RLG00000006332

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0004384
Physical Location & Seq
Reverse (-)
6309604 .. 6311390
1787 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006332

Sequence Viewer

Length: 1026 bp
ATGGAGCCTAAGCAAATGAGGGTGAGATTTTCTGGTGTAAATCAGGTGAAAACAGAAGAGTCCGGCAGCGTCATCGATCGAAGAATACCACCGCAGAAAACTCAATCTTTTAAAGAGAAAAAGAAGACGCAGAACTGGTTCCAAAGACGGTTTTCTGGGCAAATGAGTCAAGATTATGATTCTATCGTTGAAATAGAGCATGCAACCGCAGTGGCAGCTGCTGCATTTGCAGTTAAATCAATCGAAGAATCGGCAGTCTCTGATAAGAAAAGGACAGGCGATGAAACAAGTGACTCTTTGGTGAAGATCAAGAGCAAAAAGGAAGAAACAACAATTTCAAAGCCAGAACCTGGAAGACTTTCCAAACTATTCTCAGGTGCAGGTTTAACAAAAAGTACTCGAGAAGATCCAGATAGTGAGGGGCCAATAAGTACTTCTCCTACTTCCCCAAACGACAAGATCCCGCGAAAGACCATCCTTCCTGCTCCCTCTATTAAACAAACTCCAACGTCTGATGCCATCCATCCTGCCCCATCAATGAAAAAAACTCCAACTTTTGCTGATAAGCCATTGAACAGCACAAACAGTATAAAACCTGAAACTTCAGCACCAAAACTCGATTTGCCCACCACTACGAAACCTGCTGCACCTGTAAATGAAACCAAATGGCAGAGTGCAGCAAAACCTGGAGTGGTAAAGACAAAAGCAGATAAATGGGAGGAGGCTGAGATGGCTAAACTCAAAGAAAGGTATGAGCAGCAAAACACTACAATACTTTCCTGGGAGAACAAGAAGAAGAAGAAAAGCAAACTTCGGCTGGAGAAAAGAGAGAGTGAAACAGATACAAGAAGATTAAAAGCGCTACGGAAGTACAACAATGAGATGGAATATATCAAACAGATTGCAGAAGGAGCAAGGGCACAGGCAGAGGAGAAGCGTAGGAATAAAGAACTCAAGGTGAAAGAAAAGGCAAATACACTAAGAAGAACAGGGAAAGAAGCTCCTACAAAATGTTGCTGCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

342

Amino Acids

38.38

Weight (kDa)

9.78

Isoelectric Point (pI)

49.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 232 - 332 6.2e-26 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 371, 649
AccB7I CCANNNNNTGG 1 cut(s) 350
AccII CGCG 1 cut(s) 466
AciI CCGC 3 cut(s) 92, 207, 464
AclWI GGATC 2 cut(s) 401, 454
AcuI CTGAAG 1 cut(s) 588
AfaI GTAC 3 cut(s) 397, 433, 872
AfeI AGCGCT 1 cut(s) 861
AfiI CCNNNNNNNGG 1 cut(s) 350
AgsI TTSAA 3 cut(s) 191, 339, 574
AjnI CCWGG 3 cut(s) 349, 685, 779
AjuI GAANNNNNNNTTGG 2 cut(s) 418, 450
AluBI AGCT 2 cut(s) 218, 1001
AluI AGCT 2 cut(s) 218, 1001
Alw26I GTCTC 1 cut(s) 262
AlwI GGATC 2 cut(s) 401, 454
AlwNI CAGNNNCTG 3 cut(s) 221, 260, 350
Ama87I CYCGRG 1 cut(s) 399
Aor51HI AGCGCT 1 cut(s) 861
AoxI GGCC 1 cut(s) 422
ApeKI GCWGC 8 cut(s) 66, 215, 218, 221, 644, 677, 757, 1017
Asp700I GAANNNNTTC 2 cut(s) 137, 358
AspLEI GCGC 1 cut(s) 862
AspS9I GGNCC 1 cut(s) 422
AsuHPI GGTGA 4 cut(s) 34, 58, 313, 970
AvaI CYCGRG 1 cut(s) 399
BaeGI GKGCMC 1 cut(s) 922
BbsI GAAGAC 2 cut(s) 131, 361
BbvI GCAGC 8 cut(s) 78, 205, 208, 227, 631, 689, 769, 1004
BccI CCATC 6 cut(s) 482, 527, 531, 541, 724, 877
BcgI CGANNNNNNTGC 2 cut(s) 55, 89
BciT130I CCWGG 3 cut(s) 351, 687, 781
BcoDI GTCTC 1 cut(s) 262
BfoI RGCGCY 1 cut(s) 863
BfuAI ACCTGC 2 cut(s) 371, 649
BisI GCNGC 8 cut(s) 67, 216, 219, 222, 645, 678, 758, 1018
BlsI GCNGC 8 cut(s) 68, 217, 220, 223, 646, 679, 759, 1019
BmcAI AGTACT 2 cut(s) 397, 433
Bme1390I CCNGG 3 cut(s) 351, 687, 781
BmeT110I CYCGRG 1 cut(s) 399
BmgT120I GGNCC 1 cut(s) 422
BmiI GGNNCC 3 cut(s) 6, 140, 423
BmrFI CCNGG 3 cut(s) 351, 687, 781
BmsI GCATC 1 cut(s) 505
BpiI GAAGAC 2 cut(s) 131, 361
BpmI CTGGAG 2 cut(s) 708, 839
Bpu10I CCTNAGC 1 cut(s) 9
BpuEI CTTGAG 1 cut(s) 938
Bsa29I ATCGAT 1 cut(s) 75
BsaJI CCNNGG 1 cut(s) 780
Bsc4I CCNNNNNNNGG 1 cut(s) 350
Bse1I ACTGG 1 cut(s) 140
BseBI CCWGG 3 cut(s) 351, 687, 781
BseCI ATCGAT 1 cut(s) 75
BseDI CCNNGG 1 cut(s) 780
BseGI GGATG 3 cut(s) 474, 519, 523
BseLI CCNNNNNNNGG 1 cut(s) 350
BseMII CTCAG 2 cut(s) 387, 717
BseNI ACTGG 1 cut(s) 140
BseRI GAGGAG 2 cut(s) 734, 944
BseSI GKGCMC 1 cut(s) 922
BseXI GCAGC 8 cut(s) 78, 205, 208, 227, 631, 689, 769, 1004
BsgI GTGCAG 3 cut(s) 399, 630, 696
Bsh1236I CGCG 1 cut(s) 466
Bsh1285I CGRYCG 1 cut(s) 79
BshFI GGCC 1 cut(s) 424
BshVI ATCGAT 1 cut(s) 75
BsiEI CGRYCG 1 cut(s) 79
BsiHKCI CYCGRG 1 cut(s) 399
BsiSI CCGG 1 cut(s) 63
BslI CCNNNNNNNGG 1 cut(s) 350
BsmAI GTCTC 1 cut(s) 262
BsnI GGCC 1 cut(s) 424
BsoBI CYCGRG 1 cut(s) 399
Bsp1286I GDGCHC 1 cut(s) 922
Bsp143I GATC 4 cut(s) 76, 306, 406, 459
BspACI CCGC 3 cut(s) 92, 207, 464
BspANI GGCC 1 cut(s) 424
BspCNI CTCAG 2 cut(s) 386, 718
BspDI ATCGAT 1 cut(s) 75
BspFNI CGCG 1 cut(s) 466
BspLI GGNNCC 3 cut(s) 6, 140, 423
BspMI ACCTGC 2 cut(s) 371, 649
BspPI GGATC 2 cut(s) 401, 454
BsrI ACTGG 1 cut(s) 140
BssECI CCNNGG 1 cut(s) 780
BssMI GATC 4 cut(s) 76, 306, 406, 459
Bst2UI CCWGG 3 cut(s) 351, 687, 781
Bst4CI ACNGT 2 cut(s) 150, 587
Bst6I CTCTTC 1 cut(s) 51
BstAPI GCANNNNNTGC 1 cut(s) 221
BstC8I GCNNGC 1 cut(s) 201
BstDEI CTNAG 4 cut(s) 9, 373, 726, 980
BstF5I GGATG 3 cut(s) 474, 519, 523
BstFNI CGCG 1 cut(s) 466
BstH2I RGCGCY 1 cut(s) 863
BstHHI GCGC 1 cut(s) 862
BstKTI GATC 4 cut(s) 79, 309, 409, 462
BstMAI GTCTC 1 cut(s) 262
BstMBI GATC 4 cut(s) 76, 306, 406, 459
BstMCI CGRYCG 1 cut(s) 79
BstMWI GCNNNNNNNGC 5 cut(s) 215, 221, 227, 731, 911
BstNI CCWGG 3 cut(s) 351, 687, 781
BstNSI RCATGY 1 cut(s) 203
BstSCI CCNGG 3 cut(s) 349, 685, 779
BstSLI GKGCMC 1 cut(s) 922
BstUI CGCG 1 cut(s) 466
BstV1I GCAGC 8 cut(s) 78, 205, 208, 227, 631, 689, 769, 1004
BstV2I GAAGAC 2 cut(s) 131, 361
BstX2I RGATCY 2 cut(s) 406, 459
BstYI RGATCY 2 cut(s) 406, 459
Bsu15I ATCGAT 1 cut(s) 75
BsuRI GGCC 1 cut(s) 424
BsuTUI ATCGAT 1 cut(s) 75
BtgZI GCGATG 1 cut(s) 294
BtsCI GGATG 3 cut(s) 474, 519, 523
BtsI GCAGTG 1 cut(s) 216
BtsIMutI CAGTG 1 cut(s) 216
BveI ACCTGC 2 cut(s) 371, 649
Cac8I GCNNGC 1 cut(s) 201
CaiI CAGNNNCTG 3 cut(s) 221, 260, 350
CfoI GCGC 1 cut(s) 862
Cfr13I GGNCC 1 cut(s) 422
ClaI ATCGAT 1 cut(s) 75
CseI GACGC 2 cut(s) 58, 136
Csp6I GTAC 3 cut(s) 396, 432, 871
CspCI CAANNNNNGTGG 2 cut(s) 192, 227
CviAII CATG 1 cut(s) 200
CviJI RGCY 9 cut(s) 7, 218, 343, 424, 568, 725, 734, 817, 1001
CviKI_1 RGCY 9 cut(s) 7, 218, 343, 424, 568, 725, 734, 817, 1001
CviQI GTAC 3 cut(s) 396, 432, 871
DdeI CTNAG 4 cut(s) 9, 373, 726, 980
DpnI GATC 4 cut(s) 78, 308, 408, 461
DpnII GATC 4 cut(s) 76, 306, 406, 459
DraI TTTAAA 1 cut(s) 112
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Eco47III AGCGCT 1 cut(s) 861
Eco57I CTGAAG 1 cut(s) 588
Eco88I CYCGRG 1 cut(s) 399
EcoRII CCWGG 3 cut(s) 349, 685, 779
FaeI CATG 1 cut(s) 203
FaiI YATR 5 cut(s) 177, 201, 590, 753, 891
FalI AAGNNNNNCTT 2 cut(s) 280, 312
FatI CATG 1 cut(s) 199
FauI CCCGC 1 cut(s) 471
Fnu4HI GCNGC 8 cut(s) 67, 216, 219, 222, 645, 678, 758, 1018
FokI GGATG 3 cut(s) 461, 506, 510
Fsp4HI GCNGC 8 cut(s) 67, 216, 219, 222, 645, 678, 758, 1018
GlaI GCGC 1 cut(s) 861
GluI GCNGC 8 cut(s) 67, 216, 219, 222, 645, 678, 758, 1018
GsuI CTGGAG 2 cut(s) 708, 839
HaeII RGCGCY 1 cut(s) 863
HaeIII GGCC 1 cut(s) 424
HapII CCGG 1 cut(s) 63
HgaI GACGC 2 cut(s) 58, 136
HhaI GCGC 1 cut(s) 862
Hin1II CATG 1 cut(s) 203
Hin6I GCGC 1 cut(s) 860
HinP1I GCGC 1 cut(s) 860
HinfI GANTC 5 cut(s) 59, 166, 179, 248, 293
HpaII CCGG 1 cut(s) 63
HphI GGTGA 4 cut(s) 34, 58, 313, 970
Hpy188I TCNGA 2 cut(s) 262, 514
Hpy188III TCNNGA 4 cut(s) 170, 310, 401, 410
HpyAV CCTTC 2 cut(s) 488, 902
HpyCH4III ACNGT 2 cut(s) 150, 587
HpyCH4IV ACGT 1 cut(s) 509
HpyCH4V TGCA 7 cut(s) 203, 224, 230, 380, 647, 677, 905
HpyF10VI GCNNNNNNNGC 5 cut(s) 215, 221, 227, 731, 911
HpyF3I CTNAG 4 cut(s) 9, 373, 726, 980
HpySE526I ACGT 1 cut(s) 509
Hsp92II CATG 1 cut(s) 203
HspAI GCGC 1 cut(s) 860
Kzo9I GATC 4 cut(s) 76, 306, 406, 459
LmnI GCTCC 4 cut(s) 4, 490, 911, 1006
Lsp1109I GCAGC 8 cut(s) 78, 205, 208, 227, 631, 689, 769, 1004
LweI GCATC 1 cut(s) 505
MaeII ACGT 1 cut(s) 509
MaeIII GTNAC 1 cut(s) 290
MalI GATC 4 cut(s) 78, 308, 408, 461
MboI GATC 4 cut(s) 76, 306, 406, 459
MflI RGATCY 2 cut(s) 406, 459
MhlI GDGCHC 1 cut(s) 922
MluCI AATT 1 cut(s) 333
MlyI GAGTC 3 cut(s) 68, 175, 287
MmeI TCCRAC 2 cut(s) 530, 575
MnlI CCTC 6 cut(s) 12, 412, 499, 712, 715, 922
MroXI GAANNNNTTC 2 cut(s) 137, 358
MseI TTAA 5 cut(s) 111, 234, 386, 495, 854
MspA1I CMGCKG 1 cut(s) 218
MspI CCGG 1 cut(s) 63
MspR9I CCNGG 3 cut(s) 351, 687, 781
MvaI CCWGG 3 cut(s) 351, 687, 781
MvnI CGCG 1 cut(s) 466
MwoI GCNNNNNNNGC 5 cut(s) 215, 221, 227, 731, 911
NdeII GATC 4 cut(s) 76, 306, 406, 459
NlaIII CATG 1 cut(s) 203
NlaIV GGNNCC 3 cut(s) 6, 140, 423
NmuCI GTSAC 1 cut(s) 290
NspI RCATGY 1 cut(s) 203
PaeI GCATGC 1 cut(s) 203
PaeR7I CTCGAG 1 cut(s) 399
PdmI GAANNNNTTC 2 cut(s) 137, 358
PfeI GAWTC 2 cut(s) 179, 248
PflMI CCANNNNNTGG 1 cut(s) 350
PkrI GCNGC 8 cut(s) 68, 217, 220, 223, 646, 679, 759, 1019
Ple19I CGATCG 1 cut(s) 79
PleI GAGTC 3 cut(s) 67, 174, 287
PpsI GAGTC 3 cut(s) 67, 174, 287
Psp6I CCWGG 3 cut(s) 349, 685, 779
PspGI CCWGG 3 cut(s) 349, 685, 779
PspN4I GGNNCC 3 cut(s) 6, 140, 423
PspPI GGNCC 1 cut(s) 422
PstNI CAGNNNCTG 3 cut(s) 221, 260, 350
PsuI RGATCY 2 cut(s) 406, 459
PvuI CGATCG 1 cut(s) 79
PvuII CAGCTG 1 cut(s) 218
RsaI GTAC 3 cut(s) 397, 433, 872
RsaNI GTAC 3 cut(s) 396, 432, 871
SaqAI TTAA 5 cut(s) 111, 234, 386, 495, 854
SatI GCNGC 8 cut(s) 67, 216, 219, 222, 645, 678, 758, 1018
Sau3AI GATC 4 cut(s) 76, 306, 406, 459
Sau96I GGNCC 1 cut(s) 422
ScaI AGTACT 2 cut(s) 397, 433
SchI GAGTC 3 cut(s) 68, 175, 287
ScrFI CCNGG 3 cut(s) 351, 687, 781
SduI GDGCHC 1 cut(s) 922
SfaNI GCATC 1 cut(s) 505
Sfr274I CTCGAG 1 cut(s) 399
SlaI CTCGAG 1 cut(s) 399
SmlI CTYRAG 2 cut(s) 399, 953
SmoI CTYRAG 2 cut(s) 399, 953
SphI GCATGC 1 cut(s) 203
Sse9I AATT 1 cut(s) 333
SsiI CCGC 3 cut(s) 92, 207, 464
StyD4I CCNGG 3 cut(s) 349, 685, 779
TaaI ACNGT 2 cut(s) 150, 587
TaiI ACGT 1 cut(s) 512
TaqI TCGA 5 cut(s) 75, 79, 243, 400, 618
TasI AATT 1 cut(s) 333
TatI WGTACW 3 cut(s) 395, 431, 870
TfiI GAWTC 2 cut(s) 179, 248
Tru1I TTAA 5 cut(s) 111, 234, 386, 495, 854
Tru9I TTAA 5 cut(s) 111, 234, 386, 495, 854
TscAI CASTG 1 cut(s) 216
TseFI GTSAC 1 cut(s) 290
TseI GCWGC 8 cut(s) 66, 215, 218, 221, 644, 677, 757, 1017
Tsp45I GTSAC 1 cut(s) 290
TspDTI ATGAA 3 cut(s) 297, 554, 672
TspGWI ACGGA 1 cut(s) 880
TspRI CASTG 1 cut(s) 216
Van91I CCANNNNNTGG 1 cut(s) 350
XceI RCATGY 1 cut(s) 203
XhoI CTCGAG 1 cut(s) 399
XmnI GAANNNNTTC 2 cut(s) 137, 358
ZrmI AGTACT 2 cut(s) 397, 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.