Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006559

Physical Location & Seq

Genomic Coordinates Reverse (-)

4970858 .. 4973726

Gene Structure 2869 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G14530.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGAGAAGCGGCGGCTTGGAAATGATGTCATCTTCAGCAATCGTAGCGTTTAATTTGAAGGAGGGTAAGAATTGGTGGTGGGATGTGAATGAATCTCCGGTGTGGCAGGATCGTATCTTCCATGTTCTTGCTGTTCTATATGGAATCGTTTCCGTCATTGCTGTGATTCAATTGGTAAGAATACAATTGAGAGTTCCAGAATATGGCTGGACGACGCAGAAGGTCTTTCATTTTCTCAATTTCATGGTTAACGGAGTTCGAGCTCTGGTTTTTCTCTTCCGGCGAGATGCACAGAACATGCAGCCAGAGATTCTGCAACATATCTTACTTGATATTCCAAGTCTTGCTTTCTTCACTACATATGCGCTTCTGGTTCTCTTTTGGGCAGAGATTTACTACCAGGCACGTGCTGTATCGACTGATGGACTGAGGCCAAGTTTCTTCACAATTAATGCAGTTGTATACGTAATTCAGATTGCTCTTTGGTTGGTTTTGTGGTGGAAGCCTGTTCACCTTATGGTAATCATTTCTAAGATGTTCTTTGCAGGTGTCTCATTGTTTGCGGCCCTTGGCTTTTTATTATATGGAGGAAGGCTTTTCCTGATGCTGCAACGATTTCCAGTAGAGTCTAAAGGGCGGCGCAAGAAGCTACAAGAGGTTGGCTACGTGACAACCATATGCTTTACATGTTTCCTCATCAGATGTATCATGGTAAAGATATACACATCATACTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0008150 GO:0009705 GO:0016020 GO:0016032 GO:0019058 GO:0019079 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046786 GO:0051704 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1084

Protein Analysis

245

Amino Acids

28.55

Weight (kDa)

9.68

Isoelectric Point (pI)

39.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
THH1_TOM1-3_dom	PF06454	23 - 293	9.1e-149	THH1/TOM1/TOM3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14530 AT1G14530 AT2G02180
fragaria_vesca	FvH4_4g36360
malus_domestica	MD13G1009600.v1.1 MD16G1008000.v1.1
prunus_persica	Prupe.1G342900_v2.0.a1
pyrus_communis	pycom13g00820 pycom16g00780
rosa_chinensis	RchiOBHm_Chr4g0446101 RchiOBHm_Chr5g0037351
rosa_laevigata	RLG00000005692 RLG00000033776
rosa_multiflora	Rmu_sc0007511.1_g000008
rosa_roxburghii	Rroxscaffold_5G00386500
rosa_rugosa	Rorug04G0367900 Rorug05G0164300
rosa_samantha	Rh4AG429400 Rh4BG438900 Rh4CG456200 Rh5AG253900 Rh5BG256000 Rh5CG289100 Rh5DG264400
rosa_wichuraiana	Rw4G036690 Rw5G023510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	536
Acc36I	ACCTGC	1 cut(s)	536
AccB7I	CCANNNNNTGG	1 cut(s)	203
AccI	GTMKAC	1 cut(s)	462
AciI	CCGC	4 cut(s)	9, 12, 563, 637
AclWI	GGATC	1 cut(s)	117
AcuI	CTGAAG	1 cut(s)	18
AcvI	CACGTG	1 cut(s)	407
AfiI	CCNNNNNNNGG	1 cut(s)	203
AflIII	ACRYGT	1 cut(s)	686
AgsI	TTSAA	2 cut(s)	58, 170
AjnI	CCWGG	1 cut(s)	399
AluBI	AGCT	2 cut(s)	263, 649
AluI	AGCT	2 cut(s)	263, 649
Alw21I	GWGCWC	1 cut(s)	265
Alw26I	GTCTC	1 cut(s)	556
AlwI	GGATC	1 cut(s)	117
AoxI	GGCC	2 cut(s)	431, 564
ApeKI	GCWGC	2 cut(s)	301, 607
AseI	ATTAAT	1 cut(s)	450
Asp700I	GAANNNNTTC	1 cut(s)	148
AspLEI	GCGC	2 cut(s)	367, 642
AspS9I	GGNCC	1 cut(s)	565
AsuHPI	GGTGA	1 cut(s)	503
BanII	GRGCYC	1 cut(s)	265
BbrPI	CACGTG	1 cut(s)	407
Bbv12I	GWGCWC	1 cut(s)	265
BbvI	GCAGC	2 cut(s)	313, 594
BccI	CCATC	1 cut(s)	416
BciT130I	CCWGG	1 cut(s)	401
BcoDI	GTCTC	1 cut(s)	556
BfuAI	ACCTGC	1 cut(s)	536
BisI	GCNGC	6 cut(s)	10, 13, 302, 564, 608, 638
BlsI	GCNGC	6 cut(s)	11, 14, 303, 565, 609, 639
Bme1390I	CCNGG	1 cut(s)	401
BmgT120I	GGNCC	1 cut(s)	565
BmrFI	CCNGG	1 cut(s)	401
BmsI	GCATC	2 cut(s)	277, 594
BsaAI	YACGTR	3 cut(s)	407, 466, 667
BsaJI	CCNNGG	1 cut(s)	568
BsaWI	WCCGGW	1 cut(s)	97
Bsc4I	CCNNNNNNNGG	1 cut(s)	203
Bse1I	ACTGG	1 cut(s)	620
Bse3DI	GCAATG	1 cut(s)	156
BseBI	CCWGG	1 cut(s)	401
BseDI	CCNNGG	1 cut(s)	568
BseGI	GGATG	1 cut(s)	88
BseLI	CCNNNNNNNGG	1 cut(s)	203
BseMI	GCAATG	1 cut(s)	156
BseMII	CTCAG	1 cut(s)	419
BseNI	ACTGG	1 cut(s)	620
BseXI	GCAGC	2 cut(s)	313, 594
BshFI	GGCC	2 cut(s)	433, 566
BsiHKAI	GWGCWC	1 cut(s)	265
BsiSI	CCGG	2 cut(s)	98, 280
BslI	CCNNNNNNNGG	1 cut(s)	203
BsmAI	GTCTC	1 cut(s)	556
BsnI	GGCC	2 cut(s)	433, 566
Bsp1286I	GDGCHC	1 cut(s)	265
Bsp143I	GATC	1 cut(s)	109
BspACI	CCGC	4 cut(s)	9, 12, 563, 637
BspANI	GGCC	2 cut(s)	433, 566
BspCNI	CTCAG	1 cut(s)	420
BspMI	ACCTGC	1 cut(s)	536
BspPI	GGATC	1 cut(s)	117
BsrDI	GCAATG	1 cut(s)	156
BsrI	ACTGG	1 cut(s)	620
BssECI	CCNNGG	1 cut(s)	568
BssMI	GATC	1 cut(s)	109
BssNAI	GTATAC	1 cut(s)	463
BssT1I	CCWWGG	1 cut(s)	568
Bst1107I	GTATAC	1 cut(s)	463
Bst2UI	CCWGG	1 cut(s)	401
Bst6I	CTCTTC	1 cut(s)	281
BstBAI	YACGTR	3 cut(s)	407, 466, 667
BstDEI	CTNAG	2 cut(s)	428, 531
BstF5I	GGATG	1 cut(s)	88
BstHHI	GCGC	2 cut(s)	367, 642
BstKTI	GATC	1 cut(s)	112
BstMAI	GTCTC	1 cut(s)	556
BstMBI	GATC	1 cut(s)	109
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 646
BstNI	CCWGG	1 cut(s)	401
BstNSI	RCATGY	2 cut(s)	301, 690
BstSCI	CCNGG	1 cut(s)	399
BstSNI	TACGTA	1 cut(s)	466
BstV1I	GCAGC	2 cut(s)	313, 594
BstZ17I	GTATAC	1 cut(s)	463
BsuRI	GGCC	2 cut(s)	433, 566
BtsCI	GGATG	1 cut(s)	88
BveI	ACCTGC	1 cut(s)	536
CfoI	GCGC	2 cut(s)	367, 642
Cfr13I	GGNCC	1 cut(s)	565
CseI	GACGC	1 cut(s)	223
CviAII	CATG	5 cut(s)	122, 244, 298, 687, 709
DdeI	CTNAG	2 cut(s)	428, 531
DpnI	GATC	1 cut(s)	111
DpnII	GATC	1 cut(s)	109
Eam1104I	CTCTTC	1 cut(s)	281
EarI	CTCTTC	1 cut(s)	281
Ecl136II	GAGCTC	1 cut(s)	263
Eco105I	TACGTA	1 cut(s)	466
Eco130I	CCWWGG	1 cut(s)	568
Eco24I	GRGCYC	1 cut(s)	265
Eco53kI	GAGCTC	1 cut(s)	263
Eco57I	CTGAAG	1 cut(s)	18
Eco72I	CACGTG	1 cut(s)	407
EcoICRI	GAGCTC	1 cut(s)	263
EcoRII	CCWGG	1 cut(s)	399
EcoT14I	CCWWGG	1 cut(s)	568
EcoT38I	GRGCYC	1 cut(s)	265
ErhI	CCWWGG	1 cut(s)	568
FaeI	CATG	5 cut(s)	125, 247, 301, 690, 712
FalI	AAGNNNNNCTT	4 cut(s)	331, 363, 524, 556
FatI	CATG	5 cut(s)	121, 243, 297, 686, 708
FauNDI	CATATG	2 cut(s)	361, 677
FblI	GTMKAC	1 cut(s)	462
Fnu4HI	GCNGC	6 cut(s)	10, 13, 302, 564, 608, 638
FokI	GGATG	1 cut(s)	95
FriOI	GRGCYC	1 cut(s)	265
Fsp4HI	GCNGC	6 cut(s)	10, 13, 302, 564, 608, 638
GlaI	GCGC	2 cut(s)	366, 641
GluI	GCNGC	6 cut(s)	10, 13, 302, 564, 608, 638
HaeIII	GGCC	2 cut(s)	433, 566
HapII	CCGG	2 cut(s)	98, 280
HgaI	GACGC	1 cut(s)	223
HhaI	GCGC	2 cut(s)	367, 642
Hin1II	CATG	5 cut(s)	125, 247, 301, 690, 712
Hin6I	GCGC	2 cut(s)	365, 640
HinP1I	GCGC	2 cut(s)	365, 640
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HinfI	GANTC	5 cut(s)	92, 144, 166, 310, 626
HpaI	GTTAAC	1 cut(s)	250
HpaII	CCGG	2 cut(s)	98, 280
HphI	GGTGA	1 cut(s)	503
Hpy166II	GTNNAC	3 cut(s)	250, 463, 511
Hpy188I	TCNGA	2 cut(s)	474, 701
Hpy188III	TCNNGA	2 cut(s)	197, 601
Hpy8I	GTNNAC	3 cut(s)	250, 463, 511
Hpy99I	CGWCG	1 cut(s)	217
HpyAV	CCTTC	3 cut(s)	52, 214, 585
HpyCH4IV	ACGT	3 cut(s)	406, 465, 666
HpyCH4V	TGCA	6 cut(s)	290, 301, 316, 455, 545, 610
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 646
HpyF3I	CTNAG	2 cut(s)	428, 531
HpySE526I	ACGT	3 cut(s)	406, 465, 666
Hsp92II	CATG	5 cut(s)	125, 247, 301, 690, 712
HspAI	GCGC	2 cut(s)	365, 640
KspAI	GTTAAC	1 cut(s)	250
Kzo9I	GATC	1 cut(s)	109
Lsp1109I	GCAGC	2 cut(s)	313, 594
LweI	GCATC	2 cut(s)	277, 594
MaeII	ACGT	3 cut(s)	406, 465, 666
MaeIII	GTNAC	1 cut(s)	667
MalI	GATC	1 cut(s)	111
MboI	GATC	1 cut(s)	109
MboII	GAAGA	5 cut(s)	24, 109, 268, 343, 433
MfeI	CAATTG	2 cut(s)	170, 185
MhlI	GDGCHC	1 cut(s)	265
MluCI	AATT	7 cut(s)	52, 70, 170, 185, 238, 447, 468
MlyI	GAGTC	1 cut(s)	635
MnlI	CCTC	5 cut(s)	55, 423, 581, 649, 704
MroXI	GAANNNNTTC	1 cut(s)	148
MseI	TTAA	3 cut(s)	51, 249, 450
MslI	CAYNNNNRTG	1 cut(s)	161
MspI	CCGG	2 cut(s)	98, 280
MspR9I	CCNGG	1 cut(s)	401
MunI	CAATTG	2 cut(s)	170, 185
MvaI	CCWGG	1 cut(s)	401
MwoI	GCNNNNNNNGC	2 cut(s)	44, 646
NdeI	CATATG	2 cut(s)	361, 677
NdeII	GATC	1 cut(s)	109
NlaIII	CATG	5 cut(s)	125, 247, 301, 690, 712
NmuCI	GTSAC	1 cut(s)	667
NspI	RCATGY	2 cut(s)	301, 690
PaqCI	CACCTGC	1 cut(s)	536
PciI	ACATGT	1 cut(s)	686
PdmI	GAANNNNTTC	1 cut(s)	148
PfeI	GAWTC	4 cut(s)	92, 144, 166, 310
PflMI	CCANNNNNTGG	1 cut(s)	203
PkrI	GCNGC	6 cut(s)	11, 14, 303, 565, 609, 639
PleI	GAGTC	1 cut(s)	634
PmaCI	CACGTG	1 cut(s)	407
PmlI	CACGTG	1 cut(s)	407
PpsI	GAGTC	1 cut(s)	634
Ppu21I	YACGTR	3 cut(s)	407, 466, 667
PscI	ACATGT	1 cut(s)	686
PshBI	ATTAAT	1 cut(s)	450
Psp124BI	GAGCTC	1 cut(s)	265
Psp6I	CCWGG	1 cut(s)	399
PspCI	CACGTG	1 cut(s)	407
PspGI	CCWGG	1 cut(s)	399
PspPI	GGNCC	1 cut(s)	565
RseI	CAYNNNNRTG	1 cut(s)	161
SacI	GAGCTC	1 cut(s)	265
SaqAI	TTAA	3 cut(s)	51, 249, 450
SatI	GCNGC	6 cut(s)	10, 13, 302, 564, 608, 638
Sau3AI	GATC	1 cut(s)	109
Sau96I	GGNCC	1 cut(s)	565
SchI	GAGTC	1 cut(s)	635
ScrFI	CCNGG	1 cut(s)	401
SduI	GDGCHC	1 cut(s)	265
SetI	ASST	9 cut(s)	225, 265, 409, 468, 516, 550, 651, 660, 669
SfaNI	GCATC	2 cut(s)	277, 594
SmiMI	CAYNNNNRTG	1 cut(s)	161
SnaBI	TACGTA	1 cut(s)	466
Sse9I	AATT	7 cut(s)	52, 70, 170, 185, 238, 447, 468
SsiI	CCGC	4 cut(s)	9, 12, 563, 637
SstI	GAGCTC	1 cut(s)	265
StyD4I	CCNGG	1 cut(s)	399
StyI	CCWWGG	1 cut(s)	568
TaiI	ACGT	3 cut(s)	409, 468, 669
TaqI	TCGA	2 cut(s)	259, 416
TasI	AATT	7 cut(s)	52, 70, 170, 185, 238, 447, 468
TauI	GCSGC	4 cut(s)	12, 15, 566, 640
TfiI	GAWTC	4 cut(s)	92, 144, 166, 310
Tru1I	TTAA	3 cut(s)	51, 249, 450
Tru9I	TTAA	3 cut(s)	51, 249, 450
TseFI	GTSAC	1 cut(s)	667
TseI	GCWGC	2 cut(s)	301, 607
Tsp45I	GTSAC	1 cut(s)	667
TspDTI	ATGAA	3 cut(s)	105, 218, 232
TspGWI	ACGGA	2 cut(s)	142, 267
Van91I	CCANNNNNTGG	1 cut(s)	203
VspI	ATTAAT	1 cut(s)	450
XceI	RCATGY	2 cut(s)	301, 690
XcmI	CCANNNNNNNNNTGG	1 cut(s)	204
XmiI	GTMKAC	1 cut(s)	462
XmnI	GAANNNNTTC	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.