Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006559

Physical Location & Seq

Genomic Coordinates Forward (+)

15198573 .. 15199826

Gene Structure 1254 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0164300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGTTTCCCAACTTGAAAGAATTGTATCTTTCTGACAATCATTTTAACGGTACAATTCCACCGTCTCTTTGCAACATAAAAGATTTGTCACTCCTTTCCCTAAATACCAATCACTTGCATGGAGAATTCCCTCAAGCATGGAGCGCTTGGCGCAATATACTTGTTGTAGATGTAGCACAAAACAATCTGTCTGGTAATATCCCCAGTTCAATGGGTGTGCCAAGTTCACTTGTCATGTTAAAGATGAACAACAACAATTTTGGAGGCAAAATTCCTTCGTCTATGTTCCACAATTGCACTGCTTTGAGGAGTATTGATCTTGGGGACAACAGGTTTACAGGAAGTATACCATTGTGGACAAGAATCACAAGATCAAATGCATCATCCAAGTTACAAATGCTACGTTTGCGATCAAACTCTTTGAGCGGGCATATTCCCCACATATTGTGCTATCTGCCATCCCTTCATATCATAGACCTTGGTGACAACAACTTTTCAGGGACTATTCCAAAGTGTTTGTTCCATTTGACTTCTTTGGTTCATGGTACCAGTTCCTCTGGTAAGCCCTATGATAATGTTACTTATCCTCAGCAAACCACTTTGACGTTGAAAGGAAGAGAACTTGTGTACGATACAACTCTCGGTTTGGTGTGTAGCATTGATCTCTCATCCAACAAGTTAGAAGGTGAAATTCCTGAAGAAATAACCAGCCTCATTGAGTTAGGTACCTTGAACTTGTCGAGAAATCATTTTAATGGAAACATTCCCTCAAACATTGGAAATCTGATAAAGGTGGAAACTCTTGATCTTTCCAACAACAACCTTTCAGGAGTGATTCCTCAAAGTTTGTCTTCTTTAACCTTCTTGTCTCACTTGAACTTGTCTTATAACAACTTGTCCGGAAGGATTCCTACAAGCAATCAGCTACAAGCAGTTAATGAGGCATCCATTTACATGGGCAATCCATATTTGTGTGGCTTTCCTCTTTTAACCAAGTGCGTGGGAGATAACACACCATCACCGATGAATCAAGGTGATGATGGAAGAGACCATAAAGATAAAGATGATATTGGAAAGCTTGGTTACTATGTTAGCGTCACACTTGGCTTCATCCTTGGTTTTTGGGGAGTTTGTGGCACATTGCTTGTGAAGCACTCATGGAGGTATGCCTACTTTCAATTTTTTGATCACATAAAAGATAAAGTGGCATTGGCAATTGCATTGAAGGTGGCTCGTTTTCGAAGACGGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0008150 GO:0009705 GO:0016020 GO:0016032 GO:0019058 GO:0019079 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046786 GO:0051704 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1084

Protein Analysis

417

Amino Acids

46.1

Weight (kDa)

8.54

Isoelectric Point (pI)

43.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	228 - 306	5.7e-06	Leucine-rich repeat region
LRR_8	PF13855	241 - 299	2.7e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14530 AT1G14530 AT2G02180
fragaria_vesca	FvH4_4g36360
malus_domestica	MD13G1009600.v1.1 MD16G1008000.v1.1
prunus_persica	Prupe.1G342900_v2.0.a1
pyrus_communis	pycom13g00820 pycom16g00780
rosa_chinensis	RchiOBHm_Chr4g0446101 RchiOBHm_Chr5g0037351
rosa_laevigata	RLG00000005692 RLG00000033776
rosa_multiflora	Rmu_sc0007511.1_g000008
rosa_roxburghii	Rroxscaffold_5G00386500
rosa_rugosa	Rorug04G0367900 Rorug05G0164300
rosa_samantha	Rh4AG429400 Rh4BG438900 Rh4CG456200 Rh5AG253900 Rh5BG256000 Rh5CG289100 Rh5DG264400
rosa_wichuraiana	Rw4G036690 Rw5G023510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	888
Acc65I	GGTACC	2 cut(s)	545, 725
AccB1I	GGYRCC	2 cut(s)	545, 725
AccBSI	CCGCTC	1 cut(s)	426
AccI	GTMKAC	1 cut(s)	346
AccIII	TCCGGA	1 cut(s)	899
AciI	CCGC	1 cut(s)	426
AcsI	RAATTY	3 cut(s)	125, 270, 690
AcuI	CTGAAG	1 cut(s)	717
AfaI	GTAC	4 cut(s)	52, 547, 629, 727
AfeI	AGCGCT	1 cut(s)	145
AgsI	TTSAA	7 cut(s)	16, 210, 610, 733, 877, 1178, 1225
AluBI	AGCT	2 cut(s)	925, 1078
AluI	AGCT	2 cut(s)	925, 1078
Alw26I	GTCTC	3 cut(s)	69, 873, 1041
Aor13HI	TCCGGA	1 cut(s)	899
Aor51HI	AGCGCT	1 cut(s)	145
ApoI	RAATTY	3 cut(s)	125, 270, 690
Asp718I	GGTACC	2 cut(s)	545, 725
AspLEI	GCGC	2 cut(s)	146, 153
AsuHPI	GGTGA	4 cut(s)	494, 698, 1011, 1046
AsuII	TTCGAA	1 cut(s)	1240
BanI	GGYRCC	2 cut(s)	545, 725
BarI	GAAGNNNNNNTAC	2 cut(s)	895, 927
BbsI	GAAGAC	2 cut(s)	843, 1249
BbvCI	CCTCAGC	1 cut(s)	588
BccI	CCATC	3 cut(s)	466, 1024, 1034
BclI	TGATCA	1 cut(s)	1186
BcoDI	GTCTC	3 cut(s)	69, 873, 1041
BfoI	RGCGCY	1 cut(s)	147
BmiI	GGNNCC	2 cut(s)	547, 727
BmrI	ACTGGG	1 cut(s)	198
BmsI	GCATC	2 cut(s)	389, 953
BmuI	ACTGGG	1 cut(s)	198
BpiI	GAAGAC	2 cut(s)	843, 1249
Bpu10I	CCTNAGC	1 cut(s)	588
Bpu14I	TTCGAA	1 cut(s)	1240
BpuEI	CTTGAG	1 cut(s)	117
BsaI	GGTCTC	1 cut(s)	1041
BsaJI	CCNNGG	2 cut(s)	478, 1114
BsaWI	WCCGGW	1 cut(s)	899
Bse1I	ACTGG	2 cut(s)	204, 549
Bse3DI	GCAATG	1 cut(s)	1139
BseAI	TCCGGA	1 cut(s)	899
BseDI	CCNNGG	2 cut(s)	478, 1114
BseGI	GGATG	5 cut(s)	383, 458, 668, 944, 1110
BseMI	GCAATG	1 cut(s)	1139
BseMII	CTCAG	1 cut(s)	602
BseNI	ACTGG	2 cut(s)	204, 549
BseRI	GAGGAG	1 cut(s)	322
BshNI	GGYRCC	2 cut(s)	545, 725
BsiSI	CCGG	1 cut(s)	900
BslFI	GGGAC	2 cut(s)	338, 514
BsmAI	GTCTC	3 cut(s)	69, 873, 1041
BsmBI	CGTCTC	1 cut(s)	69
BsmFI	GGGAC	2 cut(s)	338, 514
Bso31I	GGTCTC	1 cut(s)	1041
Bsp119I	TTCGAA	1 cut(s)	1240
Bsp13I	TCCGGA	1 cut(s)	899
Bsp143I	GATC	6 cut(s)	316, 371, 410, 661, 805, 1186
BspACI	CCGC	1 cut(s)	426
BspCNI	CTCAG	1 cut(s)	601
BspEI	TCCGGA	1 cut(s)	899
BspHI	TCATGA	1 cut(s)	1250
BspLI	GGNNCC	2 cut(s)	547, 727
BspT104I	TTCGAA	1 cut(s)	1240
BspT107I	GGYRCC	2 cut(s)	545, 725
BspTNI	GGTCTC	1 cut(s)	1041
BsrBI	CCGCTC	1 cut(s)	426
BsrDI	GCAATG	1 cut(s)	1139
BsrI	ACTGG	2 cut(s)	204, 549
BssECI	CCNNGG	2 cut(s)	478, 1114
BssMI	GATC	6 cut(s)	316, 371, 410, 661, 805, 1186
BssNAI	GTATAC	1 cut(s)	347
BssT1I	CCWWGG	2 cut(s)	478, 1114
Bst1107I	GTATAC	1 cut(s)	347
Bst4CI	ACNGT	3 cut(s)	50, 63, 1248
Bst6I	CTCTTC	2 cut(s)	610, 1039
BstBI	TTCGAA	1 cut(s)	1240
BstC8I	GCNNGC	1 cut(s)	428
BstDEI	CTNAG	1 cut(s)	588
BstF5I	GGATG	5 cut(s)	383, 458, 668, 944, 1110
BstH2I	RGCGCY	1 cut(s)	147
BstHHI	GCGC	2 cut(s)	146, 153
BstKTI	GATC	6 cut(s)	319, 374, 413, 664, 808, 1189
BstMAI	GTCTC	3 cut(s)	69, 873, 1041
BstMBI	GATC	6 cut(s)	316, 371, 410, 661, 805, 1186
BstMWI	GCNNNNNNNGC	4 cut(s)	143, 150, 406, 1150
BstV2I	GAAGAC	2 cut(s)	843, 1249
BstXI	CCANNNNNNTGG	3 cut(s)	211, 955, 1000
BstZ17I	GTATAC	1 cut(s)	347
BtsCI	GGATG	5 cut(s)	383, 458, 668, 944, 1110
BtsI	GCAGTG	1 cut(s)	297
BtsIMutI	CAGTG	1 cut(s)	297
Cac8I	GCNNGC	1 cut(s)	428
CciI	TCATGA	1 cut(s)	1250
CfoI	GCGC	2 cut(s)	146, 153
CseI	GACGC	1 cut(s)	1084
Csp6I	GTAC	4 cut(s)	51, 546, 628, 726
CviAII	CATG	7 cut(s)	119, 138, 235, 542, 955, 1158, 1251
CviJI	RGCY	7 cut(s)	565, 711, 925, 978, 1078, 1107, 1232
CviKI_1	RGCY	7 cut(s)	565, 711, 925, 978, 1078, 1107, 1232
CviQI	GTAC	4 cut(s)	51, 546, 628, 726
DdeI	CTNAG	1 cut(s)	588
DpnI	GATC	6 cut(s)	318, 373, 412, 663, 807, 1188
DpnII	GATC	6 cut(s)	316, 371, 410, 661, 805, 1186
Eam1104I	CTCTTC	2 cut(s)	610, 1039
EarI	CTCTTC	2 cut(s)	610, 1039
Eco130I	CCWWGG	2 cut(s)	478, 1114
Eco31I	GGTCTC	1 cut(s)	1041
Eco47III	AGCGCT	1 cut(s)	145
Eco57I	CTGAAG	1 cut(s)	717
EcoRI	GAATTC	1 cut(s)	125
EcoT14I	CCWWGG	2 cut(s)	478, 1114
EcoT22I	ATGCAT	1 cut(s)	382
ErhI	CCWWGG	2 cut(s)	478, 1114
Esp3I	CGTCTC	1 cut(s)	69
FaeI	CATG	7 cut(s)	122, 141, 238, 545, 958, 1161, 1254
FalI	AAGNNNNNCTT	2 cut(s)	835, 867
FaqI	GGGAC	2 cut(s)	338, 514
FatI	CATG	7 cut(s)	118, 137, 234, 541, 954, 1157, 1250
FauI	CCCGC	1 cut(s)	419
FbaI	TGATCA	1 cut(s)	1186
FblI	GTMKAC	1 cut(s)	346
FokI	GGATG	5 cut(s)	370, 445, 655, 931, 1097
GlaI	GCGC	2 cut(s)	145, 152
HaeII	RGCGCY	1 cut(s)	147
HapII	CCGG	1 cut(s)	900
HgaI	GACGC	1 cut(s)	1084
HhaI	GCGC	2 cut(s)	146, 153
Hin1II	CATG	7 cut(s)	122, 141, 238, 545, 958, 1161, 1254
Hin6I	GCGC	2 cut(s)	144, 151
HinP1I	GCGC	2 cut(s)	144, 151
HindIII	AAGCTT	1 cut(s)	1076
HinfI	GANTC	4 cut(s)	363, 835, 907, 1027
HpaII	CCGG	1 cut(s)	900
HphI	GGTGA	4 cut(s)	494, 698, 1011, 1046
Hpy166II	GTNNAC	5 cut(s)	227, 336, 347, 357, 628
Hpy188I	TCNGA	2 cut(s)	34, 786
Hpy188III	TCNNGA	6 cut(s)	695, 741, 803, 828, 900, 1251
Hpy8I	GTNNAC	5 cut(s)	227, 336, 347, 357, 628
HpyAV	CCTTC	6 cut(s)	285, 473, 677, 871, 897, 1219
HpyCH4III	ACNGT	3 cut(s)	50, 63, 1248
HpyCH4IV	ACGT	2 cut(s)	403, 605
HpyCH4V	TGCA	5 cut(s)	72, 118, 297, 380, 1220
HpyF10VI	GCNNNNNNNGC	4 cut(s)	143, 150, 406, 1150
HpyF3I	CTNAG	1 cut(s)	588
HpySE526I	ACGT	2 cut(s)	403, 605
Hsp92II	CATG	7 cut(s)	122, 141, 238, 545, 958, 1161, 1254
HspAI	GCGC	2 cut(s)	144, 151
Kpn2I	TCCGGA	1 cut(s)	899
KpnI	GGTACC	2 cut(s)	549, 729
Ksp22I	TGATCA	1 cut(s)	1186
Kzo9I	GATC	6 cut(s)	316, 371, 410, 661, 805, 1186
LmnI	GCTCC	1 cut(s)	141
LweI	GCATC	2 cut(s)	389, 953
MaeII	ACGT	2 cut(s)	403, 605
MaeIII	GTNAC	6 cut(s)	87, 390, 482, 577, 1082, 1096
MalI	GATC	6 cut(s)	318, 373, 412, 663, 807, 1188
MbiI	CCGCTC	1 cut(s)	426
MboI	GATC	6 cut(s)	316, 371, 410, 661, 805, 1186
MboII	GAAGA	5 cut(s)	627, 710, 843, 1056, 1254
MfeI	CAATTG	2 cut(s)	292, 1215
MluCI	AATT	9 cut(s)	20, 54, 125, 256, 270, 292, 690, 1178, 1215
MmeI	TCCRAC	2 cut(s)	696, 837
Mph1103I	ATGCAT	1 cut(s)	382
MroI	TCCGGA	1 cut(s)	899
MseI	TTAA	6 cut(s)	45, 239, 753, 857, 936, 989
MslI	CAYNNNNRTG	4 cut(s)	117, 753, 953, 970
MspI	CCGG	1 cut(s)	900
MunI	CAATTG	2 cut(s)	292, 1215
MwoI	GCNNNNNNNGC	4 cut(s)	143, 150, 406, 1150
NdeII	GATC	6 cut(s)	316, 371, 410, 661, 805, 1186
NlaIII	CATG	7 cut(s)	122, 141, 238, 545, 958, 1161, 1254
NlaIV	GGNNCC	2 cut(s)	547, 727
NmuCI	GTSAC	3 cut(s)	87, 482, 1096
NsiI	ATGCAT	1 cut(s)	382
NspV	TTCGAA	1 cut(s)	1240
PagI	TCATGA	1 cut(s)	1250
PfeI	GAWTC	4 cut(s)	363, 835, 907, 1027
PsiI	TTATAA	1 cut(s)	888
PspN4I	GGNNCC	2 cut(s)	547, 727
RsaI	GTAC	4 cut(s)	52, 547, 629, 727
RsaNI	GTAC	4 cut(s)	51, 546, 628, 726
RseI	CAYNNNNRTG	4 cut(s)	117, 753, 953, 970
SaqAI	TTAA	6 cut(s)	45, 239, 753, 857, 936, 989
Sau3AI	GATC	6 cut(s)	316, 371, 410, 661, 805, 1186
SfaNI	GCATC	2 cut(s)	389, 953
SfuI	TTCGAA	1 cut(s)	1240
SmiMI	CAYNNNNRTG	4 cut(s)	117, 753, 953, 970
SmlI	CTYRAG	1 cut(s)	132
SmoI	CTYRAG	1 cut(s)	132
Sse9I	AATT	9 cut(s)	20, 54, 125, 256, 270, 292, 690, 1178, 1215
SsiI	CCGC	1 cut(s)	426
StyI	CCWWGG	2 cut(s)	478, 1114
TaaI	ACNGT	3 cut(s)	50, 63, 1248
TaiI	ACGT	2 cut(s)	406, 608
TaqI	TCGA	2 cut(s)	740, 1240
TasI	AATT	9 cut(s)	20, 54, 125, 256, 270, 292, 690, 1178, 1215
TfiI	GAWTC	4 cut(s)	363, 835, 907, 1027
Tru1I	TTAA	6 cut(s)	45, 239, 753, 857, 936, 989
Tru9I	TTAA	6 cut(s)	45, 239, 753, 857, 936, 989
TscAI	CASTG	1 cut(s)	304
TseFI	GTSAC	3 cut(s)	87, 482, 1096
Tsp45I	GTSAC	3 cut(s)	87, 482, 1096
TspDTI	ATGAA	5 cut(s)	260, 455, 530, 1040, 1099
TspRI	CASTG	1 cut(s)	304
XapI	RAATTY	3 cut(s)	125, 270, 690
XmiI	GTMKAC	1 cut(s)	346
Zsp2I	ATGCAT	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.