MD16G1063900.v1.1

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0004384
Physical Location & Seq
Forward (+)
4523352 .. 4525038
1687 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1063900.v1.1.491

Sequence Viewer

Length: 870 bp
ATGAGTCAAGACTACGATGCTAACAGAGCAATGGAGCATGCAACTGCGGTGGCAGCTGCTGCATTTGCCATTAAATCAATTGAAGATTCGGCCATCTCTGACAAGGAAATGGCGGGCAATGAGCGTAAACCAAATTTGGTGAGGATCACGAGCGGAAAGGAAGAAACGGCAATTTCAAAGCCGGAACCTGGAATATTTTCCAAAATATTCTCAGGTTCGAGGAAAAGTACTCCAGCACAAGAAGATCCAGATGGTAAGGTGCCAATAAGCATTGCCACAACCGGGAAGAGCCCAGAAAAGGCTGTCCTTCCTGACAGTATAAAACGTCAAACTGCACCACCGCCGCCACCACCACCACCACCCCCCCTTCGACCCCCATCTATCAAGAGAACTCCAACTTTTGATGATAAACGGTCGAGCAGCGCTGGCGGTGTAAAACCTGAAACTGCAGCAGCAAAACCCAATTTGTCTGCCACTACGAAACCCGAAAGTCCTTGGGATGAAACCAAGAAGCCGACTTCAACAGGACCTGGAACAAGGAAAACACAAGCAGATATTTGGGAAGAAACCAAGATTGCTAGACTCAAAGCAAGGTATGAGAAGCAAAAGGCCACAATACTTGCATGGGAGAACAACAAGAAGACGAAATGCAGAAAACGTCTCGATAAAATAAAGCAAGGTGAAGTAGCGGAAAAAAGAGAAAAAGCACTACGAAAGTTCAGCGCAGAGATGGAATATATCAAAGAGATTGCAGACGGAGCTAGGGCACAGGCAGCAGAGAGGCACAGAAATGGTGTCTTGAAGGTGAAACAAAAGGCAAATGAAATGAGAAGAACAGGGAAAGCTCCTACAACATGCTTCTGCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

290

Amino Acids

31.7

Weight (kDa)

9.84

Isoelectric Point (pI)

46.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 180 - 284 4.3e-23 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 259
AccBSI CCGCTC 1 cut(s) 153
AciI CCGC 7 cut(s) 47, 113, 153, 341, 344, 429, 689
AclWI GGATC 2 cut(s) 152, 239
AcoI YGGCCR 1 cut(s) 90
AcsI RAATTY 1 cut(s) 133
AfaI GTAC 1 cut(s) 229
AfeI AGCGCT 1 cut(s) 424
AfiI CCNNNNNNNGG 3 cut(s) 188, 282, 298
AgsI TTSAA 4 cut(s) 83, 177, 522, 802
AjnI CCWGG 2 cut(s) 187, 529
AluBI AGCT 3 cut(s) 56, 761, 845
AluI AGCT 3 cut(s) 56, 761, 845
Alw26I GTCTC 1 cut(s) 665
AlwI GGATC 2 cut(s) 152, 239
AlwNI CAGNNNCTG 2 cut(s) 59, 530
Aor51HI AGCGCT 1 cut(s) 424
AoxI GGCC 2 cut(s) 90, 609
ApeKI GCWGC 7 cut(s) 53, 56, 59, 420, 449, 452, 773
ApoI RAATTY 1 cut(s) 133
Asp700I GAANNNNTTC 1 cut(s) 196
AspLEI GCGC 2 cut(s) 425, 725
AspS9I GGNCC 1 cut(s) 527
AsuC2I CCSGG 1 cut(s) 283
AsuHPI GGTGA 3 cut(s) 151, 692, 817
AvaII GGWCC 1 cut(s) 527
BaeGI GKGCMC 1 cut(s) 769
BanI GGYRCC 1 cut(s) 259
BanII GRGCYC 1 cut(s) 293
BauI CACGAG 1 cut(s) 148
BbsI GAAGAC 1 cut(s) 647
BbvI GCAGC 7 cut(s) 43, 46, 65, 432, 461, 464, 785
BccI CCATC 4 cut(s) 101, 245, 385, 724
BceAI ACGGC 1 cut(s) 183
BciT130I CCWGG 2 cut(s) 189, 531
BcnI CCSGG 1 cut(s) 283
BcoDI GTCTC 1 cut(s) 665
BfaI CTAG 2 cut(s) 579, 762
BfmI CTRYAG 1 cut(s) 447
BfoI RGCGCY 1 cut(s) 426
BisI GCNGC 8 cut(s) 54, 57, 60, 344, 421, 450, 453, 774
BlsI GCNGC 8 cut(s) 55, 58, 61, 345, 422, 451, 454, 775
BmcAI AGTACT 1 cut(s) 229
Bme1390I CCNGG 3 cut(s) 189, 283, 531
Bme18I GGWCC 1 cut(s) 527
BmgT120I GGNCC 1 cut(s) 527
BmiI GGNNCC 2 cut(s) 186, 261
BmrFI CCNGG 3 cut(s) 189, 283, 531
BmsI GCATC 1 cut(s) 7
BpiI GAAGAC 1 cut(s) 647
BpmI CTGGAG 1 cut(s) 216
BpuMI CCSGG 1 cut(s) 283
BsaJI CCNNGG 1 cut(s) 494
Bsc4I CCNNNNNNNGG 3 cut(s) 188, 282, 298
Bse3DI GCAATG 3 cut(s) 36, 124, 270
BseBI CCWGG 2 cut(s) 189, 531
BseDI CCNNGG 1 cut(s) 494
BseGI GGATG 1 cut(s) 505
BseLI CCNNNNNNNGG 3 cut(s) 188, 282, 298
BseMI GCAATG 3 cut(s) 36, 124, 270
BseMII CTCAG 1 cut(s) 225
BseSI GKGCMC 1 cut(s) 769
BseXI GCAGC 7 cut(s) 43, 46, 65, 432, 461, 464, 785
BsgI GTGCAG 1 cut(s) 318
Bsh1285I CGRYCG 1 cut(s) 416
BshFI GGCC 2 cut(s) 92, 611
BshNI GGYRCC 1 cut(s) 259
BsiEI CGRYCG 1 cut(s) 416
BsiSI CCGG 2 cut(s) 182, 282
BslI CCNNNNNNNGG 3 cut(s) 188, 282, 298
BsmAI GTCTC 1 cut(s) 665
BsmBI CGTCTC 1 cut(s) 665
BsnI GGCC 2 cut(s) 92, 611
Bsp1286I GDGCHC 2 cut(s) 293, 769
Bsp143I GATC 2 cut(s) 144, 244
BspACI CCGC 7 cut(s) 47, 113, 153, 341, 344, 429, 689
BspANI GGCC 2 cut(s) 92, 611
BspCNI CTCAG 1 cut(s) 224
BspLI GGNNCC 2 cut(s) 186, 261
BspMAI CTGCAG 1 cut(s) 451
BspPI GGATC 2 cut(s) 152, 239
BspQI GCTCTTC 1 cut(s) 281
BspT107I GGYRCC 1 cut(s) 259
BsrBI CCGCTC 1 cut(s) 153
BsrDI GCAATG 3 cut(s) 36, 124, 270
BssECI CCNNGG 1 cut(s) 494
BssMI GATC 2 cut(s) 144, 244
BssSI CACGAG 1 cut(s) 148
BssT1I CCWWGG 1 cut(s) 494
Bst2BI CACGAG 1 cut(s) 148
Bst2UI CCWGG 2 cut(s) 189, 531
Bst4CI ACNGT 2 cut(s) 317, 414
Bst6I CTCTTC 1 cut(s) 281
BstAPI GCANNNNNTGC 1 cut(s) 59
BstC8I GCNNGC 3 cut(s) 39, 115, 427
BstDEI CTNAG 1 cut(s) 211
BstF5I GGATG 1 cut(s) 505
BstH2I RGCGCY 1 cut(s) 426
BstHHI GCGC 2 cut(s) 425, 725
BstKTI GATC 2 cut(s) 147, 247
BstMAI GTCTC 1 cut(s) 665
BstMBI GATC 2 cut(s) 144, 244
BstMCI CGRYCG 1 cut(s) 416
BstMWI GCNNNNNNNGC 7 cut(s) 26, 53, 59, 65, 426, 758, 773
BstNI CCWGG 2 cut(s) 189, 531
BstNSI RCATGY 2 cut(s) 41, 858
BstSCI CCNGG 3 cut(s) 187, 281, 529
BstSFI CTRYAG 1 cut(s) 447
BstSLI GKGCMC 1 cut(s) 769
BstV1I GCAGC 7 cut(s) 43, 46, 65, 432, 461, 464, 785
BstV2I GAAGAC 1 cut(s) 647
BstX2I RGATCY 1 cut(s) 244
BstYI RGATCY 1 cut(s) 244
BsuRI GGCC 2 cut(s) 92, 611
BtsCI GGATG 1 cut(s) 505
Cac8I GCNNGC 3 cut(s) 39, 115, 427
CaiI CAGNNNCTG 2 cut(s) 59, 530
CfoI GCGC 2 cut(s) 425, 725
Cfr13I GGNCC 1 cut(s) 527
Csp6I GTAC 1 cut(s) 228
CspCI CAANNNNNGTGG 4 cut(s) 30, 65, 601, 636
CviAII CATG 3 cut(s) 38, 624, 855
CviJI RGCY 9 cut(s) 56, 92, 181, 291, 302, 514, 611, 761, 845
CviKI_1 RGCY 9 cut(s) 56, 92, 181, 291, 302, 514, 611, 761, 845
CviQI GTAC 1 cut(s) 228
DdeI CTNAG 1 cut(s) 211
DpnI GATC 2 cut(s) 146, 246
DpnII GATC 2 cut(s) 144, 244
EaeI YGGCCR 1 cut(s) 90
Eam1104I CTCTTC 1 cut(s) 281
EarI CTCTTC 1 cut(s) 281
Eco130I CCWWGG 1 cut(s) 494
Eco24I GRGCYC 1 cut(s) 293
Eco47I GGWCC 1 cut(s) 527
Eco47III AGCGCT 1 cut(s) 424
EcoO109I RGGNCCY 1 cut(s) 527
EcoRII CCWGG 2 cut(s) 187, 529
EcoT14I CCWWGG 1 cut(s) 494
EcoT38I GRGCYC 1 cut(s) 293
ErhI CCWWGG 1 cut(s) 494
Esp3I CGTCTC 1 cut(s) 665
FaeI CATG 3 cut(s) 41, 627, 858
FaiI YATR 6 cut(s) 39, 320, 597, 625, 738, 856
FatI CATG 3 cut(s) 37, 623, 854
FauI CCCGC 1 cut(s) 106
Fnu4HI GCNGC 8 cut(s) 54, 57, 60, 344, 421, 450, 453, 774
FokI GGATG 1 cut(s) 512
FriOI GRGCYC 1 cut(s) 293
Fsp4HI GCNGC 8 cut(s) 54, 57, 60, 344, 421, 450, 453, 774
FspBI CTAG 2 cut(s) 579, 762
GlaI GCGC 2 cut(s) 424, 724
GluI GCNGC 8 cut(s) 54, 57, 60, 344, 421, 450, 453, 774
GsuI CTGGAG 1 cut(s) 216
HaeII RGCGCY 1 cut(s) 426
HaeIII GGCC 2 cut(s) 92, 611
HapII CCGG 2 cut(s) 182, 282
HhaI GCGC 2 cut(s) 425, 725
Hin1II CATG 3 cut(s) 41, 627, 858
Hin6I GCGC 2 cut(s) 423, 723
HinP1I GCGC 2 cut(s) 423, 723
HinfI GANTC 3 cut(s) 4, 86, 582
HpaII CCGG 2 cut(s) 182, 282
HphI GGTGA 3 cut(s) 151, 692, 817
Hpy166II GTNNAC 1 cut(s) 128
Hpy188I TCNGA 1 cut(s) 100
Hpy188III TCNNGA 7 cut(s) 8, 148, 248, 311, 385, 662, 799
Hpy8I GTNNAC 1 cut(s) 128
HpyAV CCTTC 3 cut(s) 317, 377, 796
HpyCH4III ACNGT 2 cut(s) 317, 414
HpyCH4IV ACGT 2 cut(s) 325, 658
HpyCH4V TGCA 7 cut(s) 41, 62, 335, 449, 623, 651, 752
HpyF10VI GCNNNNNNNGC 7 cut(s) 26, 53, 59, 65, 426, 758, 773
HpyF3I CTNAG 1 cut(s) 211
HpySE526I ACGT 2 cut(s) 325, 658
Hsp92II CATG 3 cut(s) 41, 627, 858
HspAI GCGC 2 cut(s) 423, 723
Kzo9I GATC 2 cut(s) 144, 244
LguI GCTCTTC 1 cut(s) 281
LmnI GCTCC 3 cut(s) 34, 758, 850
Lsp1109I GCAGC 7 cut(s) 43, 46, 65, 432, 461, 464, 785
LweI GCATC 1 cut(s) 7
MaeI CTAG 2 cut(s) 579, 762
MaeII ACGT 2 cut(s) 325, 658
MalI GATC 2 cut(s) 146, 246
MbiI CCGCTC 1 cut(s) 153
MboI GATC 2 cut(s) 144, 244
MboII GAAGA 7 cut(s) 95, 173, 254, 298, 575, 652, 843
MfeI CAATTG 1 cut(s) 78
MflI RGATCY 1 cut(s) 244
MhlI GDGCHC 2 cut(s) 293, 769
MluCI AATT 4 cut(s) 78, 133, 171, 463
MlyI GAGTC 2 cut(s) 13, 576
MmeI TCCRAC 1 cut(s) 419
MnlI CCTC 3 cut(s) 135, 213, 774
MroXI GAANNNNTTC 1 cut(s) 196
MseI TTAA 1 cut(s) 72
MslI CAYNNNNRTG 1 cut(s) 789
MspA1I CMGCKG 1 cut(s) 56
MspI CCGG 2 cut(s) 182, 282
MspR9I CCNGG 3 cut(s) 189, 283, 531
MunI CAATTG 1 cut(s) 78
MvaI CCWGG 2 cut(s) 189, 531
MwoI GCNNNNNNNGC 7 cut(s) 26, 53, 59, 65, 426, 758, 773
NciI CCSGG 1 cut(s) 283
NdeII GATC 2 cut(s) 144, 244
NlaIII CATG 3 cut(s) 41, 627, 858
NlaIV GGNNCC 2 cut(s) 186, 261
NspI RCATGY 2 cut(s) 41, 858
PaeI GCATGC 1 cut(s) 41
PciSI GCTCTTC 1 cut(s) 281
PdmI GAANNNNTTC 1 cut(s) 196
PfeI GAWTC 1 cut(s) 86
PkrI GCNGC 8 cut(s) 55, 58, 61, 345, 422, 451, 454, 775
PleI GAGTC 2 cut(s) 12, 576
PpsI GAGTC 2 cut(s) 12, 576
PpuMI RGGWCCY 1 cut(s) 527
Psp5II RGGWCCY 1 cut(s) 527
Psp6I CCWGG 2 cut(s) 187, 529
PspGI CCWGG 2 cut(s) 187, 529
PspN4I GGNNCC 2 cut(s) 186, 261
PspPI GGNCC 1 cut(s) 527
PspPPI RGGWCCY 1 cut(s) 527
PstI CTGCAG 1 cut(s) 451
PstNI CAGNNNCTG 2 cut(s) 59, 530
PsuI RGATCY 1 cut(s) 244
PvuII CAGCTG 1 cut(s) 56
RsaI GTAC 1 cut(s) 229
RsaNI GTAC 1 cut(s) 228
RseI CAYNNNNRTG 1 cut(s) 789
SapI GCTCTTC 1 cut(s) 281
SaqAI TTAA 1 cut(s) 72
SatI GCNGC 8 cut(s) 54, 57, 60, 344, 421, 450, 453, 774
Sau3AI GATC 2 cut(s) 144, 244
Sau96I GGNCC 1 cut(s) 527
ScaI AGTACT 1 cut(s) 229
SchI GAGTC 2 cut(s) 13, 576
ScrFI CCNGG 3 cut(s) 189, 283, 531
SduI GDGCHC 2 cut(s) 293, 769
SfaNI GCATC 1 cut(s) 7
SfcI CTRYAG 1 cut(s) 447
SinI GGWCC 1 cut(s) 527
SmiMI CAYNNNNRTG 1 cut(s) 789
SphI GCATGC 1 cut(s) 41
Sse9I AATT 4 cut(s) 78, 133, 171, 463
SsiI CCGC 7 cut(s) 47, 113, 153, 341, 344, 429, 689
SspI AATATT 2 cut(s) 195, 207
SspMI CTAG 2 cut(s) 579, 762
StyD4I CCNGG 3 cut(s) 187, 281, 529
StyI CCWWGG 1 cut(s) 494
TaaI ACNGT 2 cut(s) 317, 414
TaiI ACGT 2 cut(s) 328, 661
TaqI TCGA 4 cut(s) 218, 370, 416, 663
TasI AATT 4 cut(s) 78, 133, 171, 463
TatI WGTACW 1 cut(s) 227
TauI GCSGC 1 cut(s) 346
TfiI GAWTC 1 cut(s) 86
Tru1I TTAA 1 cut(s) 72
Tru9I TTAA 1 cut(s) 72
TseI GCWGC 7 cut(s) 53, 56, 59, 420, 449, 452, 773
TspDTI ATGAA 2 cut(s) 516, 837
TspGWI ACGGA 1 cut(s) 771
VpaK11BI GGWCC 1 cut(s) 527
XapI RAATTY 1 cut(s) 133
XceI RCATGY 2 cut(s) 41, 858
XmnI GAANNNNTTC 1 cut(s) 196
XspI CTAG 2 cut(s) 579, 762
ZrmI AGTACT 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.