Rh4BG375100

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0004384
Physical Location & Seq
Forward (+)
53108552 .. 53110246
1695 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG375100.1

Sequence Viewer

Length: 1005 bp
ATGGAGCCTAAGCAAATGAGGGTGAGATTTTCTGGTGTAAATCAGGTGAAAACAGAAGAGTCCGGCAGCGTCATTGATCGAAGAATACCACCACAGAAAACTCAATCTTTCAAAGAGAAAAAGAAGACGCAGAACTGGTTCCAGAGACGGTTTTCTGGGCAAATGAGTCAAGATTATGATTCTATCGTTGAAATAGAGCATGCAACCGCAGTGGCAGCTGCCGCATTTGCAGTTAAATCAATCGAAGAATCGGCAGTCTCTGACAAGAAAAGGACAGGCGATGAAACTAGTGACTCTTTGGTGAAGATCAAGAGCAAAAAGGAAGAAACAACGATTTCAAAGCCAGAACCTGGAAGACTTTCCAAACTATTCTCAGGTTTAACAAAAAGTACTCAAGAAGATCCAGATAGTAAGGTGCCAATAAGTACTTCTCCTACTTTTCCAAACGACAAGATCCCGGGAAAGACCATCCTTCCTGCTCCCTCTATCAAACGAACTCCAACGTCTGATGCCATCCTTCCTGCTTCTATCAAACGAACTCCAACGTCTGATGCCATCCATCCTGCCCCATCAATGAAAAAAACTCCAACTTTTGCTGATAAGCCATTGAACAGCACAAGCAGTATAAAACCCGAAACTTCAGCACCAAAACTCAATTTGCCCACCACTATGAAACCTGCTGCACCTGCAAATGAAACCAAAGGGCAGAGTGCAGCAAGACCTGGAGTGGTAAAGACAAAAGCAGATAAATGGGAGGAGGCTGAGATGGCTAAACTCAAAGAAAGGACTAATACAAACTTGAAAATGCAGAGTGAAATAGAGAGAAGAAGAGTAAAAGCGCTACAAAAGTACAACAATGAGATGGAATTTATCAAACAGATTGCAGAAGGAGCAAGGGCACAGGCAGAGGAGAAGCGTAGGAATAAAGAACTCAAGGTGAAAGAAAAGGCAAATACACTAAGAAGAACAGGGGAAGAAGCTCCTACAACATGTTGCTGCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

334

Amino Acids

37.12

Weight (kDa)

9.76

Isoelectric Point (pI)

57.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 268 - 325 7.2e-13 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 694
Acc36I ACCTGC 2 cut(s) 685, 694
AccB1I GGYRCC 1 cut(s) 415
AccB7I CCANNNNNTGG 1 cut(s) 350
AciI CCGC 2 cut(s) 207, 222
AclWI GGATC 2 cut(s) 395, 448
AcsI RAATTY 1 cut(s) 866
AcuI CTGAAG 1 cut(s) 624
AfaI GTAC 3 cut(s) 391, 427, 851
AfeI AGCGCT 1 cut(s) 840
AfiI CCNNNNNNNGG 1 cut(s) 350
AflIII ACRYGT 1 cut(s) 989
AgsI TTSAA 5 cut(s) 112, 191, 339, 610, 802
AhlI ACTAGT 1 cut(s) 287
AjnI CCWGG 2 cut(s) 349, 721
AjuI GAANNNNNNNTTGG 2 cut(s) 412, 444
AluBI AGCT 2 cut(s) 218, 980
AluI AGCT 2 cut(s) 218, 980
Alw26I GTCTC 2 cut(s) 139, 262
AlwI GGATC 2 cut(s) 395, 448
AlwNI CAGNNNCTG 2 cut(s) 260, 350
Ama87I CYCGRG 1 cut(s) 457
Aor51HI AGCGCT 1 cut(s) 840
ApeKI GCWGC 6 cut(s) 66, 215, 218, 680, 713, 996
ApoI RAATTY 1 cut(s) 866
Asp700I GAANNNNTTC 2 cut(s) 137, 358
AspLEI GCGC 1 cut(s) 841
AsuC2I CCSGG 2 cut(s) 458, 459
AsuHPI GGTGA 4 cut(s) 34, 58, 313, 949
AvaI CYCGRG 1 cut(s) 457
BaeGI GKGCMC 1 cut(s) 901
BanI GGYRCC 1 cut(s) 415
BbsI GAAGAC 2 cut(s) 131, 361
BbvI GCAGC 6 cut(s) 78, 205, 227, 667, 725, 983
BccI CCATC 7 cut(s) 476, 521, 563, 567, 577, 760, 856
BciT130I CCWGG 2 cut(s) 351, 723
BcnI CCSGG 2 cut(s) 458, 459
BcoDI GTCTC 2 cut(s) 139, 262
BcuI ACTAGT 1 cut(s) 287
BfaI CTAG 1 cut(s) 288
BfoI RGCGCY 1 cut(s) 842
BfuAI ACCTGC 2 cut(s) 685, 694
BisI GCNGC 7 cut(s) 67, 216, 219, 222, 681, 714, 997
BlsI GCNGC 7 cut(s) 68, 217, 220, 223, 682, 715, 998
BmcAI AGTACT 2 cut(s) 391, 427
Bme1390I CCNGG 4 cut(s) 351, 458, 459, 723
BmeT110I CYCGRG 1 cut(s) 457
BmiI GGNNCC 3 cut(s) 6, 140, 417
BmrFI CCNGG 4 cut(s) 351, 458, 459, 723
BmsI GCATC 2 cut(s) 499, 541
BpiI GAAGAC 2 cut(s) 131, 361
BpmI CTGGAG 1 cut(s) 744
Bpu10I CCTNAGC 1 cut(s) 9
BpuEI CTTGAG 2 cut(s) 378, 917
BpuMI CCSGG 2 cut(s) 458, 459
BsaJI CCNNGG 1 cut(s) 457
Bsc4I CCNNNNNNNGG 1 cut(s) 350
Bse1I ACTGG 1 cut(s) 140
BseBI CCWGG 2 cut(s) 351, 723
BseDI CCNNGG 1 cut(s) 457
BseGI GGATG 4 cut(s) 468, 513, 555, 559
BseLI CCNNNNNNNGG 1 cut(s) 350
BseMII CTCAG 2 cut(s) 387, 753
BseNI ACTGG 1 cut(s) 140
BseRI GAGGAG 2 cut(s) 770, 923
BseSI GKGCMC 1 cut(s) 901
BseXI GCAGC 6 cut(s) 78, 205, 227, 667, 725, 983
BsgI GTGCAG 2 cut(s) 666, 732
BshNI GGYRCC 1 cut(s) 415
BsiHKCI CYCGRG 1 cut(s) 457
BsiSI CCGG 2 cut(s) 63, 458
BslI CCNNNNNNNGG 1 cut(s) 350
BsmAI GTCTC 2 cut(s) 139, 262
BsmBI CGTCTC 1 cut(s) 139
BsoBI CYCGRG 1 cut(s) 457
Bsp1286I GDGCHC 1 cut(s) 901
Bsp143I GATC 4 cut(s) 76, 306, 400, 453
BspACI CCGC 2 cut(s) 207, 222
BspCNI CTCAG 2 cut(s) 386, 754
BspLI GGNNCC 3 cut(s) 6, 140, 417
BspMI ACCTGC 2 cut(s) 685, 694
BspPI GGATC 2 cut(s) 395, 448
BspT107I GGYRCC 1 cut(s) 415
BsrI ACTGG 1 cut(s) 140
BssECI CCNNGG 1 cut(s) 457
BssMI GATC 4 cut(s) 76, 306, 400, 453
Bst2UI CCWGG 2 cut(s) 351, 723
Bst4CI ACNGT 1 cut(s) 150
Bst6I CTCTTC 2 cut(s) 51, 823
BstC8I GCNNGC 1 cut(s) 201
BstDEI CTNAG 4 cut(s) 9, 373, 762, 959
BstF5I GGATG 4 cut(s) 468, 513, 555, 559
BstH2I RGCGCY 1 cut(s) 842
BstHHI GCGC 1 cut(s) 841
BstKTI GATC 4 cut(s) 79, 309, 403, 456
BstMAI GTCTC 2 cut(s) 139, 262
BstMBI GATC 4 cut(s) 76, 306, 400, 453
BstMWI GCNNNNNNNGC 6 cut(s) 215, 221, 227, 686, 767, 890
BstNI CCWGG 2 cut(s) 351, 723
BstNSI RCATGY 2 cut(s) 203, 993
BstSCI CCNGG 4 cut(s) 349, 456, 457, 721
BstSLI GKGCMC 1 cut(s) 901
BstV1I GCAGC 6 cut(s) 78, 205, 227, 667, 725, 983
BstV2I GAAGAC 2 cut(s) 131, 361
BstX2I RGATCY 2 cut(s) 400, 453
BstYI RGATCY 2 cut(s) 400, 453
BtgZI GCGATG 1 cut(s) 294
BtsCI GGATG 4 cut(s) 468, 513, 555, 559
BtsI GCAGTG 1 cut(s) 216
BtsIMutI CAGTG 1 cut(s) 216
BveI ACCTGC 2 cut(s) 685, 694
Cac8I GCNNGC 1 cut(s) 201
CaiI CAGNNNCTG 2 cut(s) 260, 350
CfoI GCGC 1 cut(s) 841
Cfr9I CCCGGG 1 cut(s) 457
CseI GACGC 2 cut(s) 58, 136
Csp6I GTAC 3 cut(s) 390, 426, 850
CspCI CAANNNNNGTGG 2 cut(s) 192, 227
CviAII CATG 2 cut(s) 200, 990
CviJI RGCY 7 cut(s) 7, 218, 343, 604, 761, 770, 980
CviKI_1 RGCY 7 cut(s) 7, 218, 343, 604, 761, 770, 980
CviQI GTAC 3 cut(s) 390, 426, 850
DdeI CTNAG 4 cut(s) 9, 373, 762, 959
DpnI GATC 4 cut(s) 78, 308, 402, 455
DpnII GATC 4 cut(s) 76, 306, 400, 453
Eam1104I CTCTTC 2 cut(s) 51, 823
EarI CTCTTC 2 cut(s) 51, 823
Eco47III AGCGCT 1 cut(s) 840
Eco57I CTGAAG 1 cut(s) 624
Eco88I CYCGRG 1 cut(s) 457
EcoRII CCWGG 2 cut(s) 349, 721
Esp3I CGTCTC 1 cut(s) 139
FaeI CATG 2 cut(s) 203, 993
FaiI YATR 5 cut(s) 177, 201, 626, 671, 991
FatI CATG 2 cut(s) 199, 989
Fnu4HI GCNGC 7 cut(s) 67, 216, 219, 222, 681, 714, 997
FokI GGATG 4 cut(s) 455, 500, 542, 546
Fsp4HI GCNGC 7 cut(s) 67, 216, 219, 222, 681, 714, 997
FspBI CTAG 1 cut(s) 288
GlaI GCGC 1 cut(s) 840
GluI GCNGC 7 cut(s) 67, 216, 219, 222, 681, 714, 997
GsuI CTGGAG 1 cut(s) 744
HaeII RGCGCY 1 cut(s) 842
HapII CCGG 2 cut(s) 63, 458
HgaI GACGC 2 cut(s) 58, 136
HhaI GCGC 1 cut(s) 841
Hin1II CATG 2 cut(s) 203, 993
Hin6I GCGC 1 cut(s) 839
HinP1I GCGC 1 cut(s) 839
HinfI GANTC 5 cut(s) 59, 166, 179, 248, 293
HpaII CCGG 2 cut(s) 63, 458
HphI GGTGA 4 cut(s) 34, 58, 313, 949
Hpy188I TCNGA 3 cut(s) 262, 508, 550
Hpy188III TCNNGA 5 cut(s) 142, 170, 310, 395, 404
HpyAV CCTTC 3 cut(s) 482, 527, 881
HpyCH4III ACNGT 1 cut(s) 150
HpyCH4IV ACGT 2 cut(s) 503, 545
HpyCH4V TGCA 7 cut(s) 203, 230, 683, 689, 713, 808, 884
HpyF10VI GCNNNNNNNGC 6 cut(s) 215, 221, 227, 686, 767, 890
HpyF3I CTNAG 4 cut(s) 9, 373, 762, 959
HpySE526I ACGT 2 cut(s) 503, 545
Hsp92II CATG 2 cut(s) 203, 993
HspAI GCGC 1 cut(s) 839
Kzo9I GATC 4 cut(s) 76, 306, 400, 453
LmnI GCTCC 4 cut(s) 4, 484, 890, 985
Lsp1109I GCAGC 6 cut(s) 78, 205, 227, 667, 725, 983
LweI GCATC 2 cut(s) 499, 541
MaeI CTAG 1 cut(s) 288
MaeII ACGT 2 cut(s) 503, 545
MaeIII GTNAC 1 cut(s) 290
MalI GATC 4 cut(s) 78, 308, 402, 455
MboI GATC 4 cut(s) 76, 306, 400, 453
MflI RGATCY 2 cut(s) 400, 453
MhlI GDGCHC 1 cut(s) 901
MluCI AATT 2 cut(s) 655, 866
MlyI GAGTC 3 cut(s) 68, 175, 287
MmeI TCCRAC 3 cut(s) 524, 566, 611
MnlI CCTC 5 cut(s) 12, 493, 748, 751, 901
MroXI GAANNNNTTC 2 cut(s) 137, 358
MseI TTAA 2 cut(s) 234, 380
MslI CAYNNNNRTG 1 cut(s) 668
MspA1I CMGCKG 1 cut(s) 218
MspI CCGG 2 cut(s) 63, 458
MspR9I CCNGG 4 cut(s) 351, 458, 459, 723
MvaI CCWGG 2 cut(s) 351, 723
MwoI GCNNNNNNNGC 6 cut(s) 215, 221, 227, 686, 767, 890
NciI CCSGG 2 cut(s) 458, 459
NdeII GATC 4 cut(s) 76, 306, 400, 453
NlaIII CATG 2 cut(s) 203, 993
NlaIV GGNNCC 3 cut(s) 6, 140, 417
NmuCI GTSAC 1 cut(s) 290
NspI RCATGY 2 cut(s) 203, 993
PaeI GCATGC 1 cut(s) 203
PaqCI CACCTGC 1 cut(s) 694
PciI ACATGT 1 cut(s) 989
PdmI GAANNNNTTC 2 cut(s) 137, 358
PfeI GAWTC 2 cut(s) 179, 248
PflMI CCANNNNNTGG 1 cut(s) 350
PkrI GCNGC 7 cut(s) 68, 217, 220, 223, 682, 715, 998
PleI GAGTC 3 cut(s) 67, 174, 287
PpsI GAGTC 3 cut(s) 67, 174, 287
PscI ACATGT 1 cut(s) 989
Psp6I CCWGG 2 cut(s) 349, 721
PspGI CCWGG 2 cut(s) 349, 721
PspN4I GGNNCC 3 cut(s) 6, 140, 417
PstNI CAGNNNCTG 2 cut(s) 260, 350
PsuI RGATCY 2 cut(s) 400, 453
PvuII CAGCTG 1 cut(s) 218
RsaI GTAC 3 cut(s) 391, 427, 851
RsaNI GTAC 3 cut(s) 390, 426, 850
RseI CAYNNNNRTG 1 cut(s) 668
SaqAI TTAA 2 cut(s) 234, 380
SatI GCNGC 7 cut(s) 67, 216, 219, 222, 681, 714, 997
Sau3AI GATC 4 cut(s) 76, 306, 400, 453
ScaI AGTACT 2 cut(s) 391, 427
SchI GAGTC 3 cut(s) 68, 175, 287
ScrFI CCNGG 4 cut(s) 351, 458, 459, 723
SduI GDGCHC 1 cut(s) 901
SfaNI GCATC 2 cut(s) 499, 541
SmaI CCCGGG 1 cut(s) 459
SmiMI CAYNNNNRTG 1 cut(s) 668
SmlI CTYRAG 2 cut(s) 393, 932
SmoI CTYRAG 2 cut(s) 393, 932
SpeI ACTAGT 1 cut(s) 287
SphI GCATGC 1 cut(s) 203
Sse9I AATT 2 cut(s) 655, 866
SsiI CCGC 2 cut(s) 207, 222
SspMI CTAG 1 cut(s) 288
StyD4I CCNGG 4 cut(s) 349, 456, 457, 721
TaaI ACNGT 1 cut(s) 150
TaiI ACGT 2 cut(s) 506, 548
TaqI TCGA 2 cut(s) 79, 243
TasI AATT 2 cut(s) 655, 866
TatI WGTACW 3 cut(s) 389, 425, 849
TauI GCSGC 1 cut(s) 224
TfiI GAWTC 2 cut(s) 179, 248
Tru1I TTAA 2 cut(s) 234, 380
Tru9I TTAA 2 cut(s) 234, 380
TscAI CASTG 1 cut(s) 216
TseFI GTSAC 1 cut(s) 290
TseI GCWGC 6 cut(s) 66, 215, 218, 680, 713, 996
Tsp45I GTSAC 1 cut(s) 290
TspDTI ATGAA 4 cut(s) 297, 590, 686, 708
TspMI CCCGGG 1 cut(s) 457
TspRI CASTG 1 cut(s) 216
Van91I CCANNNNNTGG 1 cut(s) 350
XapI RAATTY 1 cut(s) 866
XceI RCATGY 2 cut(s) 203, 993
XmaI CCCGGG 1 cut(s) 457
XmnI GAANNNNTTC 2 cut(s) 137, 358
XspI CTAG 1 cut(s) 288
ZrmI AGTACT 2 cut(s) 391, 427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.