Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0006559

Physical Location & Seq

Genomic Coordinates Reverse (-)

615301 .. 620134

Gene Structure 4834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1009600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGCGCGTGGCGGAGGCGGCGGCGGCGGCGGCGTCGGGGTGGTGGAGTCGGCGGTGATAGCTTACAACCTGGGAGAGGCATCGAGTTGGTGGCACAACATCAATGCCTCCTCTATTTGGCAAGACCGCATATTTCATGCCCTCGCTATTCTCTACGGTCTCGTCGCCGTCGTTGCCCTGGTTCAATTGATTCGGATACAATTGAGAGTGCCGGAGTACGGTTGGACCACACAGAAAGTCTTCCACTTTCTTAATTTCGTTGTCAATGGAGTTCGATCAGCTGTGTTTGTTTTCCGCCGGCAAGTGCAGAATCTGCATCCGGAGATTGTCAAACATATCTTGCTTGATATGCCGAGTCTTGCTTTCTTCACAACCTATGCACTCTTGGTTCTGTTCTGGGCCGAAATTTACTATCAGGCACGTGCTGTTTCTACAGATGGACTGAGGCCAAGCTTCTTGACTATCAATGCTGTGGTTTATGTGATTCAGATTGCTATGTGGCTGATATTGTGGTGGAAGCCTATCCCAGTTCTCTTCATCTTATCTAAGATGTTCTTTGCAGGTGTGTCCTTATTTGCAGCGCTTGGGTTTCTTCTATATGGTGGAAGACTCTTCTTGATGTTGCAGAGATTTCCTGTAGAATCAAAGGGACGACGTAAGAAGCTGCAGGAGGTTGGTTATGTGACAACCATATGTTTTACATGTTTCCTTGTCAGATGTGTAATGATGTGCTTCAATGCATTCGATAAAGCTGCAAACCTTGATGTTTTGAATCACCCGGTTCTAAACTTCATATATTACCTGTTGGTGGAGATATTGCCTTCTTCTTTGGTCCTTTTCATTTTGAGGAAGTTGCCTCCAAAGCGTGGGATCACACAATATCATCCCATTCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0008150 GO:0009705 GO:0016020 GO:0016032 GO:0019058 GO:0019079 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046786 GO:0051704 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1084

Protein Analysis

299

Amino Acids

33.87

Weight (kDa)

9.87

Isoelectric Point (pI)

45.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
THH1_TOM1-3_dom	PF06454	27 - 298	6.2e-149	THH1/TOM1/TOM3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14530 AT1G14530 AT2G02180
fragaria_vesca	FvH4_4g36360
malus_domestica	MD13G1009600.v1.1 MD16G1008000.v1.1
prunus_persica	Prupe.1G342900_v2.0.a1
pyrus_communis	pycom13g00820 pycom16g00780
rosa_chinensis	RchiOBHm_Chr4g0446101 RchiOBHm_Chr5g0037351
rosa_laevigata	RLG00000005692 RLG00000033776
rosa_multiflora	Rmu_sc0007511.1_g000008
rosa_roxburghii	Rroxscaffold_5G00386500
rosa_rugosa	Rorug04G0367900 Rorug05G0164300
rosa_samantha	Rh4AG429400 Rh4BG438900 Rh4CG456200 Rh5AG253900 Rh5BG256000 Rh5CG289100 Rh5DG264400
rosa_wichuraiana	Rw4G036690 Rw5G023510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	551
Acc36I	ACCTGC	1 cut(s)	551
AccB7I	CCANNNNNTGG	1 cut(s)	866
AccII	CGCG	1 cut(s)	7
AccIII	TCCGGA	1 cut(s)	319
AciI	CCGC	9 cut(s)	12, 18, 21, 24, 27, 30, 53, 127, 295
AclWI	GGATC	1 cut(s)	878
AcsI	RAATTY	1 cut(s)	405
AcvI	CACGTG	1 cut(s)	422
AcyI	GRCGYC	1 cut(s)	33
AfaI	GTAC	1 cut(s)	218
AfeI	AGCGCT	1 cut(s)	582
AfiI	CCNNNNNNNGG	5 cut(s)	76, 117, 218, 808, 866
AflIII	ACRYGT	1 cut(s)	701
AgsI	TTSAA	3 cut(s)	185, 736, 772
AjnI	CCWGG	2 cut(s)	69, 177
AluBI	AGCT	5 cut(s)	62, 281, 453, 664, 752
AluI	AGCT	5 cut(s)	62, 281, 453, 664, 752
Alw26I	GTCTC	1 cut(s)	164
AlwI	GGATC	1 cut(s)	878
AlwNI	CAGNNNCTG	1 cut(s)	313
Aor13HI	TCCGGA	1 cut(s)	319
Aor51HI	AGCGCT	1 cut(s)	582
AoxI	GGCC	2 cut(s)	399, 446
ApeKI	GCWGC	3 cut(s)	578, 664, 752
ApoI	RAATTY	1 cut(s)	405
Asp700I	GAANNNNTTC	1 cut(s)	239
AspLEI	GCGC	2 cut(s)	7, 583
AspS9I	GGNCC	3 cut(s)	225, 399, 832
AsuC2I	CCSGG	1 cut(s)	779
AsuHPI	GGTGA	2 cut(s)	67, 767
AvaII	GGWCC	2 cut(s)	225, 832
BbrPI	CACGTG	1 cut(s)	422
BbsI	GAAGAC	2 cut(s)	232, 613
BbvI	GCAGC	3 cut(s)	590, 651, 739
BccI	CCATC	1 cut(s)	431
BceAI	ACGGC	1 cut(s)	152
BcgI	CGANNNNNNTGC	2 cut(s)	734, 768
BciT130I	CCWGG	2 cut(s)	71, 179
BciVI	GTATCC	1 cut(s)	189
BcnI	CCSGG	1 cut(s)	779
BcoDI	GTCTC	1 cut(s)	164
BfmI	CTRYAG	3 cut(s)	432, 636, 665
BfoI	RGCGCY	1 cut(s)	584
BfuAI	ACCTGC	1 cut(s)	551
BfuI	GTATCC	1 cut(s)	189
BisI	GCNGC	8 cut(s)	19, 22, 25, 28, 31, 579, 665, 753
BlsI	GCNGC	8 cut(s)	20, 23, 26, 29, 32, 580, 666, 754
Bme1390I	CCNGG	3 cut(s)	71, 179, 779
Bme18I	GGWCC	2 cut(s)	225, 832
BmgT120I	GGNCC	3 cut(s)	225, 399, 832
BmrFI	CCNGG	3 cut(s)	71, 179, 779
BmrI	ACTGGG	1 cut(s)	521
BmsI	GCATC	2 cut(s)	89, 325
BmuI	ACTGGG	1 cut(s)	521
BpiI	GAAGAC	2 cut(s)	232, 613
BpuMI	CCSGG	1 cut(s)	779
BsaAI	YACGTR	1 cut(s)	422
BsaHI	GRCGYC	1 cut(s)	33
BsaI	GGTCTC	1 cut(s)	164
BsaJI	CCNNGG	2 cut(s)	70, 177
BsaWI	WCCGGW	1 cut(s)	319
Bsc4I	CCNNNNNNNGG	5 cut(s)	76, 117, 218, 808, 866
Bse118I	RCCGGY	1 cut(s)	297
Bse1I	ACTGG	1 cut(s)	527
BseAI	TCCGGA	1 cut(s)	319
BseBI	CCWGG	2 cut(s)	71, 179
BseDI	CCNNGG	2 cut(s)	70, 177
BseGI	GGATG	2 cut(s)	316, 883
BseLI	CCNNNNNNNGG	5 cut(s)	76, 117, 218, 808, 866
BseMII	CTCAG	1 cut(s)	434
BseNI	ACTGG	1 cut(s)	527
BseRI	GAGGAG	1 cut(s)	100
BseXI	GCAGC	3 cut(s)	590, 651, 739
BsgI	GTGCAG	1 cut(s)	326
Bsh1236I	CGCG	1 cut(s)	7
BshFI	GGCC	2 cut(s)	401, 448
BsiSI	CCGG	4 cut(s)	212, 298, 320, 779
BslFI	GGGAC	1 cut(s)	663
BslI	CCNNNNNNNGG	5 cut(s)	76, 117, 218, 808, 866
BsmAI	GTCTC	1 cut(s)	164
BsmFI	GGGAC	1 cut(s)	663
BsmI	GAATGC	1 cut(s)	740
BsnI	GGCC	2 cut(s)	401, 448
Bso31I	GGTCTC	1 cut(s)	164
Bsp13I	TCCGGA	1 cut(s)	319
Bsp143I	GATC	2 cut(s)	275, 870
BspACI	CCGC	9 cut(s)	12, 18, 21, 24, 27, 30, 53, 127, 295
BspANI	GGCC	2 cut(s)	401, 448
BspCNI	CTCAG	1 cut(s)	435
BspEI	TCCGGA	1 cut(s)	319
BspFNI	CGCG	1 cut(s)	7
BspMAI	CTGCAG	1 cut(s)	669
BspMI	ACCTGC	1 cut(s)	551
BspPI	GGATC	1 cut(s)	878
BspTNI	GGTCTC	1 cut(s)	164
BsrFI	RCCGGY	1 cut(s)	297
BsrI	ACTGG	1 cut(s)	527
BssAI	RCCGGY	1 cut(s)	297
BssECI	CCNNGG	2 cut(s)	70, 177
BssMI	GATC	2 cut(s)	275, 870
BssNI	GRCGYC	1 cut(s)	33
Bst2UI	CCWGG	2 cut(s)	71, 179
Bst4CI	ACNGT	2 cut(s)	158, 221
Bst6I	CTCTTC	2 cut(s)	539, 617
BstACI	GRCGYC	1 cut(s)	33
BstAPI	GCANNNNNTGC	1 cut(s)	313
BstBAI	YACGTR	1 cut(s)	422
BstC8I	GCNNGC	1 cut(s)	299
BstDEI	CTNAG	2 cut(s)	443, 546
BstENI	CCTNNNNNAGG	1 cut(s)	74
BstF5I	GGATG	2 cut(s)	316, 883
BstFNI	CGCG	1 cut(s)	7
BstH2I	RGCGCY	1 cut(s)	584
BstHHI	GCGC	2 cut(s)	7, 583
BstKTI	GATC	2 cut(s)	278, 873
BstMAI	GTCTC	1 cut(s)	164
BstMBI	GATC	2 cut(s)	275, 870
BstMWI	GCNNNNNNNGC	9 cut(s)	18, 24, 27, 30, 59, 173, 313, 349, 862
BstNI	CCWGG	2 cut(s)	71, 179
BstNSI	RCATGY	1 cut(s)	705
BstSCI	CCNGG	3 cut(s)	69, 177, 777
BstSFI	CTRYAG	3 cut(s)	432, 636, 665
BstUI	CGCG	1 cut(s)	7
BstV1I	GCAGC	3 cut(s)	590, 651, 739
BstV2I	GAAGAC	2 cut(s)	232, 613
BsuI	GTATCC	1 cut(s)	189
BsuRI	GGCC	2 cut(s)	401, 448
BtsCI	GGATG	2 cut(s)	316, 883
BveI	ACCTGC	1 cut(s)	551
Cac8I	GCNNGC	1 cut(s)	299
CaiI	CAGNNNCTG	1 cut(s)	313
CfoI	GCGC	2 cut(s)	7, 583
Cfr10I	RCCGGY	1 cut(s)	297
Cfr13I	GGNCC	3 cut(s)	225, 399, 832
CseI	GACGC	1 cut(s)	22
Csp6I	GTAC	1 cut(s)	217
CviAII	CATG	2 cut(s)	137, 702
CviJI	RGCY	9 cut(s)	62, 281, 401, 448, 453, 502, 520, 664, 752
CviKI_1	RGCY	9 cut(s)	62, 281, 401, 448, 453, 502, 520, 664, 752
CviQI	GTAC	1 cut(s)	217
DdeI	CTNAG	2 cut(s)	443, 546
DpnI	GATC	2 cut(s)	277, 872
DpnII	GATC	2 cut(s)	275, 870
Eam1104I	CTCTTC	2 cut(s)	539, 617
EarI	CTCTTC	2 cut(s)	539, 617
EciI	GGCGGA	2 cut(s)	27, 284
Eco31I	GGTCTC	1 cut(s)	164
Eco47I	GGWCC	2 cut(s)	225, 832
Eco47III	AGCGCT	1 cut(s)	582
Eco72I	CACGTG	1 cut(s)	422
EcoNI	CCTNNNNNAGG	1 cut(s)	74
EcoRII	CCWGG	2 cut(s)	69, 177
EcoT22I	ATGCAT	1 cut(s)	742
FaeI	CATG	2 cut(s)	140, 705
FalI	AAGNNNNNCTT	2 cut(s)	539, 571
FaqI	GGGAC	1 cut(s)	663
FatI	CATG	2 cut(s)	136, 701
FauNDI	CATATG	1 cut(s)	692
Fnu4HI	GCNGC	8 cut(s)	19, 22, 25, 28, 31, 579, 665, 753
FokI	GGATG	2 cut(s)	303, 870
Fsp4HI	GCNGC	8 cut(s)	19, 22, 25, 28, 31, 579, 665, 753
GlaI	GCGC	2 cut(s)	6, 582
GluI	GCNGC	8 cut(s)	19, 22, 25, 28, 31, 579, 665, 753
HaeII	RGCGCY	1 cut(s)	584
HaeIII	GGCC	2 cut(s)	401, 448
HapII	CCGG	4 cut(s)	212, 298, 320, 779
HgaI	GACGC	1 cut(s)	22
HhaI	GCGC	2 cut(s)	7, 583
Hin1I	GRCGYC	1 cut(s)	33
Hin1II	CATG	2 cut(s)	140, 705
Hin6I	GCGC	2 cut(s)	5, 581
HinP1I	GCGC	2 cut(s)	5, 581
HindIII	AAGCTT	1 cut(s)	451
HinfI	GANTC	8 cut(s)	47, 190, 310, 355, 484, 609, 641, 772
HpaII	CCGG	4 cut(s)	212, 298, 320, 779
HphI	GGTGA	2 cut(s)	67, 767
Hpy188I	TCNGA	3 cut(s)	195, 489, 716
Hpy188III	TCNNGA	3 cut(s)	320, 457, 616
Hpy99I	CGWCG	4 cut(s)	38, 167, 173, 657
HpyAV	CCTTC	1 cut(s)	831
HpyCH4III	ACNGT	2 cut(s)	158, 221
HpyCH4IV	ACGT	2 cut(s)	421, 655
HpyCH4V	TGCA	9 cut(s)	307, 316, 380, 560, 578, 625, 667, 740, 755
HpyF10VI	GCNNNNNNNGC	9 cut(s)	18, 24, 27, 30, 59, 173, 313, 349, 862
HpyF3I	CTNAG	2 cut(s)	443, 546
HpySE526I	ACGT	2 cut(s)	421, 655
Hsp92I	GRCGYC	1 cut(s)	33
Hsp92II	CATG	2 cut(s)	140, 705
HspAI	GCGC	2 cut(s)	5, 581
Kpn2I	TCCGGA	1 cut(s)	319
KroI	GCCGGC	1 cut(s)	297
KroNI	GCCGGC	1 cut(s)	299
Kzo9I	GATC	2 cut(s)	275, 870
Lsp1109I	GCAGC	3 cut(s)	590, 651, 739
LweI	GCATC	2 cut(s)	89, 325
MaeII	ACGT	2 cut(s)	421, 655
MaeIII	GTNAC	1 cut(s)	682
MalI	GATC	2 cut(s)	277, 872
MboI	GATC	2 cut(s)	275, 870
MboII	GAAGA	7 cut(s)	232, 358, 526, 584, 604, 618, 816
MfeI	CAATTG	2 cut(s)	185, 200
MluCI	AATT	4 cut(s)	185, 200, 253, 405
MlyI	GAGTC	3 cut(s)	56, 364, 603
MmeI	TCCRAC	1 cut(s)	203
MnlI	CCTC	9 cut(s)	8, 70, 118, 121, 152, 438, 664, 840, 867
Mph1103I	ATGCAT	1 cut(s)	742
MroI	TCCGGA	1 cut(s)	319
MroNI	GCCGGC	1 cut(s)	297
MroXI	GAANNNNTTC	1 cut(s)	239
MseI	TTAA	1 cut(s)	252
MspA1I	CMGCKG	1 cut(s)	281
MspI	CCGG	4 cut(s)	212, 298, 320, 779
MspR9I	CCNGG	3 cut(s)	71, 179, 779
MunI	CAATTG	2 cut(s)	185, 200
Mva1269I	GAATGC	1 cut(s)	740
MvaI	CCWGG	2 cut(s)	71, 179
MvnI	CGCG	1 cut(s)	7
MwoI	GCNNNNNNNGC	9 cut(s)	18, 24, 27, 30, 59, 173, 313, 349, 862
NaeI	GCCGGC	1 cut(s)	299
NciI	CCSGG	1 cut(s)	779
NdeI	CATATG	1 cut(s)	692
NdeII	GATC	2 cut(s)	275, 870
NgoMIV	GCCGGC	1 cut(s)	297
NlaIII	CATG	2 cut(s)	140, 705
NmeAIII	GCCGAG	1 cut(s)	378
NmuCI	GTSAC	1 cut(s)	682
NsiI	ATGCAT	1 cut(s)	742
NspI	RCATGY	1 cut(s)	705
PaqCI	CACCTGC	1 cut(s)	551
PciI	ACATGT	1 cut(s)	701
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PctI	GAATGC	1 cut(s)	740
PdiI	GCCGGC	1 cut(s)	299
PdmI	GAANNNNTTC	1 cut(s)	239
PfeI	GAWTC	5 cut(s)	190, 310, 484, 641, 772
PflMI	CCANNNNNTGG	1 cut(s)	866
PkrI	GCNGC	8 cut(s)	20, 23, 26, 29, 32, 580, 666, 754
PleI	GAGTC	3 cut(s)	55, 363, 603
PmaCI	CACGTG	1 cut(s)	422
PmlI	CACGTG	1 cut(s)	422
PpsI	GAGTC	3 cut(s)	55, 363, 603
Ppu21I	YACGTR	1 cut(s)	422
PscI	ACATGT	1 cut(s)	701
Psp6I	CCWGG	2 cut(s)	69, 177
PspCI	CACGTG	1 cut(s)	422
PspGI	CCWGG	2 cut(s)	69, 177
PspPI	GGNCC	3 cut(s)	225, 399, 832
PstI	CTGCAG	1 cut(s)	669
PstNI	CAGNNNCTG	1 cut(s)	313
PvuII	CAGCTG	1 cut(s)	281
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
SaqAI	TTAA	1 cut(s)	252
SatI	GCNGC	8 cut(s)	19, 22, 25, 28, 31, 579, 665, 753
Sau3AI	GATC	2 cut(s)	275, 870
Sau96I	GGNCC	3 cut(s)	225, 399, 832
SchI	GAGTC	3 cut(s)	56, 364, 603
ScrFI	CCNGG	3 cut(s)	71, 179, 779
SfaNI	GCATC	2 cut(s)	89, 325
SfcI	CTRYAG	3 cut(s)	432, 636, 665
SinI	GGWCC	2 cut(s)	225, 832
Sse9I	AATT	4 cut(s)	185, 200, 253, 405
SsiI	CCGC	9 cut(s)	12, 18, 21, 24, 27, 30, 53, 127, 295
StyD4I	CCNGG	3 cut(s)	69, 177, 777
TaaI	ACNGT	2 cut(s)	158, 221
TaiI	ACGT	2 cut(s)	424, 658
TaqI	TCGA	3 cut(s)	83, 274, 744
TasI	AATT	4 cut(s)	185, 200, 253, 405
TauI	GCSGC	5 cut(s)	21, 24, 27, 30, 33
TfiI	GAWTC	5 cut(s)	190, 310, 484, 641, 772
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TseFI	GTSAC	1 cut(s)	682
TseI	GCWGC	3 cut(s)	578, 664, 752
Tsp45I	GTSAC	1 cut(s)	682
TspDTI	ATGAA	4 cut(s)	125, 526, 781, 829
Van91I	CCANNNNNTGG	1 cut(s)	866
VpaK11BI	GGWCC	2 cut(s)	225, 832
XagI	CCTNNNNNAGG	1 cut(s)	74
XapI	RAATTY	1 cut(s)	405
XceI	RCATGY	1 cut(s)	705
XmnI	GAANNNNTTC	1 cut(s)	239
Zsp2I	ATGCAT	1 cut(s)	742

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.