Rorug04G0312900

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0004384
Physical Location & Seq
Reverse (-)
48813623 .. 48815961
2339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0312900.1

Sequence Viewer

Length: 591 bp
ATGGCTTCAATCTCAGCCATTGGATCTCCTCAGCGGCCTCTAACCTCATCGGTCGGAAAATCTCGAACCCGTGTACGGCGCGGACCCAAATCTTTTCTTCCCCCGGAAGCCGAGAAATCTTCTGATTCAGGTGCAGGCGGCGGAAGCAATCTTATCGAGCGAAGAAAACTTGTGTTTTCATCCATCGGAACTGTAGCTGCGGCTTTCTGTAATGCTTTTAAGGATAAACTCGCCCTGGCATCTCAGTTTGCAGACATGCCAGCAATTAGAGGAAAGGACTACGGCAAGTCGAAGATGAGTTATCCGGACTACACCGAAACTGACTCGGGTCTTCAGTATAAGGACTTGCGAGCAGGAGATGGCCCCAAACCCAAGGTTGGGGATACAGTAGTGATTGATTGGGATGGTTATACCATTGGATACTACGGTCGTATATTTGAAGCTCGAAATAAAACAAAAGGTGGTTCATTTGAGGGTGATGACAAGGCTTTTTTCAAATTCAGAGTAGGATCTCAAGAGGTGATACCAGCTTTTGAGGAAGCTATTGCAGGCATGTCTCTTGGTGGCGTTAGAAGTGATGCAGGATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

196

Amino Acids

20.92

Weight (kDa)

9.36

Isoelectric Point (pI)

44.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FKBP_C PF00254 123 - 191 1.1e-06 FKBP-type peptidyl-prolyl cis-trans isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 81
AccIII TCCGGA 1 cut(s) 304
AciI CCGC 5 cut(s) 34, 81, 138, 141, 200
AclWI GGATC 2 cut(s) 31, 517
AcsI RAATTY 1 cut(s) 497
AcuI CTGAAG 1 cut(s) 317
AfaI GTAC 1 cut(s) 75
AfiI CCNNNNNNNGG 3 cut(s) 75, 377, 378
AgsI TTSAA 3 cut(s) 9, 440, 496
AjnI CCWGG 1 cut(s) 234
AluBI AGCT 4 cut(s) 197, 443, 530, 542
AluI AGCT 4 cut(s) 197, 443, 530, 542
Alw26I GTCTC 1 cut(s) 561
AlwI GGATC 2 cut(s) 31, 517
Ama87I CYCGRG 1 cut(s) 325
Aor13HI TCCGGA 1 cut(s) 304
AoxI GGCC 2 cut(s) 35, 361
ApeKI GCWGC 1 cut(s) 197
ApoI RAATTY 1 cut(s) 497
AspLEI GCGC 1 cut(s) 81
AspS9I GGNCC 2 cut(s) 83, 362
AsuC2I CCSGG 1 cut(s) 104
AsuHPI GGTGA 2 cut(s) 488, 532
AvaI CYCGRG 1 cut(s) 325
AvaII GGWCC 1 cut(s) 83
BaeI ACNNNNGTAYC 4 cut(s) 375, 408, 412, 445
BbsI GAAGAC 1 cut(s) 323
BbvCI CCTCAGC 1 cut(s) 30
BbvI GCAGC 1 cut(s) 184
BccI CCATC 3 cut(s) 191, 353, 398
BceAI ACGGC 2 cut(s) 92, 298
BcgI CGANNNNNNTGC 2 cut(s) 136, 170
BciT130I CCWGG 1 cut(s) 236
BciVI GTATCC 2 cut(s) 376, 413
BcnI CCSGG 1 cut(s) 104
BcoDI GTCTC 1 cut(s) 561
BfmI CTRYAG 1 cut(s) 192
BfuI GTATCC 2 cut(s) 376, 413
BisI GCNGC 4 cut(s) 35, 139, 198, 201
BlsI GCNGC 4 cut(s) 36, 140, 199, 202
Bme1390I CCNGG 2 cut(s) 104, 236
Bme18I GGWCC 1 cut(s) 83
BmeT110I CYCGRG 1 cut(s) 325
BmgT120I GGNCC 2 cut(s) 83, 362
BmiI GGNNCC 2 cut(s) 85, 364
BmrFI CCNGG 2 cut(s) 104, 236
BmsI GCATC 2 cut(s) 248, 568
BoxI GACNNNNGTC 1 cut(s) 327
BpiI GAAGAC 1 cut(s) 323
Bpu10I CCTNAGC 1 cut(s) 30
BpuEI CTTGAG 1 cut(s) 498
BpuMI CCSGG 1 cut(s) 104
BsaJI CCNNGG 3 cut(s) 102, 234, 372
BsaWI WCCGGW 1 cut(s) 304
Bsc4I CCNNNNNNNGG 3 cut(s) 75, 377, 378
BseAI TCCGGA 1 cut(s) 304
BseBI CCWGG 1 cut(s) 236
BseDI CCNNGG 3 cut(s) 102, 234, 372
BseGI GGATG 2 cut(s) 179, 409
BseLI CCNNNNNNNGG 3 cut(s) 75, 377, 378
BseMII CTCAG 3 cut(s) 27, 44, 257
BseRI GAGGAG 1 cut(s) 18
BseXI GCAGC 1 cut(s) 184
BsgI GTGCAG 1 cut(s) 153
Bsh1236I CGCG 1 cut(s) 81
Bsh1285I CGRYCG 2 cut(s) 54, 430
BshFI GGCC 2 cut(s) 37, 363
BsiEI CGRYCG 2 cut(s) 54, 430
BsiHKCI CYCGRG 1 cut(s) 325
BsiSI CCGG 2 cut(s) 104, 305
BslI CCNNNNNNNGG 3 cut(s) 75, 377, 378
BsmAI GTCTC 1 cut(s) 561
BsnI GGCC 2 cut(s) 37, 363
BsoBI CYCGRG 1 cut(s) 325
Bsp13I TCCGGA 1 cut(s) 304
Bsp143I GATC 3 cut(s) 23, 509, 584
BspACI CCGC 5 cut(s) 34, 81, 138, 141, 200
BspANI GGCC 2 cut(s) 37, 363
BspCNI CTCAG 3 cut(s) 26, 43, 256
BspEI TCCGGA 1 cut(s) 304
BspFNI CGCG 1 cut(s) 81
BspLI GGNNCC 2 cut(s) 85, 364
BspPI GGATC 2 cut(s) 31, 517
BssECI CCNNGG 3 cut(s) 102, 234, 372
BssMI GATC 3 cut(s) 23, 509, 584
BssT1I CCWWGG 1 cut(s) 372
Bst2UI CCWGG 1 cut(s) 236
Bst4CI ACNGT 3 cut(s) 193, 388, 428
BstC8I GCNNGC 4 cut(s) 136, 261, 351, 550
BstDEI CTNAG 3 cut(s) 13, 30, 243
BstF5I GGATG 2 cut(s) 179, 409
BstFNI CGCG 1 cut(s) 81
BstHHI GCGC 1 cut(s) 81
BstKTI GATC 3 cut(s) 26, 512, 587
BstMAI GTCTC 1 cut(s) 561
BstMBI GATC 3 cut(s) 23, 509, 584
BstMCI CGRYCG 2 cut(s) 54, 430
BstMWI GCNNNNNNNGC 1 cut(s) 144
BstNI CCWGG 1 cut(s) 236
BstNSI RCATGY 2 cut(s) 259, 556
BstPAI GACNNNNGTC 1 cut(s) 327
BstSCI CCNGG 2 cut(s) 102, 234
BstSFI CTRYAG 1 cut(s) 192
BstUI CGCG 1 cut(s) 81
BstV1I GCAGC 1 cut(s) 184
BstV2I GAAGAC 1 cut(s) 323
BstX2I RGATCY 2 cut(s) 23, 509
BstYI RGATCY 2 cut(s) 23, 509
BsuI GTATCC 2 cut(s) 376, 413
BsuRI GGCC 2 cut(s) 37, 363
BtsCI GGATG 2 cut(s) 179, 409
Cac8I GCNNGC 4 cut(s) 136, 261, 351, 550
CfoI GCGC 1 cut(s) 81
Cfr13I GGNCC 2 cut(s) 83, 362
Csp6I GTAC 1 cut(s) 74
CviAII CATG 2 cut(s) 256, 553
CviQI GTAC 1 cut(s) 74
DdeI CTNAG 3 cut(s) 13, 30, 243
DpnI GATC 3 cut(s) 25, 511, 586
DpnII GATC 3 cut(s) 23, 509, 584
EciI GGCGGA 1 cut(s) 156
Eco130I CCWWGG 1 cut(s) 372
Eco47I GGWCC 1 cut(s) 83
Eco57I CTGAAG 1 cut(s) 317
Eco88I CYCGRG 1 cut(s) 325
EcoRII CCWGG 1 cut(s) 234
EcoT14I CCWWGG 1 cut(s) 372
ErhI CCWWGG 1 cut(s) 372
FaeI CATG 2 cut(s) 259, 556
FaiI YATR 6 cut(s) 257, 339, 411, 434, 554, 589
FatI CATG 2 cut(s) 255, 552
Fnu4HI GCNGC 4 cut(s) 35, 139, 198, 201
FokI GGATG 2 cut(s) 166, 416
Fsp4HI GCNGC 4 cut(s) 35, 139, 198, 201
GlaI GCGC 1 cut(s) 80
GluI GCNGC 4 cut(s) 35, 139, 198, 201
HaeIII GGCC 2 cut(s) 37, 363
HapII CCGG 2 cut(s) 104, 305
HhaI GCGC 1 cut(s) 81
Hin1II CATG 2 cut(s) 259, 556
Hin6I GCGC 1 cut(s) 79
HinP1I GCGC 1 cut(s) 79
HinfI GANTC 2 cut(s) 125, 323
HpaII CCGG 2 cut(s) 104, 305
HphI GGTGA 2 cut(s) 488, 532
Hpy166II GTNNAC 1 cut(s) 74
Hpy188I TCNGA 4 cut(s) 56, 124, 188, 503
Hpy188III TCNNGA 3 cut(s) 63, 305, 515
Hpy8I GTNNAC 1 cut(s) 74
HpyCH4III ACNGT 3 cut(s) 193, 388, 428
HpyCH4V TGCA 4 cut(s) 134, 251, 548, 581
HpyF10VI GCNNNNNNNGC 1 cut(s) 144
HpyF3I CTNAG 3 cut(s) 13, 30, 243
Hsp92II CATG 2 cut(s) 259, 556
HspAI GCGC 1 cut(s) 79
Kpn2I TCCGGA 1 cut(s) 304
Kzo9I GATC 3 cut(s) 23, 509, 584
Lsp1109I GCAGC 1 cut(s) 184
LweI GCATC 2 cut(s) 248, 568
MalI GATC 3 cut(s) 25, 511, 586
MboI GATC 3 cut(s) 23, 509, 584
MboII GAAGA 5 cut(s) 89, 111, 174, 304, 323
MflI RGATCY 2 cut(s) 23, 509
MluCI AATT 2 cut(s) 264, 497
MlyI GAGTC 1 cut(s) 317
MmeI TCCRAC 1 cut(s) 34
MnlI CCTC 7 cut(s) 39, 48, 55, 263, 466, 511, 529
MroI TCCGGA 1 cut(s) 304
MseI TTAA 1 cut(s) 219
MspA1I CMGCKG 1 cut(s) 34
MspI CCGG 2 cut(s) 104, 305
MspR9I CCNGG 2 cut(s) 104, 236
MvaI CCWGG 1 cut(s) 236
MvnI CGCG 1 cut(s) 81
MwoI GCNNNNNNNGC 1 cut(s) 144
NciI CCSGG 1 cut(s) 104
NdeII GATC 3 cut(s) 23, 509, 584
NlaIII CATG 2 cut(s) 259, 556
NlaIV GGNNCC 2 cut(s) 85, 364
NmeAIII GCCGAG 1 cut(s) 136
NspI RCATGY 2 cut(s) 259, 556
PfeI GAWTC 1 cut(s) 125
PkrI GCNGC 4 cut(s) 36, 140, 199, 202
PleI GAGTC 1 cut(s) 317
PpsI GAGTC 1 cut(s) 317
PshAI GACNNNNGTC 1 cut(s) 327
Psp6I CCWGG 1 cut(s) 234
PspGI CCWGG 1 cut(s) 234
PspN4I GGNNCC 2 cut(s) 85, 364
PspPI GGNCC 2 cut(s) 83, 362
PsuI RGATCY 2 cut(s) 23, 509
RsaI GTAC 1 cut(s) 75
RsaNI GTAC 1 cut(s) 74
SaqAI TTAA 1 cut(s) 219
SatI GCNGC 4 cut(s) 35, 139, 198, 201
Sau3AI GATC 3 cut(s) 23, 509, 584
Sau96I GGNCC 2 cut(s) 83, 362
SchI GAGTC 1 cut(s) 317
ScrFI CCNGG 2 cut(s) 104, 236
SetI ASST 9 cut(s) 47, 133, 199, 378, 445, 463, 522, 532, 544
SfaNI GCATC 2 cut(s) 248, 568
SfcI CTRYAG 1 cut(s) 192
SinI GGWCC 1 cut(s) 83
SmlI CTYRAG 1 cut(s) 513
SmoI CTYRAG 1 cut(s) 513
Sse9I AATT 2 cut(s) 264, 497
SsiI CCGC 5 cut(s) 34, 81, 138, 141, 200
StyD4I CCNGG 2 cut(s) 102, 234
StyI CCWWGG 1 cut(s) 372
TaaI ACNGT 3 cut(s) 193, 388, 428
TaqI TCGA 4 cut(s) 64, 156, 290, 445
TaqII GACCGA 1 cut(s) 40
TasI AATT 2 cut(s) 264, 497
TauI GCSGC 3 cut(s) 37, 141, 203
TfiI GAWTC 1 cut(s) 125
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TseI GCWGC 1 cut(s) 197
TspDTI ATGAA 2 cut(s) 168, 456
VpaK11BI GGWCC 1 cut(s) 83
XapI RAATTY 1 cut(s) 497
XceI RCATGY 2 cut(s) 259, 556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.