Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006559

Physical Location & Seq

Genomic Coordinates Forward (+)

66382923 .. 66389665

Gene Structure 6743 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41362

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGCGCGCGGCGGCGGCGGTAGCGTGGTGGAGTCGGCGGCGGCGGTGATAGCTTACAATCTGAAAGACTCGTCGAGTTGGTGGCACGACATCAATGCCTCGCAGCTCTGGCAAGACCGAATCTTCCACGGCCTCGCCATTCTCTACGGCCTCGTCGCCGTCGTTGCCCTGGTTCAACTGATCCGGATACAAGTGCGGGTGCCGGAGTACGGCTGGACCACGCAGAAGGTCTTCCACTTTCTCAATTTTGTTGTCAATGCAGTTCGAGCAGCAGTGTTCATTTTCCGCCGGCAAGTACAGAAGCTGCATCCAGAGATTCTCCAACATGTATTGCTTGATATGCCGAGTCTGGCTTTCTTCACTACTTACGCGCTCCTGGTTCTGTTCTGGGCAGAAATTTACTATCAGGCGCGTGCTGTTTCTACAGATGGACTGAGGCCGAGCTTCTTTACAATCAATGCTGCCGTTTATGTAATTCAGATATCTATGTGGTTGATATTATGGTGGAAGCCTATCCCAGTCGTGGTCGTCTTATCTAAAATGTTCTTTGCAGGTGTCTCCTTATTTGCAGCCCTTGGATTTCTTCTGTATGGTGGAAGACTCTTTTTGATGTTGCAGAGATTTCCTGTGGAGTCAAAAGGAAGACGTAAGAAGCTGCAGGAGGTTGGCTACGTGACAACCATATGTTTTACTTGTTTCCTTGTCAGATGCGTAATGATGTGCTTATGTGCATTTGACAAGGCGGCAGACCTTGATGTTTTGAATCACCCAATTCTAAACTTAATATATTACCTGTTGGTGGAGATATTGCCTTCTTCTTTGGTTCTTTTCATTTTGAGGAAGTTGCCTCCAAAGCGTGGGATCACACAATATCATCCTATTCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0008150 GO:0009705 GO:0016020 GO:0016032 GO:0019058 GO:0019079 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046786 GO:0051704 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1084

Protein Analysis

295

Amino Acids

33.71

Weight (kDa)

9.71

Isoelectric Point (pI)

41.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
THH1_TOM1-3_dom	PF06454	24 - 295	7e-149	THH1/TOM1/TOM3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14530 AT1G14530 AT2G02180
fragaria_vesca	FvH4_4g36360
malus_domestica	MD13G1009600.v1.1 MD16G1008000.v1.1
prunus_persica	Prupe.1G342900_v2.0.a1
pyrus_communis	pycom13g00820 pycom16g00780
rosa_chinensis	RchiOBHm_Chr4g0446101 RchiOBHm_Chr5g0037351
rosa_laevigata	RLG00000005692 RLG00000033776
rosa_multiflora	Rmu_sc0007511.1_g000008
rosa_roxburghii	Rroxscaffold_5G00386500
rosa_rugosa	Rorug04G0367900 Rorug05G0164300
rosa_samantha	Rh4AG429400 Rh4BG438900 Rh4CG456200 Rh5AG253900 Rh5BG256000 Rh5CG289100 Rh5DG264400
rosa_wichuraiana	Rw4G036690 Rw5G023510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	542
Acc36I	ACCTGC	1 cut(s)	542
AccB1I	GGYRCC	1 cut(s)	199
AccB7I	CCANNNNNTGG	1 cut(s)	857
AccII	CGCG	4 cut(s)	7, 9, 371, 412
AccIII	TCCGGA	1 cut(s)	183
AclWI	GGATC	2 cut(s)	175, 869
AcsI	RAATTY	1 cut(s)	396
AfaI	GTAC	2 cut(s)	209, 297
AfiI	CCNNNNNNNGG	4 cut(s)	209, 523, 799, 857
AflIII	ACRYGT	1 cut(s)	325
AgsI	TTSAA	2 cut(s)	176, 763
AjnI	CCWGG	2 cut(s)	168, 375
AluBI	AGCT	5 cut(s)	53, 106, 304, 444, 655
AluI	AGCT	5 cut(s)	53, 106, 304, 444, 655
Alw26I	GTCTC	1 cut(s)	562
AlwI	GGATC	2 cut(s)	175, 869
AlwNI	CAGNNNCTG	1 cut(s)	304
Aor13HI	TCCGGA	1 cut(s)	183
AoxI	GGCC	3 cut(s)	130, 148, 437
ApeKI	GCWGC	6 cut(s)	103, 269, 304, 461, 569, 655
ApoI	RAATTY	1 cut(s)	396
Asp700I	GAANNNNTTC	1 cut(s)	230
AspLEI	GCGC	4 cut(s)	7, 9, 373, 412
AspS9I	GGNCC	1 cut(s)	216
AsuHPI	GGTGA	2 cut(s)	58, 758
AvaII	GGWCC	1 cut(s)	216
BanI	GGYRCC	1 cut(s)	199
BbsI	GAAGAC	3 cut(s)	223, 604, 649
BbvI	GCAGC	6 cut(s)	115, 281, 291, 448, 581, 642
BccI	CCATC	1 cut(s)	422
BceAI	ACGGC	5 cut(s)	143, 145, 163, 226, 449
BcgI	CGANNNNNNTGC	2 cut(s)	77, 111
BciT130I	CCWGG	2 cut(s)	170, 377
BciVI	GTATCC	1 cut(s)	180
BcoDI	GTCTC	1 cut(s)	562
BfmI	CTRYAG	2 cut(s)	423, 656
BfuAI	ACCTGC	1 cut(s)	542
BfuI	GTATCC	1 cut(s)	180
Bme1390I	CCNGG	2 cut(s)	170, 377
Bme18I	GGWCC	1 cut(s)	216
BmgT120I	GGNCC	1 cut(s)	216
BmiI	GGNNCC	1 cut(s)	201
BmrFI	CCNGG	2 cut(s)	170, 377
BmrI	ACTGGG	1 cut(s)	512
BmsI	GCATC	2 cut(s)	316, 698
BmuI	ACTGGG	1 cut(s)	512
BpiI	GAAGAC	3 cut(s)	223, 604, 649
BsaAI	YACGTR	1 cut(s)	673
BsaJI	CCNNGG	3 cut(s)	127, 168, 574
BsaWI	WCCGGW	1 cut(s)	183
Bsc4I	CCNNNNNNNGG	4 cut(s)	209, 523, 799, 857
Bse118I	RCCGGY	1 cut(s)	288
Bse1I	ACTGG	1 cut(s)	518
BseAI	TCCGGA	1 cut(s)	183
BseBI	CCWGG	2 cut(s)	170, 377
BseDI	CCNNGG	3 cut(s)	127, 168, 574
BseGI	GGATG	2 cut(s)	307, 874
BseLI	CCNNNNNNNGG	4 cut(s)	209, 523, 799, 857
BseMII	CTCAG	1 cut(s)	425
BseNI	ACTGG	1 cut(s)	518
BsePI	GCGCGC	1 cut(s)	5
BseXI	GCAGC	6 cut(s)	115, 281, 291, 448, 581, 642
Bsh1236I	CGCG	4 cut(s)	7, 9, 371, 412
BshFI	GGCC	3 cut(s)	132, 150, 439
BshNI	GGYRCC	1 cut(s)	199
BsiSI	CCGG	3 cut(s)	184, 203, 289
BslI	CCNNNNNNNGG	4 cut(s)	209, 523, 799, 857
BsmAI	GTCTC	1 cut(s)	562
BsnI	GGCC	3 cut(s)	132, 150, 439
Bsp13I	TCCGGA	1 cut(s)	183
Bsp143I	GATC	2 cut(s)	180, 861
BspANI	GGCC	3 cut(s)	132, 150, 439
BspCNI	CTCAG	1 cut(s)	426
BspEI	TCCGGA	1 cut(s)	183
BspFNI	CGCG	4 cut(s)	7, 9, 371, 412
BspLI	GGNNCC	1 cut(s)	201
BspMAI	CTGCAG	1 cut(s)	660
BspMI	ACCTGC	1 cut(s)	542
BspPI	GGATC	2 cut(s)	175, 869
BspT107I	GGYRCC	1 cut(s)	199
BsrFI	RCCGGY	1 cut(s)	288
BsrI	ACTGG	1 cut(s)	518
BssAI	RCCGGY	1 cut(s)	288
BssECI	CCNNGG	3 cut(s)	127, 168, 574
BssHII	GCGCGC	1 cut(s)	5
BssMI	GATC	2 cut(s)	180, 861
BssT1I	CCWWGG	1 cut(s)	574
Bst2UI	CCWGG	2 cut(s)	170, 377
BstBAI	YACGTR	1 cut(s)	673
BstC8I	GCNNGC	3 cut(s)	7, 290, 414
BstDEI	CTNAG	1 cut(s)	434
BstDSI	CCRYGG	1 cut(s)	127
BstF5I	GGATG	2 cut(s)	307, 874
BstFNI	CGCG	4 cut(s)	7, 9, 371, 412
BstHHI	GCGC	4 cut(s)	7, 9, 373, 412
BstKTI	GATC	2 cut(s)	183, 864
BstMAI	GTCTC	1 cut(s)	562
BstMBI	GATC	2 cut(s)	180, 861
BstMWI	GCNNNNNNNGC	8 cut(s)	15, 21, 50, 109, 164, 266, 340, 853
BstNI	CCWGG	2 cut(s)	170, 377
BstNSI	RCATGY	1 cut(s)	329
BstSCI	CCNGG	2 cut(s)	168, 375
BstSFI	CTRYAG	2 cut(s)	423, 656
BstUI	CGCG	4 cut(s)	7, 9, 371, 412
BstV1I	GCAGC	6 cut(s)	115, 281, 291, 448, 581, 642
BstV2I	GAAGAC	3 cut(s)	223, 604, 649
BsuI	GTATCC	1 cut(s)	180
BsuRI	GGCC	3 cut(s)	132, 150, 439
BtgI	CCRYGG	1 cut(s)	127
BtsCI	GGATG	2 cut(s)	307, 874
BtsI	GCAGTG	1 cut(s)	279
BtsIMutI	CAGTG	1 cut(s)	279
BveI	ACCTGC	1 cut(s)	542
Cac8I	GCNNGC	3 cut(s)	7, 290, 414
CaiI	CAGNNNCTG	1 cut(s)	304
CfoI	GCGC	4 cut(s)	7, 9, 373, 412
Cfr10I	RCCGGY	1 cut(s)	288
Cfr13I	GGNCC	1 cut(s)	216
Csp6I	GTAC	2 cut(s)	208, 296
CviAII	CATG	1 cut(s)	326
CviQI	GTAC	2 cut(s)	208, 296
DdeI	CTNAG	1 cut(s)	434
DpnI	GATC	2 cut(s)	182, 863
DpnII	GATC	2 cut(s)	180, 861
EciI	GGCGGA	1 cut(s)	275
Eco130I	CCWWGG	1 cut(s)	574
Eco32I	GATATC	1 cut(s)	483
Eco47I	GGWCC	1 cut(s)	216
EcoRII	CCWGG	2 cut(s)	168, 375
EcoRV	GATATC	1 cut(s)	483
EcoT14I	CCWWGG	1 cut(s)	574
ErhI	CCWWGG	1 cut(s)	574
FaeI	CATG	1 cut(s)	329
FatI	CATG	1 cut(s)	325
FauI	CCCGC	1 cut(s)	189
FauNDI	CATATG	1 cut(s)	683
FokI	GGATG	2 cut(s)	294, 861
GlaI	GCGC	4 cut(s)	6, 8, 372, 411
HaeIII	GGCC	3 cut(s)	132, 150, 439
HapII	CCGG	3 cut(s)	184, 203, 289
HhaI	GCGC	4 cut(s)	7, 9, 373, 412
Hin1II	CATG	1 cut(s)	329
Hin6I	GCGC	4 cut(s)	5, 7, 371, 410
HinP1I	GCGC	4 cut(s)	5, 7, 371, 410
HinfI	GANTC	8 cut(s)	32, 68, 120, 316, 346, 600, 632, 763
HpaII	CCGG	3 cut(s)	184, 203, 289
HphI	GGTGA	2 cut(s)	58, 758
Hpy188I	TCNGA	3 cut(s)	63, 480, 707
Hpy188III	TCNNGA	2 cut(s)	184, 311
Hpy99I	CGWCG	3 cut(s)	76, 158, 164
HpyAV	CCTTC	2 cut(s)	220, 822
HpyCH4IV	ACGT	2 cut(s)	646, 672
HpyCH4V	TGCA	7 cut(s)	260, 307, 551, 569, 616, 658, 731
HpyF10VI	GCNNNNNNNGC	8 cut(s)	15, 21, 50, 109, 164, 266, 340, 853
HpyF3I	CTNAG	1 cut(s)	434
HpySE526I	ACGT	2 cut(s)	646, 672
Hsp92II	CATG	1 cut(s)	329
HspAI	GCGC	4 cut(s)	5, 7, 371, 410
Kpn2I	TCCGGA	1 cut(s)	183
KroI	GCCGGC	1 cut(s)	288
KroNI	GCCGGC	1 cut(s)	290
Kzo9I	GATC	2 cut(s)	180, 861
LmnI	GCTCC	1 cut(s)	378
Lsp1109I	GCAGC	6 cut(s)	115, 281, 291, 448, 581, 642
LweI	GCATC	2 cut(s)	316, 698
MaeII	ACGT	2 cut(s)	646, 672
MaeIII	GTNAC	1 cut(s)	673
MalI	GATC	2 cut(s)	182, 863
MboI	GATC	2 cut(s)	180, 861
MboII	GAAGA	7 cut(s)	115, 223, 349, 575, 609, 654, 807
MluCI	AATT	4 cut(s)	244, 396, 474, 771
MlyI	GAGTC	5 cut(s)	41, 62, 355, 594, 641
MmeI	TCCRAC	1 cut(s)	346
MnlI	CCTC	7 cut(s)	109, 143, 161, 429, 655, 831, 858
MroI	TCCGGA	1 cut(s)	183
MroNI	GCCGGC	1 cut(s)	288
MroXI	GAANNNNTTC	1 cut(s)	230
MseI	TTAA	1 cut(s)	782
MspI	CCGG	3 cut(s)	184, 203, 289
MspR9I	CCNGG	2 cut(s)	170, 377
MvaI	CCWGG	2 cut(s)	170, 377
MvnI	CGCG	4 cut(s)	7, 9, 371, 412
MwoI	GCNNNNNNNGC	8 cut(s)	15, 21, 50, 109, 164, 266, 340, 853
NaeI	GCCGGC	1 cut(s)	290
NdeI	CATATG	1 cut(s)	683
NdeII	GATC	2 cut(s)	180, 861
NgoMIV	GCCGGC	1 cut(s)	288
NlaIII	CATG	1 cut(s)	329
NlaIV	GGNNCC	1 cut(s)	201
NmeAIII	GCCGAG	2 cut(s)	369, 465
NmuCI	GTSAC	1 cut(s)	673
NspI	RCATGY	1 cut(s)	329
PaqCI	CACCTGC	1 cut(s)	542
PauI	GCGCGC	1 cut(s)	5
PciI	ACATGT	1 cut(s)	325
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PdiI	GCCGGC	1 cut(s)	290
PdmI	GAANNNNTTC	1 cut(s)	230
PfeI	GAWTC	3 cut(s)	120, 316, 763
PflMI	CCANNNNNTGG	1 cut(s)	857
PleI	GAGTC	5 cut(s)	40, 62, 354, 594, 640
PpsI	GAGTC	5 cut(s)	40, 62, 354, 594, 640
Ppu21I	YACGTR	1 cut(s)	673
PscI	ACATGT	1 cut(s)	325
Psp6I	CCWGG	2 cut(s)	168, 375
PspGI	CCWGG	2 cut(s)	168, 375
PspN4I	GGNNCC	1 cut(s)	201
PspPI	GGNCC	1 cut(s)	216
PstI	CTGCAG	1 cut(s)	660
PstNI	CAGNNNCTG	1 cut(s)	304
PteI	GCGCGC	1 cut(s)	5
RsaI	GTAC	2 cut(s)	209, 297
RsaNI	GTAC	2 cut(s)	208, 296
SaqAI	TTAA	1 cut(s)	782
Sau3AI	GATC	2 cut(s)	180, 861
Sau96I	GGNCC	1 cut(s)	216
SchI	GAGTC	5 cut(s)	41, 62, 355, 594, 641
ScrFI	CCNGG	2 cut(s)	170, 377
SfaNI	GCATC	2 cut(s)	316, 698
SfcI	CTRYAG	2 cut(s)	423, 656
SinI	GGWCC	1 cut(s)	216
Sse9I	AATT	4 cut(s)	244, 396, 474, 771
StyD4I	CCNGG	2 cut(s)	168, 375
StyI	CCWWGG	1 cut(s)	574
TaiI	ACGT	2 cut(s)	649, 675
TaqI	TCGA	2 cut(s)	74, 265
TaqII	GACCGA	1 cut(s)	132
TasI	AATT	4 cut(s)	244, 396, 474, 771
TatI	WGTACW	1 cut(s)	295
TauI	GCSGC	6 cut(s)	12, 15, 18, 41, 44, 746
TfiI	GAWTC	3 cut(s)	120, 316, 763
Tru1I	TTAA	1 cut(s)	782
Tru9I	TTAA	1 cut(s)	782
TscAI	CASTG	1 cut(s)	279
TseFI	GTSAC	1 cut(s)	673
TseI	GCWGC	6 cut(s)	103, 269, 304, 461, 569, 655
Tsp45I	GTSAC	1 cut(s)	673
TspDTI	ATGAA	2 cut(s)	268, 820
TspRI	CASTG	1 cut(s)	279
Van91I	CCANNNNNTGG	1 cut(s)	857
VpaK11BI	GGWCC	1 cut(s)	216
XapI	RAATTY	1 cut(s)	396
XceI	RCATGY	1 cut(s)	329
XmnI	GAANNNNTTC	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.