Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0006559

Physical Location & Seq

Genomic Coordinates Forward (+)

68846041 .. 68851391

Gene Structure 5351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG456200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGCGCGCGGCGGCGGCGGCGGTAGCGTGGTGGAGTCGGCGGCGGCGGTGATAGCTTACAATCTGAAAGACTCGTCGAGTTGGTGGCACGACATCAATGCCTCGCAGCTCTGGCAAGACCGAATCTTCCACGGCCTCGCCATTCTCTACGGCCTCGTCGCCGTCGTTGCCCTGGTTCAATTGATCCGGATACAAGTGCGGGTGCCGGAGTACGGCTGGACCACTCAGAAGGTCTTCCACTTTCTCAATTTTGTTGTCAATGCAGTTCGAGCAGCAGTGTTCATTTTCCGCCGGCAAGTACAGAAGCTGCATCCAGAGATTCTCCAACATGTATTGCTTGATATGCCGAGTGTGGCTTTCTTCACTACTTACGCGCTACTGGTTCTGTTCTGGGCAGAAATTTACTATCAGGCGCGTGCTGTTTCTACAGATGGACTGAGGCCGAGCTTCTTTACAATCAATGCTGCCGTTTATGTAATTCAGATATCTATGTGGTTGATATTATGGTGGAAGCCTATCCCAGTCGTGATCATCTTATCTAAAATGTTCTTTGCAGCTGTCTCGTTATTTGCAGCCCTTGGATTTCTTCTGTATGGTGGAAGACTCTTTTTGATGTTGCAGAGATTTCCTGTGGAGTCAAAAGGAAGACGTAAGAAGCTGCAGGAGGTTGGCTACGTGACAACCATATGTTTTACTTGTTTCCTTGTCAGATGCGTAATGATGTGCTTATGTGCATTTGACAAGGCGGCAGACCTTGATGTTTTGAATCACCCAGTTCTAAACTTAATATATTACCTGTTGGTGGAGATATTGCCTTCTTCTTTGGTTCTTTTCATTTTGAGGAAGTTGCCTCCAAAGCGTGGGATCACACAATATCATCCTATTCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0008150 GO:0009705 GO:0016020 GO:0016032 GO:0019058 GO:0019079 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046786 GO:0051704 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1084

Protein Analysis

296

Amino Acids

33.78

Weight (kDa)

9.71

Isoelectric Point (pI)

42.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
THH1_TOM1-3_dom	PF06454	25 - 296	2.7e-148	THH1/TOM1/TOM3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14530 AT1G14530 AT2G02180
fragaria_vesca	FvH4_4g36360
malus_domestica	MD13G1009600.v1.1 MD16G1008000.v1.1
prunus_persica	Prupe.1G342900_v2.0.a1
pyrus_communis	pycom13g00820 pycom16g00780
rosa_chinensis	RchiOBHm_Chr4g0446101 RchiOBHm_Chr5g0037351
rosa_laevigata	RLG00000005692 RLG00000033776
rosa_multiflora	Rmu_sc0007511.1_g000008
rosa_roxburghii	Rroxscaffold_5G00386500
rosa_rugosa	Rorug04G0367900 Rorug05G0164300
rosa_samantha	Rh4AG429400 Rh4BG438900 Rh4CG456200 Rh5AG253900 Rh5BG256000 Rh5CG289100 Rh5DG264400
rosa_wichuraiana	Rw4G036690 Rw5G023510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	202
AccB7I	CCANNNNNTGG	1 cut(s)	860
AccII	CGCG	4 cut(s)	7, 9, 374, 415
AccIII	TCCGGA	1 cut(s)	186
AclWI	GGATC	2 cut(s)	178, 872
AcsI	RAATTY	1 cut(s)	399
AfaI	GTAC	2 cut(s)	212, 300
AfiI	CCNNNNNNNGG	3 cut(s)	212, 802, 860
AflIII	ACRYGT	1 cut(s)	328
AgsI	TTSAA	2 cut(s)	179, 766
AjnI	CCWGG	1 cut(s)	171
AluBI	AGCT	6 cut(s)	56, 109, 307, 447, 557, 658
AluI	AGCT	6 cut(s)	56, 109, 307, 447, 557, 658
Alw26I	GTCTC	1 cut(s)	565
AlwI	GGATC	2 cut(s)	178, 872
AlwNI	CAGNNNCTG	1 cut(s)	307
Aor13HI	TCCGGA	1 cut(s)	186
AoxI	GGCC	3 cut(s)	133, 151, 440
ApeKI	GCWGC	7 cut(s)	106, 272, 307, 464, 554, 572, 658
ApoI	RAATTY	1 cut(s)	399
Asp700I	GAANNNNTTC	1 cut(s)	233
AspLEI	GCGC	4 cut(s)	7, 9, 376, 415
AspS9I	GGNCC	1 cut(s)	219
AsuHPI	GGTGA	2 cut(s)	61, 761
AvaII	GGWCC	1 cut(s)	219
BanI	GGYRCC	1 cut(s)	202
BbsI	GAAGAC	3 cut(s)	226, 607, 652
BbvI	GCAGC	7 cut(s)	118, 284, 294, 451, 566, 584, 645
BccI	CCATC	1 cut(s)	425
BceAI	ACGGC	5 cut(s)	146, 148, 166, 229, 452
BcgI	CGANNNNNNTGC	4 cut(s)	80, 114, 543, 577
BciT130I	CCWGG	1 cut(s)	173
BciVI	GTATCC	1 cut(s)	183
BclI	TGATCA	1 cut(s)	528
BcoDI	GTCTC	1 cut(s)	565
BfmI	CTRYAG	2 cut(s)	426, 659
BfuI	GTATCC	1 cut(s)	183
Bme1390I	CCNGG	1 cut(s)	173
Bme18I	GGWCC	1 cut(s)	219
BmgT120I	GGNCC	1 cut(s)	219
BmiI	GGNNCC	1 cut(s)	204
BmrFI	CCNGG	1 cut(s)	173
BmrI	ACTGGG	2 cut(s)	515, 767
BmsI	GCATC	2 cut(s)	319, 701
BmuI	ACTGGG	2 cut(s)	515, 767
BpiI	GAAGAC	3 cut(s)	226, 607, 652
BsaAI	YACGTR	1 cut(s)	676
BsaJI	CCNNGG	3 cut(s)	130, 171, 577
BsaWI	WCCGGW	1 cut(s)	186
Bsc4I	CCNNNNNNNGG	3 cut(s)	212, 802, 860
Bse118I	RCCGGY	1 cut(s)	291
Bse1I	ACTGG	3 cut(s)	384, 521, 773
BseAI	TCCGGA	1 cut(s)	186
BseBI	CCWGG	1 cut(s)	173
BseDI	CCNNGG	3 cut(s)	130, 171, 577
BseGI	GGATG	2 cut(s)	310, 877
BseLI	CCNNNNNNNGG	3 cut(s)	212, 802, 860
BseMII	CTCAG	2 cut(s)	239, 428
BseNI	ACTGG	3 cut(s)	384, 521, 773
BsePI	GCGCGC	1 cut(s)	5
BseXI	GCAGC	7 cut(s)	118, 284, 294, 451, 566, 584, 645
Bsh1236I	CGCG	4 cut(s)	7, 9, 374, 415
BshFI	GGCC	3 cut(s)	135, 153, 442
BshNI	GGYRCC	1 cut(s)	202
BsiSI	CCGG	3 cut(s)	187, 206, 292
BslI	CCNNNNNNNGG	3 cut(s)	212, 802, 860
BsmAI	GTCTC	1 cut(s)	565
BsnI	GGCC	3 cut(s)	135, 153, 442
Bsp13I	TCCGGA	1 cut(s)	186
Bsp143I	GATC	3 cut(s)	183, 528, 864
BspANI	GGCC	3 cut(s)	135, 153, 442
BspCNI	CTCAG	2 cut(s)	238, 429
BspEI	TCCGGA	1 cut(s)	186
BspFNI	CGCG	4 cut(s)	7, 9, 374, 415
BspLI	GGNNCC	1 cut(s)	204
BspMAI	CTGCAG	1 cut(s)	663
BspPI	GGATC	2 cut(s)	178, 872
BspT107I	GGYRCC	1 cut(s)	202
BsrFI	RCCGGY	1 cut(s)	291
BsrI	ACTGG	3 cut(s)	384, 521, 773
BssAI	RCCGGY	1 cut(s)	291
BssECI	CCNNGG	3 cut(s)	130, 171, 577
BssHII	GCGCGC	1 cut(s)	5
BssMI	GATC	3 cut(s)	183, 528, 864
BssT1I	CCWWGG	1 cut(s)	577
Bst2UI	CCWGG	1 cut(s)	173
BstBAI	YACGTR	1 cut(s)	676
BstC8I	GCNNGC	3 cut(s)	7, 293, 417
BstDEI	CTNAG	2 cut(s)	225, 437
BstDSI	CCRYGG	1 cut(s)	130
BstF5I	GGATG	2 cut(s)	310, 877
BstFNI	CGCG	4 cut(s)	7, 9, 374, 415
BstHHI	GCGC	4 cut(s)	7, 9, 376, 415
BstKTI	GATC	3 cut(s)	186, 531, 867
BstMAI	GTCTC	1 cut(s)	565
BstMBI	GATC	3 cut(s)	183, 528, 864
BstMWI	GCNNNNNNNGC	9 cut(s)	15, 18, 24, 53, 112, 167, 269, 343, 856
BstNI	CCWGG	1 cut(s)	173
BstNSI	RCATGY	1 cut(s)	332
BstSCI	CCNGG	1 cut(s)	171
BstSFI	CTRYAG	2 cut(s)	426, 659
BstUI	CGCG	4 cut(s)	7, 9, 374, 415
BstV1I	GCAGC	7 cut(s)	118, 284, 294, 451, 566, 584, 645
BstV2I	GAAGAC	3 cut(s)	226, 607, 652
BsuI	GTATCC	1 cut(s)	183
BsuRI	GGCC	3 cut(s)	135, 153, 442
BtgI	CCRYGG	1 cut(s)	130
BtsCI	GGATG	2 cut(s)	310, 877
BtsI	GCAGTG	1 cut(s)	282
BtsIMutI	CAGTG	1 cut(s)	282
Cac8I	GCNNGC	3 cut(s)	7, 293, 417
CaiI	CAGNNNCTG	1 cut(s)	307
CfoI	GCGC	4 cut(s)	7, 9, 376, 415
Cfr10I	RCCGGY	1 cut(s)	291
Cfr13I	GGNCC	1 cut(s)	219
Csp6I	GTAC	2 cut(s)	211, 299
CviAII	CATG	1 cut(s)	329
CviQI	GTAC	2 cut(s)	211, 299
DdeI	CTNAG	2 cut(s)	225, 437
DpnI	GATC	3 cut(s)	185, 530, 866
DpnII	GATC	3 cut(s)	183, 528, 864
EciI	GGCGGA	1 cut(s)	278
Eco130I	CCWWGG	1 cut(s)	577
Eco32I	GATATC	1 cut(s)	486
Eco47I	GGWCC	1 cut(s)	219
EcoRII	CCWGG	1 cut(s)	171
EcoRV	GATATC	1 cut(s)	486
EcoT14I	CCWWGG	1 cut(s)	577
ErhI	CCWWGG	1 cut(s)	577
FaeI	CATG	1 cut(s)	332
FatI	CATG	1 cut(s)	328
FauI	CCCGC	1 cut(s)	192
FauNDI	CATATG	1 cut(s)	686
FbaI	TGATCA	1 cut(s)	528
FokI	GGATG	2 cut(s)	297, 864
GlaI	GCGC	4 cut(s)	6, 8, 375, 414
HaeIII	GGCC	3 cut(s)	135, 153, 442
HapII	CCGG	3 cut(s)	187, 206, 292
HhaI	GCGC	4 cut(s)	7, 9, 376, 415
Hin1II	CATG	1 cut(s)	332
Hin6I	GCGC	4 cut(s)	5, 7, 374, 413
HinP1I	GCGC	4 cut(s)	5, 7, 374, 413
HinfI	GANTC	7 cut(s)	35, 71, 123, 319, 603, 635, 766
HpaII	CCGG	3 cut(s)	187, 206, 292
HphI	GGTGA	2 cut(s)	61, 761
Hpy188I	TCNGA	4 cut(s)	66, 228, 483, 710
Hpy188III	TCNNGA	3 cut(s)	187, 314, 526
Hpy99I	CGWCG	3 cut(s)	79, 161, 167
HpyAV	CCTTC	2 cut(s)	223, 825
HpyCH4IV	ACGT	2 cut(s)	649, 675
HpyCH4V	TGCA	7 cut(s)	263, 310, 554, 572, 619, 661, 734
HpyF10VI	GCNNNNNNNGC	9 cut(s)	15, 18, 24, 53, 112, 167, 269, 343, 856
HpyF3I	CTNAG	2 cut(s)	225, 437
HpySE526I	ACGT	2 cut(s)	649, 675
Hsp92II	CATG	1 cut(s)	332
HspAI	GCGC	4 cut(s)	5, 7, 374, 413
Kpn2I	TCCGGA	1 cut(s)	186
KroI	GCCGGC	1 cut(s)	291
KroNI	GCCGGC	1 cut(s)	293
Ksp22I	TGATCA	1 cut(s)	528
Kzo9I	GATC	3 cut(s)	183, 528, 864
Lsp1109I	GCAGC	7 cut(s)	118, 284, 294, 451, 566, 584, 645
LweI	GCATC	2 cut(s)	319, 701
MaeII	ACGT	2 cut(s)	649, 675
MaeIII	GTNAC	1 cut(s)	676
MalI	GATC	3 cut(s)	185, 530, 866
MboI	GATC	3 cut(s)	183, 528, 864
MboII	GAAGA	7 cut(s)	118, 226, 352, 578, 612, 657, 810
MfeI	CAATTG	1 cut(s)	179
MluCI	AATT	4 cut(s)	179, 247, 399, 477
MlyI	GAGTC	4 cut(s)	44, 65, 597, 644
MmeI	TCCRAC	1 cut(s)	349
MnlI	CCTC	7 cut(s)	112, 146, 164, 432, 658, 834, 861
MroI	TCCGGA	1 cut(s)	186
MroNI	GCCGGC	1 cut(s)	291
MroXI	GAANNNNTTC	1 cut(s)	233
MseI	TTAA	1 cut(s)	785
MspA1I	CMGCKG	1 cut(s)	557
MspI	CCGG	3 cut(s)	187, 206, 292
MspR9I	CCNGG	1 cut(s)	173
MunI	CAATTG	1 cut(s)	179
MvaI	CCWGG	1 cut(s)	173
MvnI	CGCG	4 cut(s)	7, 9, 374, 415
MwoI	GCNNNNNNNGC	9 cut(s)	15, 18, 24, 53, 112, 167, 269, 343, 856
NaeI	GCCGGC	1 cut(s)	293
NdeI	CATATG	1 cut(s)	686
NdeII	GATC	3 cut(s)	183, 528, 864
NgoMIV	GCCGGC	1 cut(s)	291
NlaIII	CATG	1 cut(s)	332
NlaIV	GGNNCC	1 cut(s)	204
NmeAIII	GCCGAG	2 cut(s)	372, 468
NmuCI	GTSAC	1 cut(s)	676
NspI	RCATGY	1 cut(s)	332
PauI	GCGCGC	1 cut(s)	5
PciI	ACATGT	1 cut(s)	328
PcsI	WCGNNNNNNNCGW	1 cut(s)	162
PdiI	GCCGGC	1 cut(s)	293
PdmI	GAANNNNTTC	1 cut(s)	233
PfeI	GAWTC	3 cut(s)	123, 319, 766
PflMI	CCANNNNNTGG	1 cut(s)	860
PleI	GAGTC	4 cut(s)	43, 65, 597, 643
PpsI	GAGTC	4 cut(s)	43, 65, 597, 643
Ppu21I	YACGTR	1 cut(s)	676
PscI	ACATGT	1 cut(s)	328
Psp6I	CCWGG	1 cut(s)	171
PspGI	CCWGG	1 cut(s)	171
PspN4I	GGNNCC	1 cut(s)	204
PspPI	GGNCC	1 cut(s)	219
PstI	CTGCAG	1 cut(s)	663
PstNI	CAGNNNCTG	1 cut(s)	307
PteI	GCGCGC	1 cut(s)	5
PvuII	CAGCTG	1 cut(s)	557
RsaI	GTAC	2 cut(s)	212, 300
RsaNI	GTAC	2 cut(s)	211, 299
SaqAI	TTAA	1 cut(s)	785
Sau3AI	GATC	3 cut(s)	183, 528, 864
Sau96I	GGNCC	1 cut(s)	219
SchI	GAGTC	4 cut(s)	44, 65, 597, 644
ScrFI	CCNGG	1 cut(s)	173
SfaNI	GCATC	2 cut(s)	319, 701
SfcI	CTRYAG	2 cut(s)	426, 659
SinI	GGWCC	1 cut(s)	219
Sse9I	AATT	4 cut(s)	179, 247, 399, 477
StyD4I	CCNGG	1 cut(s)	171
StyI	CCWWGG	1 cut(s)	577
TaiI	ACGT	2 cut(s)	652, 678
TaqI	TCGA	2 cut(s)	77, 268
TaqII	GACCGA	1 cut(s)	135
TasI	AATT	4 cut(s)	179, 247, 399, 477
TatI	WGTACW	1 cut(s)	298
TauI	GCSGC	7 cut(s)	12, 15, 18, 21, 44, 47, 749
TfiI	GAWTC	3 cut(s)	123, 319, 766
Tru1I	TTAA	1 cut(s)	785
Tru9I	TTAA	1 cut(s)	785
TscAI	CASTG	1 cut(s)	282
TseFI	GTSAC	1 cut(s)	676
TseI	GCWGC	7 cut(s)	106, 272, 307, 464, 554, 572, 658
Tsp45I	GTSAC	1 cut(s)	676
TspDTI	ATGAA	2 cut(s)	271, 823
TspRI	CASTG	1 cut(s)	282
Van91I	CCANNNNNTGG	1 cut(s)	860
VpaK11BI	GGWCC	1 cut(s)	219
XapI	RAATTY	1 cut(s)	399
XceI	RCATGY	1 cut(s)	332
XmnI	GAANNNNTTC	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.