Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004384

Physical Location & Seq

Genomic Coordinates Forward (+)

61342240 .. 61343890

Gene Structure 1651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40686

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGTATATGACTAAGCAAAGCATTATTGGTAGGGTGAGATTTTCTGGTGTAAATCAGGTGAAAACAGAAGAGTCCGGCAGCGTCATTGATCGAAGAATACCACCACAGAAAACTCAATCTTTCAAAGAGAAAAAGAAGACGCAGAACTGGTTCCAGAGACGGTTTTCTGGGCAAATGAGTCAAGATTATGATTCTATCGTTGAAATAGAGCATGCAACCGCAGTGGCAGCTGCCGCATTTGCAGTTAAATCAATCGAAGAATCGGCAGTCTCTGATAAGAAAAGGACAGGCGATGAAACTAGTGACTCTTTGGTGAAGATCAAGAGCAAAAAGGAAGAAACAACAATTTCAAAGCCAGAACCTGGAAGACTTTCCAAACTATTCTCAGGTGCAGGTTTAACAAAAAGTACTCAAGAAGATCCAGATAGTAAGGTGCCAATAAGTACTTCCCCTACTTTTCCAAACGACAAGATCCCGGGAAAGACCATCCTTCCTGCTCCCTCTATCAAACGAACTCCAACGTCTGATGCCATCCTTCCTGCTTCCTCTATTAAACAAACTCCAACGTCTGATGCCATCCATCCTGCCCCATCAATGAAAAAAACTCCAACTTCTGCTGATAAGCCATTGAACAGCACAAGCAGTATAAAACCCGAAACTTCAGCACCAAAACTCAATTTGCCCACCACTATGAAACCTGCTGCACCTGCAAATGAAACCAAATGGCAGAGTGCAGCAACACCTGGAGTGGTAAAGACAAAAGCAGATAAATGGGAGGAGGCTGAGATGGCTAAACTCAAAGAAAGGTATGAGCAGCAAAATGCTACAATACTTTCCTGGGAGAACAAGAAGAAGAAGAAAAGCAAACTTCGGCTGGAGAAAACAGAGAGTGAAATAGAGAGAAGAAGAGTAAAAGCGCTACAAAAGTACAACAATGAGATGGAATATATCAAACAGATTGCAGAAGGAGCAAGGGCACAGGCAGAGGAGAAGCGTAGGAATAAGGAACTCAAGGTGAAAGAAAAGGCAAATACACTAAGAAGAACAGGGGAAGAAGCTCCTACAACATGTTGCTGCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Remorin_C

Protein Analysis

360

Amino Acids

40.12

Weight (kDa)

9.71

Isoelectric Point (pI)

58.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Remorin_C	PF03763	251 - 351	5.8e-28	Remorin, C-terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13920 AT1G13920 AT1G13920 AT1G13920 AT1G13920 AT1G13920 AT1G13920 AT1G69325
fragaria_vesca	FvH4_4g30432 FvH4_4g30432 FvH4_4g30432 FvH4_4g30432
malus_domestica	MD13G1065400.v1.1 MD16G1063900.v1.1
prunus_persica	Prupe.1G282700_v2.0.a1
pyrus_communis	pycom13g05770 pycom16g05600
rosa_chinensis	RchiOBHm_Chr4g0438751
rosa_laevigata	RLG00000006332
rosa_multiflora	Rmu_co8425743.1_g000001 Rmu_sc0002505.1_g000008
rosa_roxburghii	Rroxscaffold_5G00379780
rosa_rugosa	Rorug04G0312900 Rorug04G0312900 Rorug04G0313000 Rorug04G0313000
rosa_samantha	Rh4AG363600 Rh4BG375100 Rh4CG389200 Rh4DG369400
rosa_wichuraiana	Rw0G007210 Rw0G016760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	715
Acc36I	ACCTGC	3 cut(s)	383, 706, 715
AccB1I	GGYRCC	1 cut(s)	433
AccB7I	CCANNNNNTGG	1 cut(s)	362
AciI	CCGC	2 cut(s)	219, 234
AclWI	GGATC	2 cut(s)	413, 466
AcuI	CTGAAG	1 cut(s)	645
AfaI	GTAC	3 cut(s)	409, 445, 929
AfeI	AGCGCT	1 cut(s)	918
AfiI	CCNNNNNNNGG	1 cut(s)	362
AflIII	ACRYGT	1 cut(s)	1067
AgsI	TTSAA	4 cut(s)	124, 203, 351, 631
AhlI	ACTAGT	1 cut(s)	299
AjnI	CCWGG	3 cut(s)	361, 742, 836
AjuI	GAANNNNNNNTTGG	2 cut(s)	430, 462
AluBI	AGCT	2 cut(s)	230, 1058
AluI	AGCT	2 cut(s)	230, 1058
Alw26I	GTCTC	2 cut(s)	151, 274
AlwI	GGATC	2 cut(s)	413, 466
AlwNI	CAGNNNCTG	2 cut(s)	272, 362
Ama87I	CYCGRG	1 cut(s)	475
Aor51HI	AGCGCT	1 cut(s)	918
ApeKI	GCWGC	7 cut(s)	78, 227, 230, 701, 734, 814, 1074
Asp700I	GAANNNNTTC	2 cut(s)	149, 370
AspLEI	GCGC	1 cut(s)	919
AsuC2I	CCSGG	2 cut(s)	476, 477
AsuHPI	GGTGA	4 cut(s)	46, 70, 325, 1027
AvaI	CYCGRG	1 cut(s)	475
BaeGI	GKGCMC	1 cut(s)	979
BanI	GGYRCC	1 cut(s)	433
BbsI	GAAGAC	2 cut(s)	143, 373
BbvI	GCAGC	7 cut(s)	90, 217, 239, 688, 746, 826, 1061
BccI	CCATC	7 cut(s)	494, 539, 584, 588, 598, 781, 934
BciT130I	CCWGG	3 cut(s)	363, 744, 838
BcnI	CCSGG	2 cut(s)	476, 477
BcoDI	GTCTC	2 cut(s)	151, 274
BcuI	ACTAGT	1 cut(s)	299
BfaI	CTAG	1 cut(s)	300
BfoI	RGCGCY	1 cut(s)	920
BfuAI	ACCTGC	3 cut(s)	383, 706, 715
BisI	GCNGC	8 cut(s)	79, 228, 231, 234, 702, 735, 815, 1075
BlsI	GCNGC	8 cut(s)	80, 229, 232, 235, 703, 736, 816, 1076
BmcAI	AGTACT	2 cut(s)	409, 445
Bme1390I	CCNGG	5 cut(s)	363, 476, 477, 744, 838
BmeT110I	CYCGRG	1 cut(s)	475
BmiI	GGNNCC	2 cut(s)	152, 435
BmrFI	CCNGG	5 cut(s)	363, 476, 477, 744, 838
BmsI	GCATC	2 cut(s)	517, 562
BpiI	GAAGAC	2 cut(s)	143, 373
BpmI	CTGGAG	2 cut(s)	765, 896
BpuEI	CTTGAG	2 cut(s)	396, 995
BpuMI	CCSGG	2 cut(s)	476, 477
BsaJI	CCNNGG	2 cut(s)	475, 837
Bsc4I	CCNNNNNNNGG	1 cut(s)	362
Bse1I	ACTGG	1 cut(s)	152
BseBI	CCWGG	3 cut(s)	363, 744, 838
BseDI	CCNNGG	2 cut(s)	475, 837
BseGI	GGATG	4 cut(s)	486, 531, 576, 580
BseLI	CCNNNNNNNGG	1 cut(s)	362
BseMII	CTCAG	2 cut(s)	399, 774
BseNI	ACTGG	1 cut(s)	152
BseRI	GAGGAG	2 cut(s)	791, 1001
BseSI	GKGCMC	1 cut(s)	979
BseXI	GCAGC	7 cut(s)	90, 217, 239, 688, 746, 826, 1061
BsgI	GTGCAG	3 cut(s)	411, 687, 753
BshNI	GGYRCC	1 cut(s)	433
BsiHKCI	CYCGRG	1 cut(s)	475
BsiSI	CCGG	2 cut(s)	75, 476
BslI	CCNNNNNNNGG	1 cut(s)	362
BsmAI	GTCTC	2 cut(s)	151, 274
BsmBI	CGTCTC	1 cut(s)	151
BsoBI	CYCGRG	1 cut(s)	475
Bsp1286I	GDGCHC	1 cut(s)	979
Bsp143I	GATC	4 cut(s)	88, 318, 418, 471
BspACI	CCGC	2 cut(s)	219, 234
BspCNI	CTCAG	2 cut(s)	398, 775
BspLI	GGNNCC	2 cut(s)	152, 435
BspMI	ACCTGC	3 cut(s)	383, 706, 715
BspPI	GGATC	2 cut(s)	413, 466
BspT107I	GGYRCC	1 cut(s)	433
BsrI	ACTGG	1 cut(s)	152
BssECI	CCNNGG	2 cut(s)	475, 837
BssMI	GATC	4 cut(s)	88, 318, 418, 471
Bst2UI	CCWGG	3 cut(s)	363, 744, 838
Bst4CI	ACNGT	1 cut(s)	162
Bst6I	CTCTTC	2 cut(s)	63, 901
BstC8I	GCNNGC	1 cut(s)	213
BstDEI	CTNAG	4 cut(s)	12, 385, 783, 1037
BstF5I	GGATG	4 cut(s)	486, 531, 576, 580
BstH2I	RGCGCY	1 cut(s)	920
BstHHI	GCGC	1 cut(s)	919
BstKTI	GATC	4 cut(s)	91, 321, 421, 474
BstMAI	GTCTC	2 cut(s)	151, 274
BstMBI	GATC	4 cut(s)	88, 318, 418, 471
BstMWI	GCNNNNNNNGC	6 cut(s)	227, 233, 239, 707, 788, 968
BstNI	CCWGG	3 cut(s)	363, 744, 838
BstNSI	RCATGY	2 cut(s)	215, 1071
BstSCI	CCNGG	5 cut(s)	361, 474, 475, 742, 836
BstSLI	GKGCMC	1 cut(s)	979
BstV1I	GCAGC	7 cut(s)	90, 217, 239, 688, 746, 826, 1061
BstV2I	GAAGAC	2 cut(s)	143, 373
BstX2I	RGATCY	2 cut(s)	418, 471
BstYI	RGATCY	2 cut(s)	418, 471
BtgZI	GCGATG	1 cut(s)	306
BtsCI	GGATG	4 cut(s)	486, 531, 576, 580
BtsI	GCAGTG	1 cut(s)	228
BtsIMutI	CAGTG	1 cut(s)	228
BveI	ACCTGC	3 cut(s)	383, 706, 715
Cac8I	GCNNGC	1 cut(s)	213
CaiI	CAGNNNCTG	2 cut(s)	272, 362
CfoI	GCGC	1 cut(s)	919
Cfr9I	CCCGGG	1 cut(s)	475
CseI	GACGC	2 cut(s)	70, 148
Csp6I	GTAC	3 cut(s)	408, 444, 928
CspCI	CAANNNNNGTGG	2 cut(s)	204, 239
CviAII	CATG	2 cut(s)	212, 1068
CviJI	RGCY	7 cut(s)	230, 355, 625, 782, 791, 874, 1058
CviKI_1	RGCY	7 cut(s)	230, 355, 625, 782, 791, 874, 1058
CviQI	GTAC	3 cut(s)	408, 444, 928
DdeI	CTNAG	4 cut(s)	12, 385, 783, 1037
DpnI	GATC	4 cut(s)	90, 320, 420, 473
DpnII	GATC	4 cut(s)	88, 318, 418, 471
Eam1104I	CTCTTC	2 cut(s)	63, 901
EarI	CTCTTC	2 cut(s)	63, 901
Eco47III	AGCGCT	1 cut(s)	918
Eco57I	CTGAAG	1 cut(s)	645
Eco88I	CYCGRG	1 cut(s)	475
EcoRII	CCWGG	3 cut(s)	361, 742, 836
Esp3I	CGTCTC	1 cut(s)	151
FaeI	CATG	2 cut(s)	215, 1071
FaiI	YATR	9 cut(s)	6, 8, 189, 213, 647, 692, 810, 948, 1069
FatI	CATG	2 cut(s)	211, 1067
Fnu4HI	GCNGC	8 cut(s)	79, 228, 231, 234, 702, 735, 815, 1075
FokI	GGATG	4 cut(s)	473, 518, 563, 567
Fsp4HI	GCNGC	8 cut(s)	79, 228, 231, 234, 702, 735, 815, 1075
FspBI	CTAG	1 cut(s)	300
GlaI	GCGC	1 cut(s)	918
GluI	GCNGC	8 cut(s)	79, 228, 231, 234, 702, 735, 815, 1075
GsuI	CTGGAG	2 cut(s)	765, 896
HaeII	RGCGCY	1 cut(s)	920
HapII	CCGG	2 cut(s)	75, 476
HgaI	GACGC	2 cut(s)	70, 148
HhaI	GCGC	1 cut(s)	919
Hin1II	CATG	2 cut(s)	215, 1071
Hin6I	GCGC	1 cut(s)	917
HinP1I	GCGC	1 cut(s)	917
HinfI	GANTC	5 cut(s)	71, 178, 191, 260, 305
HpaII	CCGG	2 cut(s)	75, 476
HphI	GGTGA	4 cut(s)	46, 70, 325, 1027
Hpy188I	TCNGA	3 cut(s)	274, 526, 571
Hpy188III	TCNNGA	5 cut(s)	154, 182, 322, 413, 422
HpyAV	CCTTC	3 cut(s)	500, 545, 959
HpyCH4III	ACNGT	1 cut(s)	162
HpyCH4IV	ACGT	2 cut(s)	521, 566
HpyCH4V	TGCA	7 cut(s)	215, 242, 392, 704, 710, 734, 962
HpyF10VI	GCNNNNNNNGC	6 cut(s)	227, 233, 239, 707, 788, 968
HpyF3I	CTNAG	4 cut(s)	12, 385, 783, 1037
HpySE526I	ACGT	2 cut(s)	521, 566
Hsp92II	CATG	2 cut(s)	215, 1071
HspAI	GCGC	1 cut(s)	917
Kzo9I	GATC	4 cut(s)	88, 318, 418, 471
LmnI	GCTCC	3 cut(s)	502, 968, 1063
Lsp1109I	GCAGC	7 cut(s)	90, 217, 239, 688, 746, 826, 1061
LweI	GCATC	2 cut(s)	517, 562
MaeI	CTAG	1 cut(s)	300
MaeII	ACGT	2 cut(s)	521, 566
MaeIII	GTNAC	1 cut(s)	302
MalI	GATC	4 cut(s)	90, 320, 420, 473
MboI	GATC	4 cut(s)	88, 318, 418, 471
MflI	RGATCY	2 cut(s)	418, 471
MhlI	GDGCHC	1 cut(s)	979
MluCI	AATT	2 cut(s)	345, 676
MlyI	GAGTC	3 cut(s)	80, 187, 299
MmeI	TCCRAC	3 cut(s)	542, 587, 632
MnlI	CCTC	5 cut(s)	511, 556, 769, 772, 979
MroXI	GAANNNNTTC	2 cut(s)	149, 370
MseI	TTAA	3 cut(s)	246, 398, 552
MslI	CAYNNNNRTG	1 cut(s)	689
MspA1I	CMGCKG	1 cut(s)	230
MspI	CCGG	2 cut(s)	75, 476
MspR9I	CCNGG	5 cut(s)	363, 476, 477, 744, 838
MvaI	CCWGG	3 cut(s)	363, 744, 838
MwoI	GCNNNNNNNGC	6 cut(s)	227, 233, 239, 707, 788, 968
NciI	CCSGG	2 cut(s)	476, 477
NdeII	GATC	4 cut(s)	88, 318, 418, 471
NlaIII	CATG	2 cut(s)	215, 1071
NlaIV	GGNNCC	2 cut(s)	152, 435
NmuCI	GTSAC	1 cut(s)	302
NspI	RCATGY	2 cut(s)	215, 1071
PaeI	GCATGC	1 cut(s)	215
PaqCI	CACCTGC	1 cut(s)	715
PciI	ACATGT	1 cut(s)	1067
PdmI	GAANNNNTTC	2 cut(s)	149, 370
PfeI	GAWTC	2 cut(s)	191, 260
PflMI	CCANNNNNTGG	1 cut(s)	362
PkrI	GCNGC	8 cut(s)	80, 229, 232, 235, 703, 736, 816, 1076
PleI	GAGTC	3 cut(s)	79, 186, 299
PpsI	GAGTC	3 cut(s)	79, 186, 299
PscI	ACATGT	1 cut(s)	1067
Psp6I	CCWGG	3 cut(s)	361, 742, 836
PspGI	CCWGG	3 cut(s)	361, 742, 836
PspN4I	GGNNCC	2 cut(s)	152, 435
PstNI	CAGNNNCTG	2 cut(s)	272, 362
PsuI	RGATCY	2 cut(s)	418, 471
PvuII	CAGCTG	1 cut(s)	230
RsaI	GTAC	3 cut(s)	409, 445, 929
RsaNI	GTAC	3 cut(s)	408, 444, 928
RseI	CAYNNNNRTG	1 cut(s)	689
SaqAI	TTAA	3 cut(s)	246, 398, 552
SatI	GCNGC	8 cut(s)	79, 228, 231, 234, 702, 735, 815, 1075
Sau3AI	GATC	4 cut(s)	88, 318, 418, 471
ScaI	AGTACT	2 cut(s)	409, 445
SchI	GAGTC	3 cut(s)	80, 187, 299
ScrFI	CCNGG	5 cut(s)	363, 476, 477, 744, 838
SduI	GDGCHC	1 cut(s)	979
SfaNI	GCATC	2 cut(s)	517, 562
SmaI	CCCGGG	1 cut(s)	477
SmiMI	CAYNNNNRTG	1 cut(s)	689
SmlI	CTYRAG	2 cut(s)	411, 1010
SmoI	CTYRAG	2 cut(s)	411, 1010
SpeI	ACTAGT	1 cut(s)	299
SphI	GCATGC	1 cut(s)	215
Sse9I	AATT	2 cut(s)	345, 676
SsiI	CCGC	2 cut(s)	219, 234
SspMI	CTAG	1 cut(s)	300
StyD4I	CCNGG	5 cut(s)	361, 474, 475, 742, 836
TaaI	ACNGT	1 cut(s)	162
TaiI	ACGT	2 cut(s)	524, 569
TaqI	TCGA	2 cut(s)	91, 255
TasI	AATT	2 cut(s)	345, 676
TatI	WGTACW	3 cut(s)	407, 443, 927
TauI	GCSGC	1 cut(s)	236
TfiI	GAWTC	2 cut(s)	191, 260
Tru1I	TTAA	3 cut(s)	246, 398, 552
Tru9I	TTAA	3 cut(s)	246, 398, 552
TscAI	CASTG	1 cut(s)	228
TseFI	GTSAC	1 cut(s)	302
TseI	GCWGC	7 cut(s)	78, 227, 230, 701, 734, 814, 1074
Tsp45I	GTSAC	1 cut(s)	302
TspDTI	ATGAA	4 cut(s)	309, 611, 707, 729
TspMI	CCCGGG	1 cut(s)	475
TspRI	CASTG	1 cut(s)	228
Van91I	CCANNNNNTGG	1 cut(s)	362
XceI	RCATGY	2 cut(s)	215, 1071
XmaI	CCCGGG	1 cut(s)	475
XmnI	GAANNNNTTC	2 cut(s)	149, 370
XspI	CTAG	1 cut(s)	300
ZrmI	AGTACT	2 cut(s)	409, 445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.