049
BsgI	GTGCAG	3 cut(s)	399, 675, 741
BshNI	GGYRCC	1 cut(s)	421
BsiHKCI	CYCGRG	1 cut(s)	463
BsiSI	CCGG	1 cut(s)	464
BslI	CCNNNNNNNGG	1 cut(s)	350
BsmAI	GTCTC	2 cut(s)	139, 262
BsmBI	CGTCTC	1 cut(s)	139
BsoBI	CYCGRG	1 cut(s)	463
Bsp1286I	GDGCHC	1 cut(s)	967
Bsp143I	GATC	4 cut(s)	76, 306, 406, 459
BspACI	CCGC	2 cut(s)	207, 802
BspCNI	CTCAG	2 cut(s)	386, 763
BspLI	GGNNCC	3 cut(s)	6, 140, 423
BspMI	ACCTGC	3 cut(s)	371, 694, 703
BspPI	GGATC	2 cut(s)	401, 454
BspT107I	GGYRCC	1 cut(s)	421
BsrBI	CCGCTC	1 cut(s)	802
BsrI	ACTGG	1 cut(s)	140
BssECI	CCNNGG	3 cut(s)	400, 463, 825
BssMI	GATC	4 cut(s)	76, 306, 406, 459
BssT1I	CCWWGG	1 cut(s)	400
Bst2UI	CCWGG	3 cut(s)	351, 732, 826
Bst4CI	ACNGT	1 cut(s)	150
Bst6I	CTCTTC	2 cut(s)	51, 889
BstAPI	GCANNNNNTGC	1 cut(s)	221
BstC8I	GCNNGC	1 cut(s)	201
BstDEI	CTNAG	4 cut(s)	9, 373, 771, 1025
BstF5I	GGATG	5 cut(s)	27, 474, 519, 564, 568
BstH2I	RGCGCY	1 cut(s)	908
BstHHI	GCGC	1 cut(s)	907
BstKTI	GATC	4 cut(s)	79, 309, 409, 462
BstMAI	GTCTC	2 cut(s)	139, 262
BstMBI	GATC	4 cut(s)	76, 306, 406, 459
BstMWI	GCNNNNNNNGC	6 cut(s)	215, 221, 227, 695, 776, 956
BstNI	CCWGG	3 cut(s)	351, 732, 826
BstNSI	RCATGY	1 cut(s)	203
BstSCI	CCNGG	5 cut(s)	349, 462, 463, 730, 824
BstSLI	GKGCMC	1 cut(s)	967
BstV1I	GCAGC	7 cut(s)	78, 205, 208, 227, 676, 734, 1049
BstV2I	GAAGAC	2 cut(s)	131, 361
BstX2I	RGATCY	2 cut(s)	406, 459
BstYI	RGATCY	2 cut(s)	406, 459
BtgZI	GCGATG	1 cut(s)	294
BtsCI	GGATG	5 cut(s)	27, 474, 519, 564, 568
BtsI	GCAGTG	1 cut(s)	216
BtsIMutI	CAGTG	1 cut(s)	216
BveI	ACCTGC	3 cut(s)	371, 694, 703
Cac8I	GCNNGC	1 cut(s)	201
CaiI	CAGNNNCTG	3 cut(s)	221, 260, 350
CfoI	GCGC	1 cut(s)	907
Cfr9I	CCCGGG	1 cut(s)	463
CseI	GACGC	2 cut(s)	58, 136
Csp6I	GTAC	3 cut(s)	396, 432, 916
CspCI	CAANNNNNGTGG	2 cut(s)	192, 227
CviAII	CATG	1 cut(s)	200
CviJI	RGCY	8 cut(s)	7, 218, 343, 613, 770, 779, 862, 1046
CviKI_1	RGCY	8 cut(s)	7, 218, 343, 613, 770, 779, 862, 1046
CviQI	GTAC	3 cut(s)	396, 432, 916
DdeI	CTNAG	4 cut(s)	9, 373, 771, 1025
DpnI	GATC	4 cut(s)	78, 308, 408, 461
DpnII	GATC	4 cut(s)	76, 306, 406, 459
Eam1104I	CTCTTC	2 cut(s)	51, 889
EarI	CTCTTC	2 cut(s)	51, 889
Eco130I	CCWWGG	1 cut(s)	400
Eco47III	AGCGCT	1 cut(s)	906
Eco57I	CTGAAG	1 cut(s)	633
Eco88I	CYCGRG	1 cut(s)	463
EcoRII	CCWGG	3 cut(s)	349, 730, 824
EcoT14I	CCWWGG	1 cut(s)	400
ErhI	CCWWGG	1 cut(s)	400
Esp3I	CGTCTC	1 cut(s)	139
FaeI	CATG	1 cut(s)	203
FaiI	YATR	5 cut(s)	177, 201, 635, 798, 936
FatI	CATG	1 cut(s)	199
Fnu4HI	GCNGC	8 cut(s)	67, 216, 219, 222, 690, 723, 803, 1063
FokI	GGATG	5 cut(s)	34, 461, 506, 551, 555
Fsp4HI	GCNGC	8 cut(s)	67, 216, 219, 222, 690, 723, 803, 1063
FspBI	CTAG	1 cut(s)	288
GlaI	GCGC	1 cut(s)	906
GluI	GCNGC	8 cut(s)	67, 216, 219, 222, 690, 723, 803, 1063
GsuI	CTGGAG	2 cut(s)	753, 884
HaeII	RGCGCY	1 cut(s)	908
HapII	CCGG	1 cut(s)	464
HgaI	GACGC	2 cut(s)	58, 136
HhaI	GCGC	1 cut(s)	907
Hin1II	CATG	1 cut(s)	203
Hin6I	GCGC	1 cut(s)	905
HinP1I	GCGC	1 cut(s)	905
HinfI	GANTC	6 cut(s)	59, 166, 179, 248, 293, 326
HpaII	CCGG	1 cut(s)	464
HphI	GGTGA	3 cut(s)	58, 313, 1015
Hpy188I	TCNGA	3 cut(s)	262, 514, 559
Hpy188III	TCNNGA	4 cut(s)	142, 170, 310, 410
HpyAV	CCTTC	3 cut(s)	488, 533, 947
HpyCH4III	ACNGT	1 cut(s)	150
HpyCH4IV	ACGT	2 cut(s)	509, 554
HpyCH4V	TGCA	8 cut(s)	203, 224, 230, 380, 692, 698, 722, 950
HpyF10VI	GCNNNNNNNGC	6 cut(s)	215, 221, 227, 695, 776, 956
HpyF3I	CTNAG	4 cut(s)	9, 373, 771, 1025
HpySE526I	ACGT	2 cut(s)	509, 554
Hsp92II	CATG	1 cut(s)	203
HspAI	GCGC	1 cut(s)	905
Kzo9I	GATC	4 cut(s)	76, 306, 406, 459
LmnI	GCTCC	4 cut(s)	4, 490, 956, 1051
Lsp1109I	GCAGC	7 cut(s)	78, 205, 208, 227, 676, 734, 1049
LweI	GCATC	2 cut(s)	505, 550
MaeI	CTAG	1 cut(s)	288
MaeII	ACGT	2 cut(s)	509, 554
MaeIII	GTNAC	1 cut(s)	290
MalI	GATC	4 cut(s)	78, 308, 408, 461
MbiI	CCGCTC	1 cut(s)	802
MboI	GATC	4 cut(s)	76, 306, 406, 459
MflI	RGATCY	2 cut(s)	406, 459
MhlI	GDGCHC	1 cut(s)	967
MluCI	AATT	1 cut(s)	333
MlyI	GAGTC	3 cut(s)	68, 175, 287
MmeI	TCCRAC	3 cut(s)	530, 575, 620
MnlI	CCTC	6 cut(s)	12, 499, 544, 757, 760, 967
MroXI	GAANNNNTTC	2 cut(s)	137, 358
MseI	TTAA	2 cut(s)	234, 540
MspA1I	CMGCKG	1 cut(s)	218
MspI	CCGG	1 cut(s)	464
MspR9I	CCNGG	5 cut(s)	351, 464, 465, 732, 826
MvaI	CCWGG	3 cut(s)	351, 732, 826
MwoI	GCNNNNNNNGC	6 cut(s)	215, 221, 227, 695, 776, 956
NciI	CCSGG	2 cut(s)	464, 465
NdeII	GATC	4 cut(s)	76, 306, 406, 459
NlaIII	CATG	1 cut(s)	203
NlaIV	GGNNCC	3 cut(s)	6, 140, 423
NmuCI	GTSAC	1 cut(s)	290
NspI	RCATGY	1 cut(s)	203
PaeI	GCATGC	1 cut(s)	203
PaqCI	CACCTGC	1 cut(s)	703
PdmI	GAANNNNTTC	2 cut(s)	137, 358
PfeI	GAWTC	3 cut(s)	179, 248, 326
PflMI	CCANNNNNTGG	1 cut(s)	350
PkrI	GCNGC	8 cut(s)	68, 217, 220, 223, 691, 724, 804, 1064
PleI	GAGTC	3 cut(s)	67, 174, 287
PpsI	GAGTC	3 cut(s)	67, 174, 287
Psp6I	CCWGG	3 cut(s)	349, 730, 824
PspGI	CCWGG	3 cut(s)	349, 730, 824
PspN4I	GGNNCC	3 cut(s)	6, 140, 423
PstNI	CAGNNNCTG	3 cut(s)	221, 260, 350
PsuI	RGATCY	2 cut(s)	406, 459
PvuII	CAGCTG	1 cut(s)	218
RsaI	GTAC	3 cut(s)	397, 433, 917
RsaNI	GTAC	3 cut(s)	396, 432, 916
SaqAI	TTAA	2 cut(s)	234, 540
SatI	GCNGC	8 cut(s)	67, 216, 219, 222, 690, 723, 803, 1063
Sau3AI	GATC	4 cut(s)	76, 306, 406, 459
ScaI	AGTACT	1 cut(s)	433
SchI	GAGTC	3 cut(s)	68, 175, 287
ScrFI	CCNGG	5 cut(s)	351, 464, 465, 732, 826
SduI	GDGCHC	1 cut(s)	967
SfaNI	GCATC	2 cut(s)	505, 550
SmaI	CCCGGG	1 cut(s)	465
SmlI	CTYRAG	1 cut(s)	998
SmoI	CTYRAG	1 cut(s)	998
SpeI	ACTAGT	1 cut(s)	287
SphI	GCATGC	1 cut(s)	203
Sse9I	AATT	1 cut(s)	333
SsiI	CCGC	2 cut(s)	207, 802
SspMI	CTAG	1 cut(s)	288
StyD4I	CCNGG	5 cut(s)	349, 462, 463, 730, 824
StyI	CCWWGG	1 cut(s)	400
TaaI	ACNGT	1 cut(s)	150
TaiI	ACGT	2 cut(s)	512, 557
TaqI	TCGA	3 cut(s)	79, 243, 663
TasI	AATT	1 cut(s)	333
TatI	WGTACW	2 cut(s)	431, 915
TauI	GCSGC	1 cut(s)	805
TfiI	GAWTC	3 cut(s)	179, 248, 326
Tru1I	TTAA	2 cut(s)	234, 540
Tru9I	TTAA	2 cut(s)	234, 540
TscAI	CASTG	1 cut(s)	216
TseFI	GTSAC	1 cut(s)	290
TseI	GCWGC	7 cut(s)	66, 215, 218, 221, 689, 722, 1062
Tsp45I	GTSAC	1 cut(s)	290
TspDTI	ATGAA	3 cut(s)	297, 599, 717
TspGWI	ACGGA	1 cut(s)	925
TspMI	CCCGGG	1 cut(s)	463
TspRI	CASTG	1 cut(s)	216
Van91I	CCANNNNNTGG	1 cut(s)	350
XceI	RCATGY	1 cut(s)	203
XmaI	CCCGGG	1 cut(s)	463
XmnI	GAANNNNTTC	2 cut(s)	137, 358
XspI	CTAG	1 cut(s)	288
ZrmI	AGTACT	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.