Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006559

Physical Location & Seq

Genomic Coordinates Forward (+)

32175263 .. 32182702

Gene Structure 7440 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G342900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGGGCACGGCGGCGGCGGTAGCAGCGTGGGGCTGGTTCAGTCGGCGGTGAAAGCTTACAATCTGAGAGACGCGTCCAATTGGTGGCATGACGTCAATGACTCTCCTATTTGGCAAGACCGTATATTTCACGCTCTCGCTCTTCTATACGGTCTCGTCGCCATCGTTGCCCTGGTTCAATTGATTCGTATACAATTGAGAGTGCCGGAGTACGGTTGGACCACACAGAAGGTCTTCCACTTTCTCAATTTTGTTGTCAATGCAGTTCGAGCAGCAGTGTTTATTTTCCGCCGGCAAGTGCAGAAGCTGCATCCAGAGATTGTCAAACATATCTTGCTTGATATGCCAAGTCTTGCTTTCTTCACAACTTACGCACTCTTGGTTCTGTTCTGGGCAGAAATTTACTATCAGGCACGTGCTGTTTCTACAGATGGACTGAGGCCAAGCTTCTTTACTATTAATGCTGTGGTTTATGTAATTCAGATTGCTATGTGGTTGATATTATGGTGGAAGCCTATACCAGTTCTGCTCATCTTAGCTAAGATGTTCTTTGCAGGTGTGTCCTTATTTGCAGCCGTTGGGTTTCTTCTATATGGCGGAAGACTCTTCTTGATGTTGCAGCGATTTCCTGTAGAATCAAAAGGACGACGTAAGAAGCTGCAGGAGGTTGGCTATGTGACAACCATATGTTTTGCATGTTTCCTTGTCAGATGCATAATGATGTGCTTCAATGCATTTGATAAAGCAGCAGATCTTGATGTTTTGAATCACCCAATTCTAAACTTTATATATTACCTGTTGGTGGAGATATTGCCTTCTTCTTTGGTCCTTTTCATTTTGAGGAAGTTGCCTCCAAAGCGCGGGATCACACAATATCACCCTATTCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0008150 GO:0009705 GO:0016020 GO:0016032 GO:0019058 GO:0019079 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046786 GO:0051704 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1084

Protein Analysis

297

Amino Acids

33.97

Weight (kDa)

9.81

Isoelectric Point (pI)

42.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14530 AT1G14530 AT2G02180
fragaria_vesca	FvH4_4g36360
malus_domestica	MD13G1009600.v1.1 MD16G1008000.v1.1
prunus_persica	Prupe.1G342900_v2.0.a1
pyrus_communis	pycom13g00820 pycom16g00780
rosa_chinensis	RchiOBHm_Chr4g0446101 RchiOBHm_Chr5g0037351
rosa_laevigata	RLG00000005692 RLG00000033776
rosa_multiflora	Rmu_sc0007511.1_g000008
rosa_roxburghii	Rroxscaffold_5G00386500
rosa_rugosa	Rorug04G0367900 Rorug05G0164300
rosa_samantha	Rh4AG429400 Rh4BG438900 Rh4CG456200 Rh5AG253900 Rh5BG256000 Rh5CG289100 Rh5DG264400
rosa_wichuraiana	Rw4G036690 Rw5G023510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	545
AatII	GACGTC	1 cut(s)	96
Acc36I	ACCTGC	1 cut(s)	545
AccB7I	CCANNNNNTGG	1 cut(s)	84
AccI	GTMKAC	1 cut(s)	190
AccII	CGCG	2 cut(s)	74, 861
AciI	CCGC	7 cut(s)	12, 15, 18, 47, 289, 597, 861
AclWI	GGATC	1 cut(s)	872
AcsI	RAATTY	1 cut(s)	399
AcvI	CACGTG	1 cut(s)	416
AcyI	GRCGYC	1 cut(s)	93
AfaI	GTAC	1 cut(s)	212
AfiI	CCNNNNNNNGG	4 cut(s)	84, 212, 802, 860
AflIII	ACRYGT	1 cut(s)	72
AgsI	TTSAA	3 cut(s)	179, 730, 766
AjnI	CCWGG	1 cut(s)	171
AluBI	AGCT	5 cut(s)	56, 307, 447, 539, 658
AluI	AGCT	5 cut(s)	56, 307, 447, 539, 658
Alw26I	GTCTC	2 cut(s)	63, 158
AlwI	GGATC	1 cut(s)	872
AlwNI	CAGNNNCTG	1 cut(s)	307
AoxI	GGCC	1 cut(s)	440
ApeKI	GCWGC	7 cut(s)	24, 272, 307, 572, 619, 658, 746
ApoI	RAATTY	1 cut(s)	399
AseI	ATTAAT	1 cut(s)	459
Asp700I	GAANNNNTTC	1 cut(s)	233
AspLEI	GCGC	1 cut(s)	861
AspS9I	GGNCC	2 cut(s)	219, 826
AsuHPI	GGTGA	3 cut(s)	61, 761, 869
AvaII	GGWCC	2 cut(s)	219, 826
BaeGI	GKGCMC	1 cut(s)	9
BbrPI	CACGTG	1 cut(s)	416
BbsI	GAAGAC	2 cut(s)	226, 607
BbvI	GCAGC	7 cut(s)	36, 284, 294, 584, 631, 645, 758
BccI	CCATC	2 cut(s)	170, 425
BceAI	ACGGC	2 cut(s)	25, 560
BciT130I	CCWGG	1 cut(s)	173
BcoDI	GTCTC	2 cut(s)	63, 158
BfmI	CTRYAG	3 cut(s)	426, 630, 659
BfuAI	ACCTGC	1 cut(s)	545
BglII	AGATCT	1 cut(s)	751
BisI	GCNGC	9 cut(s)	13, 16, 25, 273, 308, 573, 620, 659, 747
BlsI	GCNGC	9 cut(s)	14, 17, 26, 274, 309, 574, 621, 660, 748
Bme1390I	CCNGG	1 cut(s)	173
Bme18I	GGWCC	2 cut(s)	219, 826
BmgT120I	GGNCC	2 cut(s)	219, 826
BmrFI	CCNGG	1 cut(s)	173
BmsI	GCATC	2 cut(s)	319, 701
BpiI	GAAGAC	2 cut(s)	226, 607
BsaAI	YACGTR	1 cut(s)	416
BsaHI	GRCGYC	1 cut(s)	93
BsaI	GGTCTC	1 cut(s)	158
BsaJI	CCNNGG	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	4 cut(s)	84, 212, 802, 860
Bse118I	RCCGGY	1 cut(s)	291
Bse1I	ACTGG	1 cut(s)	521
BseBI	CCWGG	1 cut(s)	173
BseDI	CCNNGG	1 cut(s)	171
BseGI	GGATG	1 cut(s)	310
BseLI	CCNNNNNNNGG	4 cut(s)	84, 212, 802, 860
BseMII	CTCAG	2 cut(s)	56, 428
BseNI	ACTGG	1 cut(s)	521
BseSI	GKGCMC	1 cut(s)	9
BseXI	GCAGC	7 cut(s)	36, 284, 294, 584, 631, 645, 758
BsgI	GTGCAG	1 cut(s)	320
Bsh1236I	CGCG	2 cut(s)	74, 861
BshFI	GGCC	1 cut(s)	442
BsiSI	CCGG	2 cut(s)	206, 292
BslI	CCNNNNNNNGG	4 cut(s)	84, 212, 802, 860
BsmAI	GTCTC	2 cut(s)	63, 158
BsmBI	CGTCTC	1 cut(s)	63
BsnI	GGCC	1 cut(s)	442
Bso31I	GGTCTC	1 cut(s)	158
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp143I	GATC	2 cut(s)	751, 864
BspACI	CCGC	7 cut(s)	12, 15, 18, 47, 289, 597, 861
BspANI	GGCC	1 cut(s)	442
BspCNI	CTCAG	2 cut(s)	57, 429
BspFNI	CGCG	2 cut(s)	74, 861
BspMAI	CTGCAG	1 cut(s)	663
BspMI	ACCTGC	1 cut(s)	545
BspPI	GGATC	1 cut(s)	872
BspQI	GCTCTTC	1 cut(s)	147
BspTNI	GGTCTC	1 cut(s)	158
BsrFI	RCCGGY	1 cut(s)	291
BsrI	ACTGG	1 cut(s)	521
BssAI	RCCGGY	1 cut(s)	291
BssECI	CCNNGG	1 cut(s)	171
BssMI	GATC	2 cut(s)	751, 864
BssNAI	GTATAC	1 cut(s)	191
BssNI	GRCGYC	1 cut(s)	93
Bst1107I	GTATAC	1 cut(s)	191
Bst2UI	CCWGG	1 cut(s)	173
Bst4CI	ACNGT	3 cut(s)	122, 152, 215
Bst6I	CTCTTC	2 cut(s)	147, 611
BstACI	GRCGYC	1 cut(s)	93
BstAPI	GCANNNNNTGC	1 cut(s)	307
BstBAI	YACGTR	1 cut(s)	416
BstC8I	GCNNGC	1 cut(s)	293
BstDEI	CTNAG	4 cut(s)	65, 437, 535, 540
BstF5I	GGATG	1 cut(s)	310
BstFNI	CGCG	2 cut(s)	74, 861
BstHHI	GCGC	1 cut(s)	861
BstKTI	GATC	2 cut(s)	754, 867
BstMAI	GTCTC	2 cut(s)	63, 158
BstMBI	GATC	2 cut(s)	751, 864
BstMWI	GCNNNNNNNGC	8 cut(s)	21, 24, 53, 167, 269, 307, 343, 856
BstNI	CCWGG	1 cut(s)	173
BstNSI	RCATGY	1 cut(s)	699
BstSCI	CCNGG	1 cut(s)	171
BstSFI	CTRYAG	3 cut(s)	426, 630, 659
BstSLI	GKGCMC	1 cut(s)	9
BstUI	CGCG	2 cut(s)	74, 861
BstV1I	GCAGC	7 cut(s)	36, 284, 294, 584, 631, 645, 758
BstV2I	GAAGAC	2 cut(s)	226, 607
BstX2I	RGATCY	1 cut(s)	751
BstYI	RGATCY	1 cut(s)	751
BstZ17I	GTATAC	1 cut(s)	191
BsuRI	GGCC	1 cut(s)	442
BtsCI	GGATG	1 cut(s)	310
BtsI	GCAGTG	1 cut(s)	282
BtsIMutI	CAGTG	1 cut(s)	282
BveI	ACCTGC	1 cut(s)	545
Cac8I	GCNNGC	1 cut(s)	293
CaiI	CAGNNNCTG	1 cut(s)	307
CfoI	GCGC	1 cut(s)	861
Cfr10I	RCCGGY	1 cut(s)	291
Cfr13I	GGNCC	2 cut(s)	219, 826
CseI	GACGC	2 cut(s)	63, 80
Csp6I	GTAC	1 cut(s)	211
CviAII	CATG	2 cut(s)	89, 696
CviQI	GTAC	1 cut(s)	211
DdeI	CTNAG	4 cut(s)	65, 437, 535, 540
DpnI	GATC	2 cut(s)	753, 866
DpnII	GATC	2 cut(s)	751, 864
Eam1104I	CTCTTC	2 cut(s)	147, 611
EarI	CTCTTC	2 cut(s)	147, 611
EciI	GGCGGA	2 cut(s)	278, 612
Eco31I	GGTCTC	1 cut(s)	158
Eco47I	GGWCC	2 cut(s)	219, 826
Eco72I	CACGTG	1 cut(s)	416
EcoRII	CCWGG	1 cut(s)	171
EcoT22I	ATGCAT	2 cut(s)	716, 736
Esp3I	CGTCTC	1 cut(s)	63
FaeI	CATG	2 cut(s)	92, 699
FalI	AAGNNNNNCTT	4 cut(s)	340, 372, 533, 565
FatI	CATG	2 cut(s)	88, 695
FauI	CCCGC	1 cut(s)	854
FauNDI	CATATG	1 cut(s)	686
FblI	GTMKAC	1 cut(s)	190
Fnu4HI	GCNGC	9 cut(s)	13, 16, 25, 273, 308, 573, 620, 659, 747
FokI	GGATG	1 cut(s)	297
Fsp4HI	GCNGC	9 cut(s)	13, 16, 25, 273, 308, 573, 620, 659, 747
GlaI	GCGC	1 cut(s)	860
GluI	GCNGC	9 cut(s)	13, 16, 25, 273, 308, 573, 620, 659, 747
HaeIII	GGCC	1 cut(s)	442
HapII	CCGG	2 cut(s)	206, 292
HgaI	GACGC	2 cut(s)	63, 80
HhaI	GCGC	1 cut(s)	861
Hin1I	GRCGYC	1 cut(s)	93
Hin1II	CATG	2 cut(s)	92, 699
Hin6I	GCGC	1 cut(s)	859
HinP1I	GCGC	1 cut(s)	859
HindIII	AAGCTT	2 cut(s)	54, 445
HinfI	GANTC	5 cut(s)	101, 184, 603, 635, 766
HpaII	CCGG	2 cut(s)	206, 292
HphI	GGTGA	3 cut(s)	61, 761, 869
Hpy166II	GTNNAC	1 cut(s)	191
Hpy188I	TCNGA	3 cut(s)	66, 483, 710
Hpy188III	TCNNGA	3 cut(s)	314, 610, 755
Hpy8I	GTNNAC	1 cut(s)	191
Hpy99I	CGWCG	2 cut(s)	161, 651
HpyAV	CCTTC	2 cut(s)	223, 825
HpyCH4III	ACNGT	3 cut(s)	122, 152, 215
HpyCH4IV	ACGT	3 cut(s)	93, 415, 649
HpyF10VI	GCNNNNNNNGC	8 cut(s)	21, 24, 53, 167, 269, 307, 343, 856
HpyF3I	CTNAG	4 cut(s)	65, 437, 535, 540
HpySE526I	ACGT	3 cut(s)	93, 415, 649
Hsp92I	GRCGYC	1 cut(s)	93
Hsp92II	CATG	2 cut(s)	92, 699
HspAI	GCGC	1 cut(s)	859
KroI	GCCGGC	1 cut(s)	291
KroNI	GCCGGC	1 cut(s)	293
Kzo9I	GATC	2 cut(s)	751, 864
LguI	GCTCTTC	1 cut(s)	147
Lsp1109I	GCAGC	7 cut(s)	36, 284, 294, 584, 631, 645, 758
LweI	GCATC	2 cut(s)	319, 701
MaeII	ACGT	3 cut(s)	93, 415, 649
MaeIII	GTNAC	1 cut(s)	676
MalI	GATC	2 cut(s)	753, 866
MboI	GATC	2 cut(s)	751, 864
MboII	GAAGA	7 cut(s)	134, 226, 352, 578, 598, 612, 810
MfeI	CAATTG	3 cut(s)	79, 179, 194
MflI	RGATCY	1 cut(s)	751
MhlI	GDGCHC	1 cut(s)	9
MluCI	AATT	7 cut(s)	79, 179, 194, 247, 399, 477, 774
MluI	ACGCGT	1 cut(s)	72
MlyI	GAGTC	2 cut(s)	95, 597
MmeI	TCCRAC	1 cut(s)	197
MnlI	CCTC	4 cut(s)	432, 658, 834, 861
Mph1103I	ATGCAT	2 cut(s)	716, 736
MroNI	GCCGGC	1 cut(s)	291
MroXI	GAANNNNTTC	1 cut(s)	233
MseI	TTAA	1 cut(s)	459
MslI	CAYNNNNRTG	1 cut(s)	719
MspI	CCGG	2 cut(s)	206, 292
MspR9I	CCNGG	1 cut(s)	173
MunI	CAATTG	3 cut(s)	79, 179, 194
MvaI	CCWGG	1 cut(s)	173
MvnI	CGCG	2 cut(s)	74, 861
MwoI	GCNNNNNNNGC	8 cut(s)	21, 24, 53, 167, 269, 307, 343, 856
NaeI	GCCGGC	1 cut(s)	293
NdeI	CATATG	1 cut(s)	686
NdeII	GATC	2 cut(s)	751, 864
NgoMIV	GCCGGC	1 cut(s)	291
NlaIII	CATG	2 cut(s)	92, 699
NmuCI	GTSAC	1 cut(s)	676
NsiI	ATGCAT	2 cut(s)	716, 736
NspI	RCATGY	1 cut(s)	699
PaqCI	CACCTGC	1 cut(s)	545
PciSI	GCTCTTC	1 cut(s)	147
PcsI	WCGNNNNNNNCGW	1 cut(s)	162
PdiI	GCCGGC	1 cut(s)	293
PdmI	GAANNNNTTC	1 cut(s)	233
PfeI	GAWTC	3 cut(s)	184, 635, 766
PflMI	CCANNNNNTGG	1 cut(s)	84
PkrI	GCNGC	9 cut(s)	14, 17, 26, 274, 309, 574, 621, 660, 748
PleI	GAGTC	2 cut(s)	95, 597
PmaCI	CACGTG	1 cut(s)	416
PmlI	CACGTG	1 cut(s)	416
PpsI	GAGTC	2 cut(s)	95, 597
Ppu21I	YACGTR	1 cut(s)	416
PshBI	ATTAAT	1 cut(s)	459
Psp6I	CCWGG	1 cut(s)	171
PspCI	CACGTG	1 cut(s)	416
PspGI	CCWGG	1 cut(s)	171
PspPI	GGNCC	2 cut(s)	219, 826
PstI	CTGCAG	1 cut(s)	663
PstNI	CAGNNNCTG	1 cut(s)	307
PsuI	RGATCY	1 cut(s)	751
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
RseI	CAYNNNNRTG	1 cut(s)	719
SapI	GCTCTTC	1 cut(s)	147
SaqAI	TTAA	1 cut(s)	459
SatI	GCNGC	9 cut(s)	13, 16, 25, 273, 308, 573, 620, 659, 747
Sau3AI	GATC	2 cut(s)	751, 864
Sau96I	GGNCC	2 cut(s)	219, 826
SchI	GAGTC	2 cut(s)	95, 597
ScrFI	CCNGG	1 cut(s)	173
SduI	GDGCHC	1 cut(s)	9
SfaNI	GCATC	2 cut(s)	319, 701
SfcI	CTRYAG	3 cut(s)	426, 630, 659
SinI	GGWCC	2 cut(s)	219, 826
SmiMI	CAYNNNNRTG	1 cut(s)	719
Sse9I	AATT	7 cut(s)	79, 179, 194, 247, 399, 477, 774
SsiI	CCGC	7 cut(s)	12, 15, 18, 47, 289, 597, 861
StyD4I	CCNGG	1 cut(s)	171
TaaI	ACNGT	3 cut(s)	122, 152, 215
TaiI	ACGT	3 cut(s)	96, 418, 652
TaqI	TCGA	1 cut(s)	268
TasI	AATT	7 cut(s)	79, 179, 194, 247, 399, 477, 774
TauI	GCSGC	2 cut(s)	15, 18
TfiI	GAWTC	3 cut(s)	184, 635, 766
Tru1I	TTAA	1 cut(s)	459
Tru9I	TTAA	1 cut(s)	459
TscAI	CASTG	1 cut(s)	282
TseFI	GTSAC	1 cut(s)	676
TseI	GCWGC	7 cut(s)	24, 272, 307, 572, 619, 658, 746
Tsp45I	GTSAC	1 cut(s)	676
TspDTI	ATGAA	1 cut(s)	823
TspRI	CASTG	1 cut(s)	282
Van91I	CCANNNNNTGG	1 cut(s)	84
VpaK11BI	GGWCC	2 cut(s)	219, 826
VspI	ATTAAT	1 cut(s)	459
XapI	RAATTY	1 cut(s)	399
XceI	RCATGY	1 cut(s)	699
XcmI	CCANNNNNNNNNTGG	1 cut(s)	169
XmiI	GTMKAC	1 cut(s)	190
XmnI	GAANNNNTTC	1 cut(s)	233
ZraI	GACGTC	1 cut(s)	94
Zsp2I	ATGCAT	2 cut(s)	716, 736

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.