Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006559

Physical Location & Seq

Genomic Coordinates Forward (+)

560695 .. 563367

Gene Structure 2673 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G02180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGAGAATCGGCGGCGTCGAGGTTACGAAATTTGCGTCGGAGATGATGTCGTCGTCGTCTTCGTCGGCGGTGGAGATGTTGAATCTCAAAGAAGCTTCGAATTGGTGGTCAGACGTAAACGAATCTCCGATTTGGCAGGATCGTATCTTCCATGTTCTCGCTGTTCTCTACGGAATCGTTTCCCTCGTTGCTGTGATTCAACTTGTGAGAATACAATTGAGAGTTCCTGAATATGGTTGGACGACGCAAAAGGTCTTTCACTTTCTCAATTTCGTTGTTAATGGAGTTCGTGCTGTGGTGTTTGTCTTCAGGCGAAATGTTCAGTTTATGCAACCAGAGATTCTGCAACATATCTTGCTTGATATTCCAAGTCTTGCTTTCTTCACCACCTATGCTCTTCTGGTTCTTTTCTGGGCTGAAATTTATTATCAGGCGCGTGCAGTATCGACTGATGGACTCAGGCCAAGCTTCTTCACAATTAATGCAGTTGTATATGTAGTTCAGATTGCTCTATGGTTGGTTTTGTGGTGGAAGCCTGTTCGAGTTATGGTAATCCTATCTAAGATGTTCTTTGCAGGTGTTTCATTGTTCGCTGCCCTTGGATTTTTACTTTATGGTGGAAGGCTTTTCCTAATGTTGCAACGGTTTCCAGTAGAATCTAAAGGGCGGCGCAAAAAGCTGCAAGAGGTTGGTTACGTGACAACCATATGCTTTACGTGTTTCCTCATCAGATGTATCATGATGTGCTTTGCTGCTTTCGATGAGGGGGCAAACCTTGATGTGTTAGATCACCCCATCCTTAACTTCATATATTACCTGTTGGTAGAGATATTACCCTCCTCTCTGGTCCTCTTCATCTTGAGAAAGCTACCACCAAAACGAGGCATTACACAATACCATCAGATTCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0008150 GO:0009705 GO:0016020 GO:0016032 GO:0019058 GO:0019079 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046786 GO:0051704 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1084

Protein Analysis

303

Amino Acids

34.99

Weight (kDa)

9.49

Isoelectric Point (pI)

42.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
THH1_TOM1-3_dom	PF06454	32 - 303	7.9e-149	THH1/TOM1/TOM3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14530 AT1G14530 AT2G02180
fragaria_vesca	FvH4_4g36360
malus_domestica	MD13G1009600.v1.1 MD16G1008000.v1.1
prunus_persica	Prupe.1G342900_v2.0.a1
pyrus_communis	pycom13g00820 pycom16g00780
rosa_chinensis	RchiOBHm_Chr4g0446101 RchiOBHm_Chr5g0037351
rosa_laevigata	RLG00000005692 RLG00000033776
rosa_multiflora	Rmu_sc0007511.1_g000008
rosa_roxburghii	Rroxscaffold_5G00386500
rosa_rugosa	Rorug04G0367900 Rorug05G0164300
rosa_samantha	Rh4AG429400 Rh4BG438900 Rh4CG456200 Rh5AG253900 Rh5BG256000 Rh5CG289100 Rh5DG264400
rosa_wichuraiana	Rw4G036690 Rw5G023510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	566
Acc36I	ACCTGC	1 cut(s)	566
AccII	CGCG	1 cut(s)	436
AciI	CCGC	3 cut(s)	12, 68, 667
AclWI	GGATC	1 cut(s)	147
AcsI	RAATTY	2 cut(s)	29, 420
AcuI	CTGAAG	1 cut(s)	292
AcyI	GRCGYC	1 cut(s)	15
AfiI	CCNNNNNNNGG	2 cut(s)	233, 881
AflIII	ACRYGT	1 cut(s)	716
AgsI	TTSAA	2 cut(s)	82, 200
AluBI	AGCT	4 cut(s)	95, 468, 679, 868
AluI	AGCT	4 cut(s)	95, 468, 679, 868
AlwI	GGATC	1 cut(s)	147
AoxI	GGCC	1 cut(s)	461
ApeKI	GCWGC	3 cut(s)	593, 679, 752
ApoI	RAATTY	2 cut(s)	29, 420
ArsI	GACNNNNNNTTYG	4 cut(s)	20, 52, 92, 124
AseI	ATTAAT	1 cut(s)	480
Asp700I	GAANNNNTTC	1 cut(s)	178
AspLEI	GCGC	2 cut(s)	436, 672
AspS9I	GGNCC	1 cut(s)	847
AsuHPI	GGTGA	2 cut(s)	376, 782
AsuII	TTCGAA	1 cut(s)	98
AvaII	GGWCC	1 cut(s)	847
BbsI	GAAGAC	2 cut(s)	51, 298
BbvI	GCAGC	3 cut(s)	580, 666, 739
BccI	CCATC	3 cut(s)	446, 803, 906
BfuAI	ACCTGC	1 cut(s)	566
BisI	GCNGC	5 cut(s)	13, 594, 668, 680, 753
BlsI	GCNGC	5 cut(s)	14, 595, 669, 681, 754
Bme18I	GGWCC	1 cut(s)	847
BmgT120I	GGNCC	1 cut(s)	847
BpiI	GAAGAC	2 cut(s)	51, 298
Bpu14I	TTCGAA	1 cut(s)	98
BpuEI	CTTGAG	1 cut(s)	880
BsaAI	YACGTR	2 cut(s)	697, 717
BsaHI	GRCGYC	1 cut(s)	15
BsaJI	CCNNGG	1 cut(s)	598
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bsc4I	CCNNNNNNNGG	2 cut(s)	233, 881
Bse1I	ACTGG	1 cut(s)	650
BseDI	CCNNGG	1 cut(s)	598
BseGI	GGATG	1 cut(s)	795
BseLI	CCNNNNNNNGG	2 cut(s)	233, 881
BseMII	CTCAG	1 cut(s)	472
BseNI	ACTGG	1 cut(s)	650
BseRI	GAGGAG	1 cut(s)	829
BseXI	GCAGC	3 cut(s)	580, 666, 739
BsgI	GTGCAG	1 cut(s)	459
Bsh1236I	CGCG	1 cut(s)	436
BshFI	GGCC	1 cut(s)	463
BslI	CCNNNNNNNGG	2 cut(s)	233, 881
BsnI	GGCC	1 cut(s)	463
Bsp119I	TTCGAA	1 cut(s)	98
Bsp143I	GATC	2 cut(s)	139, 787
BspACI	CCGC	3 cut(s)	12, 68, 667
BspANI	GGCC	1 cut(s)	463
BspCNI	CTCAG	1 cut(s)	471
BspFNI	CGCG	1 cut(s)	436
BspHI	TCATGA	1 cut(s)	738
BspMI	ACCTGC	1 cut(s)	566
BspPI	GGATC	1 cut(s)	147
BspQI	GCTCTTC	1 cut(s)	402
BspT104I	TTCGAA	1 cut(s)	98
BsrI	ACTGG	1 cut(s)	650
BssECI	CCNNGG	1 cut(s)	598
BssMI	GATC	2 cut(s)	139, 787
BssNI	GRCGYC	1 cut(s)	15
BssT1I	CCWWGG	1 cut(s)	598
Bst4CI	ACNGT	1 cut(s)	645
Bst6I	CTCTTC	2 cut(s)	402, 857
BstACI	GRCGYC	1 cut(s)	15
BstBAI	YACGTR	2 cut(s)	697, 717
BstBI	TTCGAA	1 cut(s)	98
BstC8I	GCNNGC	1 cut(s)	438
BstDEI	CTNAG	2 cut(s)	458, 561
BstF5I	GGATG	1 cut(s)	795
BstFNI	CGCG	1 cut(s)	436
BstHHI	GCGC	2 cut(s)	436, 672
BstKTI	GATC	2 cut(s)	142, 790
BstMBI	GATC	2 cut(s)	139, 787
BstMWI	GCNNNNNNNGC	1 cut(s)	676
BstUI	CGCG	1 cut(s)	436
BstV1I	GCAGC	3 cut(s)	580, 666, 739
BstV2I	GAAGAC	2 cut(s)	51, 298
BsuRI	GGCC	1 cut(s)	463
BtsCI	GGATG	1 cut(s)	795
BveI	ACCTGC	1 cut(s)	566
Cac8I	GCNNGC	1 cut(s)	438
CciI	TCATGA	1 cut(s)	738
CfoI	GCGC	2 cut(s)	436, 672
Cfr13I	GGNCC	1 cut(s)	847
CseI	GACGC	3 cut(s)	4, 24, 253
CviAII	CATG	2 cut(s)	152, 739
CviJI	RGCY	8 cut(s)	95, 416, 463, 468, 535, 625, 679, 868
CviKI_1	RGCY	8 cut(s)	95, 416, 463, 468, 535, 625, 679, 868
DdeI	CTNAG	2 cut(s)	458, 561
DpnI	GATC	2 cut(s)	141, 789
DpnII	GATC	2 cut(s)	139, 787
Eam1104I	CTCTTC	2 cut(s)	402, 857
EarI	CTCTTC	2 cut(s)	402, 857
Eco130I	CCWWGG	1 cut(s)	598
Eco47I	GGWCC	1 cut(s)	847
Eco57I	CTGAAG	1 cut(s)	292
EcoT14I	CCWWGG	1 cut(s)	598
ErhI	CCWWGG	1 cut(s)	598
FaeI	CATG	2 cut(s)	155, 742
FalI	AAGNNNNNCTT	4 cut(s)	361, 393, 554, 586
FatI	CATG	2 cut(s)	151, 738
FauNDI	CATATG	1 cut(s)	707
Fnu4HI	GCNGC	5 cut(s)	13, 594, 668, 680, 753
FokI	GGATG	1 cut(s)	782
Fsp4HI	GCNGC	5 cut(s)	13, 594, 668, 680, 753
GlaI	GCGC	2 cut(s)	435, 671
GluI	GCNGC	5 cut(s)	13, 594, 668, 680, 753
HaeIII	GGCC	1 cut(s)	463
HgaI	GACGC	3 cut(s)	4, 24, 253
HhaI	GCGC	2 cut(s)	436, 672
Hin1I	GRCGYC	1 cut(s)	15
Hin1II	CATG	2 cut(s)	155, 742
Hin6I	GCGC	2 cut(s)	434, 670
HinP1I	GCGC	2 cut(s)	434, 670
HindIII	AAGCTT	2 cut(s)	93, 466
HinfI	GANTC	9 cut(s)	6, 82, 122, 174, 196, 340, 456, 656, 904
HphI	GGTGA	2 cut(s)	376, 782
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	6 cut(s)	40, 112, 129, 504, 731, 903
Hpy188III	TCNNGA	3 cut(s)	227, 739, 859
Hpy8I	GTNNAC	1 cut(s)	118
Hpy99I	CGWCG	6 cut(s)	20, 40, 55, 58, 67, 247
HpyAV	CCTTC	1 cut(s)	615
HpyCH4III	ACNGT	1 cut(s)	645
HpyCH4IV	ACGT	3 cut(s)	114, 696, 716
HpyCH4V	TGCA	7 cut(s)	331, 346, 440, 485, 575, 640, 682
HpyF10VI	GCNNNNNNNGC	1 cut(s)	676
HpyF3I	CTNAG	2 cut(s)	458, 561
HpySE526I	ACGT	3 cut(s)	114, 696, 716
Hsp92I	GRCGYC	1 cut(s)	15
Hsp92II	CATG	2 cut(s)	155, 742
HspAI	GCGC	2 cut(s)	434, 670
Kzo9I	GATC	2 cut(s)	139, 787
LguI	GCTCTTC	1 cut(s)	402
Lsp1109I	GCAGC	3 cut(s)	580, 666, 739
MaeII	ACGT	3 cut(s)	114, 696, 716
MaeIII	GTNAC	3 cut(s)	22, 692, 697
MalI	GATC	2 cut(s)	141, 789
MboI	GATC	2 cut(s)	139, 787
MboII	GAAGA	7 cut(s)	51, 139, 298, 373, 389, 463, 844
MfeI	CAATTG	1 cut(s)	215
MluCI	AATT	6 cut(s)	29, 100, 215, 268, 420, 477
MlyI	GAGTC	1 cut(s)	450
MmeI	TCCRAC	2 cut(s)	18, 218
MnlI	CCTC	9 cut(s)	13, 194, 679, 734, 757, 847, 850, 860, 875
MroXI	GAANNNNTTC	1 cut(s)	178
MseI	TTAA	3 cut(s)	279, 480, 801
MunI	CAATTG	1 cut(s)	215
MvnI	CGCG	1 cut(s)	436
MwoI	GCNNNNNNNGC	1 cut(s)	676
NdeI	CATATG	1 cut(s)	707
NdeII	GATC	2 cut(s)	139, 787
NlaIII	CATG	2 cut(s)	155, 742
NmuCI	GTSAC	1 cut(s)	697
NspV	TTCGAA	1 cut(s)	98
PagI	TCATGA	1 cut(s)	738
PaqCI	CACCTGC	1 cut(s)	566
PciSI	GCTCTTC	1 cut(s)	402
PcsI	WCGNNNNNNNCGW	4 cut(s)	15, 32, 59, 183
PdmI	GAANNNNTTC	1 cut(s)	178
PfeI	GAWTC	8 cut(s)	6, 82, 122, 174, 196, 340, 656, 904
PkrI	GCNGC	5 cut(s)	14, 595, 669, 681, 754
PleI	GAGTC	1 cut(s)	450
PpsI	GAGTC	1 cut(s)	450
Ppu21I	YACGTR	2 cut(s)	697, 717
PshBI	ATTAAT	1 cut(s)	480
PspPI	GGNCC	1 cut(s)	847
PsrI	GAACNNNNNNTAC	2 cut(s)	483, 515
SapI	GCTCTTC	1 cut(s)	402
SaqAI	TTAA	3 cut(s)	279, 480, 801
SatI	GCNGC	5 cut(s)	13, 594, 668, 680, 753
Sau3AI	GATC	2 cut(s)	139, 787
Sau96I	GGNCC	1 cut(s)	847
SchI	GAGTC	1 cut(s)	450
SfuI	TTCGAA	1 cut(s)	98
SinI	GGWCC	1 cut(s)	847
SmlI	CTYRAG	1 cut(s)	859
SmoI	CTYRAG	1 cut(s)	859
Sse9I	AATT	6 cut(s)	29, 100, 215, 268, 420, 477
SsiI	CCGC	3 cut(s)	12, 68, 667
StyI	CCWWGG	1 cut(s)	598
TaaI	ACNGT	1 cut(s)	645
TaiI	ACGT	3 cut(s)	117, 699, 719
TaqI	TCGA	5 cut(s)	18, 98, 446, 541, 759
TasI	AATT	6 cut(s)	29, 100, 215, 268, 420, 477
TauI	GCSGC	2 cut(s)	15, 670
TfiI	GAWTC	8 cut(s)	6, 82, 122, 174, 196, 340, 656, 904
Tru1I	TTAA	3 cut(s)	279, 480, 801
Tru9I	TTAA	3 cut(s)	279, 480, 801
TseFI	GTSAC	1 cut(s)	697
TseI	GCWGC	3 cut(s)	593, 679, 752
Tsp45I	GTSAC	1 cut(s)	697
TspDTI	ATGAA	3 cut(s)	573, 796, 844
TspGWI	ACGGA	1 cut(s)	186
VpaK11BI	GGWCC	1 cut(s)	847
VspI	ATTAAT	1 cut(s)	480
XapI	RAATTY	2 cut(s)	29, 420
XmnI	GAANNNNTTC	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.