Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0006559

Physical Location & Seq

Genomic Coordinates Reverse (-)

514475 .. 518819

Gene Structure 4345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g00820.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGCGCGTAGCGGAGGCGGCGGCGGCGGCGTCGGGGTGGTGGAGTCGGCGGTGATAGCTTACAACATGAGAGACGCATCGAGTTGGTGGCACGACATCAATACCTCCTCTATTTGGCAAGACCGCATACTTCATGCCCTTGCTATTCTCTACGGCCTCGTCGCCGTCGTTGCCCTGGTTCAATTGATTCGGATACAATTGAGAGTGCCGGAGTACGGTTGGACCACACAGAAAGTCTTCCACTTTCTTAATTTCGTTGTCAATGGAGTTCGATCGGCTGTGTTTGTTTTCTGCCGGCAAGTGCAGAAGCTGCATCCGGAGATTGTCCAACATATCTTGCTTGATATGCCGAGTCTTGCTTTCTTCACAACCTATGCACTCTTGGTTCTGTTCTGGGCCGAAATTTACTATCAGATTGCTATGTGGCTGATATTATGGTGGAAGCCTATCCCAGTTCTCTTCATCTTATCTAAGATGTTCTTTGCAGGCGTGTCCTTATTCGCAGCCCTTGGGTTTCTTCTATATGGTGGAAGACTCTTCTTGATGTTGCAGAGATTTCCTGTTGAATCAAAGGGACGACGTAAGAAGCTGCAGGAGGTTGGCTATGTGACAACCATATGTTTTACATGTTTCCTTGTCAGATGTGTAATGATGTGCTTCAATGCATTCGATAAAGCTGCAAACCTTGATGTTTTGAATCACCCGGTTCTAAACTTCATATATTACCTGTTGGTGGAGATATTGCCTTCTTCTTTGGTCCTTTTCATTTTGAGGAAGTTGCCTCCAAAGCGTGGGATCACACAATATCATCCCATTCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0008150 GO:0009705 GO:0016020 GO:0016032 GO:0019058 GO:0019079 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046786 GO:0051704 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1084

Protein Analysis

274

Amino Acids

31.33

Weight (kDa)

9.68

Isoelectric Point (pI)

43.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14530 AT1G14530 AT2G02180
fragaria_vesca	FvH4_4g36360
malus_domestica	MD13G1009600.v1.1 MD16G1008000.v1.1
prunus_persica	Prupe.1G342900_v2.0.a1
pyrus_communis	pycom13g00820 pycom16g00780
rosa_chinensis	RchiOBHm_Chr4g0446101 RchiOBHm_Chr5g0037351
rosa_laevigata	RLG00000005692 RLG00000033776
rosa_multiflora	Rmu_sc0007511.1_g000008
rosa_roxburghii	Rroxscaffold_5G00386500
rosa_rugosa	Rorug04G0367900 Rorug05G0164300
rosa_samantha	Rh4AG429400 Rh4BG438900 Rh4CG456200 Rh5AG253900 Rh5BG256000 Rh5CG289100 Rh5DG264400
rosa_wichuraiana	Rw4G036690 Rw5G023510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	791
AccII	CGCG	1 cut(s)	7
AccIII	TCCGGA	1 cut(s)	316
AciI	CCGC	7 cut(s)	12, 18, 21, 24, 27, 50, 124
AclWI	GGATC	1 cut(s)	803
AcsI	RAATTY	1 cut(s)	402
AcyI	GRCGYC	1 cut(s)	30
AfaI	GTAC	1 cut(s)	215
AfiI	CCNNNNNNNGG	4 cut(s)	114, 215, 733, 791
AflIII	ACRYGT	1 cut(s)	626
AgsI	TTSAA	4 cut(s)	182, 566, 661, 697
AjnI	CCWGG	1 cut(s)	174
AluBI	AGCT	4 cut(s)	59, 310, 589, 677
AluI	AGCT	4 cut(s)	59, 310, 589, 677
Alw26I	GTCTC	1 cut(s)	66
AlwI	GGATC	1 cut(s)	803
AlwNI	CAGNNNCTG	1 cut(s)	310
Aor13HI	TCCGGA	1 cut(s)	316
AoxI	GGCC	2 cut(s)	154, 396
ApeKI	GCWGC	4 cut(s)	310, 503, 589, 677
ApoI	RAATTY	1 cut(s)	402
Asp700I	GAANNNNTTC	1 cut(s)	236
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	3 cut(s)	222, 396, 757
AsuC2I	CCSGG	1 cut(s)	704
AsuHPI	GGTGA	2 cut(s)	64, 692
AvaII	GGWCC	2 cut(s)	222, 757
BbsI	GAAGAC	2 cut(s)	229, 538
BbvI	GCAGC	4 cut(s)	297, 515, 576, 664
BceAI	ACGGC	2 cut(s)	149, 169
BcgI	CGANNNNNNTGC	2 cut(s)	659, 693
BciT130I	CCWGG	1 cut(s)	176
BciVI	GTATCC	1 cut(s)	186
BcnI	CCSGG	1 cut(s)	704
BcoDI	GTCTC	1 cut(s)	66
BfmI	CTRYAG	1 cut(s)	590
BfuI	GTATCC	1 cut(s)	186
BisI	GCNGC	8 cut(s)	19, 22, 25, 28, 311, 504, 590, 678
BlsI	GCNGC	8 cut(s)	20, 23, 26, 29, 312, 505, 591, 679
Bme1390I	CCNGG	2 cut(s)	176, 704
Bme18I	GGWCC	2 cut(s)	222, 757
BmgT120I	GGNCC	3 cut(s)	222, 396, 757
BmrFI	CCNGG	2 cut(s)	176, 704
BmrI	ACTGGG	1 cut(s)	446
BmsI	GCATC	2 cut(s)	86, 322
BmuI	ACTGGG	1 cut(s)	446
BpiI	GAAGAC	2 cut(s)	229, 538
BpuMI	CCSGG	1 cut(s)	704
BsaHI	GRCGYC	1 cut(s)	30
BsaJI	CCNNGG	2 cut(s)	174, 508
BsaWI	WCCGGW	1 cut(s)	316
Bsc4I	CCNNNNNNNGG	4 cut(s)	114, 215, 733, 791
Bse118I	RCCGGY	1 cut(s)	294
Bse1I	ACTGG	1 cut(s)	452
BseAI	TCCGGA	1 cut(s)	316
BseBI	CCWGG	1 cut(s)	176
BseDI	CCNNGG	2 cut(s)	174, 508
BseGI	GGATG	2 cut(s)	313, 808
BseLI	CCNNNNNNNGG	4 cut(s)	114, 215, 733, 791
BseNI	ACTGG	1 cut(s)	452
BseRI	GAGGAG	1 cut(s)	97
BseXI	GCAGC	4 cut(s)	297, 515, 576, 664
BsgI	GTGCAG	1 cut(s)	323
Bsh1236I	CGCG	1 cut(s)	7
Bsh1285I	CGRYCG	1 cut(s)	275
BshFI	GGCC	2 cut(s)	156, 398
BsiEI	CGRYCG	1 cut(s)	275
BsiSI	CCGG	4 cut(s)	209, 295, 317, 704
BslFI	GGGAC	1 cut(s)	588
BslI	CCNNNNNNNGG	4 cut(s)	114, 215, 733, 791
BsmAI	GTCTC	1 cut(s)	66
BsmBI	CGTCTC	1 cut(s)	66
BsmFI	GGGAC	1 cut(s)	588
BsmI	GAATGC	1 cut(s)	665
BsnI	GGCC	2 cut(s)	156, 398
Bsp13I	TCCGGA	1 cut(s)	316
Bsp143I	GATC	2 cut(s)	272, 795
BspACI	CCGC	7 cut(s)	12, 18, 21, 24, 27, 50, 124
BspANI	GGCC	2 cut(s)	156, 398
BspEI	TCCGGA	1 cut(s)	316
BspFNI	CGCG	1 cut(s)	7
BspMAI	CTGCAG	1 cut(s)	594
BspPI	GGATC	1 cut(s)	803
BsrFI	RCCGGY	1 cut(s)	294
BsrI	ACTGG	1 cut(s)	452
BssAI	RCCGGY	1 cut(s)	294
BssECI	CCNNGG	2 cut(s)	174, 508
BssMI	GATC	2 cut(s)	272, 795
BssNI	GRCGYC	1 cut(s)	30
BssT1I	CCWWGG	1 cut(s)	508
Bst2UI	CCWGG	1 cut(s)	176
Bst4CI	ACNGT	1 cut(s)	218
Bst6I	CTCTTC	2 cut(s)	464, 542
BstACI	GRCGYC	1 cut(s)	30
BstAPI	GCANNNNNTGC	1 cut(s)	310
BstC8I	GCNNGC	2 cut(s)	296, 487
BstDEI	CTNAG	1 cut(s)	471
BstF5I	GGATG	2 cut(s)	313, 808
BstFNI	CGCG	1 cut(s)	7
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	2 cut(s)	275, 798
BstMAI	GTCTC	1 cut(s)	66
BstMBI	GATC	2 cut(s)	272, 795
BstMCI	CGRYCG	1 cut(s)	275
BstMWI	GCNNNNNNNGC	8 cut(s)	18, 24, 27, 56, 170, 310, 346, 787
BstNI	CCWGG	1 cut(s)	176
BstNSI	RCATGY	1 cut(s)	630
BstSCI	CCNGG	2 cut(s)	174, 702
BstSFI	CTRYAG	1 cut(s)	590
BstUI	CGCG	1 cut(s)	7
BstV1I	GCAGC	4 cut(s)	297, 515, 576, 664
BstV2I	GAAGAC	2 cut(s)	229, 538
BsuI	GTATCC	1 cut(s)	186
BsuRI	GGCC	2 cut(s)	156, 398
BtsCI	GGATG	2 cut(s)	313, 808
Cac8I	GCNNGC	2 cut(s)	296, 487
CaiI	CAGNNNCTG	1 cut(s)	310
CfoI	GCGC	1 cut(s)	7
Cfr10I	RCCGGY	1 cut(s)	294
Cfr13I	GGNCC	3 cut(s)	222, 396, 757
CseI	GACGC	2 cut(s)	19, 83
Csp6I	GTAC	1 cut(s)	214
CviAII	CATG	3 cut(s)	67, 134, 627
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	1 cut(s)	471
DpnI	GATC	2 cut(s)	274, 797
DpnII	GATC	2 cut(s)	272, 795
Eam1104I	CTCTTC	2 cut(s)	464, 542
EarI	CTCTTC	2 cut(s)	464, 542
Eco130I	CCWWGG	1 cut(s)	508
Eco47I	GGWCC	2 cut(s)	222, 757
EcoRII	CCWGG	1 cut(s)	174
EcoT14I	CCWWGG	1 cut(s)	508
EcoT22I	ATGCAT	1 cut(s)	667
ErhI	CCWWGG	1 cut(s)	508
Esp3I	CGTCTC	1 cut(s)	66
FaeI	CATG	3 cut(s)	70, 137, 630
FalI	AAGNNNNNCTT	2 cut(s)	464, 496
FaqI	GGGAC	1 cut(s)	588
FatI	CATG	3 cut(s)	66, 133, 626
FauNDI	CATATG	1 cut(s)	617
Fnu4HI	GCNGC	8 cut(s)	19, 22, 25, 28, 311, 504, 590, 678
FokI	GGATG	2 cut(s)	300, 795
Fsp4HI	GCNGC	8 cut(s)	19, 22, 25, 28, 311, 504, 590, 678
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	8 cut(s)	19, 22, 25, 28, 311, 504, 590, 678
HaeIII	GGCC	2 cut(s)	156, 398
HapII	CCGG	4 cut(s)	209, 295, 317, 704
HgaI	GACGC	2 cut(s)	19, 83
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	30
Hin1II	CATG	3 cut(s)	70, 137, 630
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HinfI	GANTC	6 cut(s)	44, 187, 352, 534, 566, 697
HpaII	CCGG	4 cut(s)	209, 295, 317, 704
HphI	GGTGA	2 cut(s)	64, 692
Hpy188I	TCNGA	3 cut(s)	192, 414, 641
Hpy188III	TCNNGA	2 cut(s)	317, 541
Hpy99I	CGWCG	4 cut(s)	35, 164, 170, 582
HpyAV	CCTTC	1 cut(s)	756
HpyCH4III	ACNGT	1 cut(s)	218
HpyCH4IV	ACGT	1 cut(s)	580
HpyCH4V	TGCA	8 cut(s)	304, 313, 377, 485, 550, 592, 665, 680
HpyF10VI	GCNNNNNNNGC	8 cut(s)	18, 24, 27, 56, 170, 310, 346, 787
HpyF3I	CTNAG	1 cut(s)	471
HpySE526I	ACGT	1 cut(s)	580
Hsp92I	GRCGYC	1 cut(s)	30
Hsp92II	CATG	3 cut(s)	70, 137, 630
HspAI	GCGC	1 cut(s)	5
Kpn2I	TCCGGA	1 cut(s)	316
KroI	GCCGGC	1 cut(s)	294
KroNI	GCCGGC	1 cut(s)	296
Kzo9I	GATC	2 cut(s)	272, 795
Lsp1109I	GCAGC	4 cut(s)	297, 515, 576, 664
LweI	GCATC	2 cut(s)	86, 322
MaeII	ACGT	1 cut(s)	580
MaeIII	GTNAC	1 cut(s)	607
MalI	GATC	2 cut(s)	274, 797
MboI	GATC	2 cut(s)	272, 795
MboII	GAAGA	7 cut(s)	229, 355, 451, 509, 529, 543, 741
MfeI	CAATTG	2 cut(s)	182, 197
MluCI	AATT	4 cut(s)	182, 197, 250, 402
MlyI	GAGTC	3 cut(s)	53, 361, 528
MmeI	TCCRAC	2 cut(s)	200, 352
MnlI	CCTC	7 cut(s)	8, 115, 118, 167, 589, 765, 792
Mph1103I	ATGCAT	1 cut(s)	667
MroI	TCCGGA	1 cut(s)	316
MroNI	GCCGGC	1 cut(s)	294
MroXI	GAANNNNTTC	1 cut(s)	236
MseI	TTAA	1 cut(s)	249
MspI	CCGG	4 cut(s)	209, 295, 317, 704
MspR9I	CCNGG	2 cut(s)	176, 704
MunI	CAATTG	2 cut(s)	182, 197
Mva1269I	GAATGC	1 cut(s)	665
MvaI	CCWGG	1 cut(s)	176
MvnI	CGCG	1 cut(s)	7
MwoI	GCNNNNNNNGC	8 cut(s)	18, 24, 27, 56, 170, 310, 346, 787
NaeI	GCCGGC	1 cut(s)	296
NciI	CCSGG	1 cut(s)	704
NdeI	CATATG	1 cut(s)	617
NdeII	GATC	2 cut(s)	272, 795
NgoMIV	GCCGGC	1 cut(s)	294
NlaIII	CATG	3 cut(s)	70, 137, 630
NmeAIII	GCCGAG	1 cut(s)	375
NmuCI	GTSAC	1 cut(s)	607
NsiI	ATGCAT	1 cut(s)	667
NspI	RCATGY	1 cut(s)	630
PciI	ACATGT	1 cut(s)	626
PcsI	WCGNNNNNNNCGW	1 cut(s)	165
PctI	GAATGC	1 cut(s)	665
PdiI	GCCGGC	1 cut(s)	296
PdmI	GAANNNNTTC	1 cut(s)	236
PfeI	GAWTC	3 cut(s)	187, 566, 697
PflMI	CCANNNNNTGG	1 cut(s)	791
PkrI	GCNGC	8 cut(s)	20, 23, 26, 29, 312, 505, 591, 679
Ple19I	CGATCG	1 cut(s)	275
PleI	GAGTC	3 cut(s)	52, 360, 528
PpsI	GAGTC	3 cut(s)	52, 360, 528
PscI	ACATGT	1 cut(s)	626
Psp6I	CCWGG	1 cut(s)	174
PspGI	CCWGG	1 cut(s)	174
PspPI	GGNCC	3 cut(s)	222, 396, 757
PstI	CTGCAG	1 cut(s)	594
PstNI	CAGNNNCTG	1 cut(s)	310
PvuI	CGATCG	1 cut(s)	275
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
SaqAI	TTAA	1 cut(s)	249
SatI	GCNGC	8 cut(s)	19, 22, 25, 28, 311, 504, 590, 678
Sau3AI	GATC	2 cut(s)	272, 795
Sau96I	GGNCC	3 cut(s)	222, 396, 757
SchI	GAGTC	3 cut(s)	53, 361, 528
ScrFI	CCNGG	2 cut(s)	176, 704
SfaNI	GCATC	2 cut(s)	86, 322
SfcI	CTRYAG	1 cut(s)	590
SinI	GGWCC	2 cut(s)	222, 757
Sse9I	AATT	4 cut(s)	182, 197, 250, 402
SsiI	CCGC	7 cut(s)	12, 18, 21, 24, 27, 50, 124
StyD4I	CCNGG	2 cut(s)	174, 702
StyI	CCWWGG	1 cut(s)	508
TaaI	ACNGT	1 cut(s)	218
TaiI	ACGT	1 cut(s)	583
TaqI	TCGA	3 cut(s)	80, 271, 669
TasI	AATT	4 cut(s)	182, 197, 250, 402
TauI	GCSGC	4 cut(s)	21, 24, 27, 30
TfiI	GAWTC	3 cut(s)	187, 566, 697
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TseFI	GTSAC	1 cut(s)	607
TseI	GCWGC	4 cut(s)	310, 503, 589, 677
Tsp45I	GTSAC	1 cut(s)	607
TspDTI	ATGAA	4 cut(s)	122, 451, 706, 754
Van91I	CCANNNNNTGG	1 cut(s)	791
VpaK11BI	GGWCC	2 cut(s)	222, 757
XapI	RAATTY	1 cut(s)	402
XceI	RCATGY	1 cut(s)	630
XmnI	GAANNNNTTC	1 cut(s)	236
Zsp2I	ATGCAT	1 cut(s)	667

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.