Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006559

Physical Location & Seq

Genomic Coordinates Reverse (-)

32009719 .. 32010612

Gene Structure 894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033776

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGGGCATAGCGTTGGTGTGGTGCAGTCGGCGGCGGCGGTGATAGCTTACAATCTCAGACAGTCGTCAAGTTGGTGGCAAGACATCAATGCCTCGCCGCTCTGGCAAGACCGGATCTTCCACGGCCTCGCCATTCTCTACGTCGTCGTCGCTTTCGTTGCCCTAGTTCAATTGGTTGGGACACAGGTGCGAGTGCCGGAGTACGGCTGGACCACTCAGAAGGTCTTCCAATTTCTCAATTTTATTGTCAATGCAGTTCGATCAGCAGTGTTTATTTTCCGCCGGCAAGTACAGAAGCTGCATCCAGAGATTCTCCAACATGTGTTGCTTGATATGCCAAGTCTGGCTTTCTTCACAACTTACGCGCTTCTGGTTCTGTTCTGGGCTGAAATCTACTACAAGATGCGTGCTGTTTCTACAGATGGACTAAGGCCGAGATTCTTTACAATCAACGCTGCGGTTTATCTAGTTCAGATATCTATGTGGTTGATATTATGGTGGAACCCTATCCCAGTCGTGGTCTTGTTATCTAAACTGTTCTTCGCAGGGGTCTCCTTATTTGCAGCCCTTGGATTTCTTGTGTATGGTGGAAGACTGTTTCTGATATTGCAGAGATTTCCTGTGGAATCGAAAGCAAGACGTAAGAAGCTGCATGAGGCGGCAGATCTTGATGTTTTGAATCACCCAGTTCTAAACTTGATCTATTACCTGTTGGTGGAGATATTGCCTTCTTCTTTGGTTCTTTTCATTCTGAGGAAGTTGCCTCCAAAGATTGGGATCACACAATATCAACCTATTCGCGCTCTGAAGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0008150 GO:0009705 GO:0016020 GO:0016032 GO:0019058 GO:0019079 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046786 GO:0051704 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1084

Protein Analysis

272

Amino Acids

31.07

Weight (kDa)

10.11

Isoelectric Point (pI)

44.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
THH1_TOM1-3_dom	PF06454	22 - 220	8.9e-95	THH1/TOM1/TOM3 domain
THH1_TOM1-3_dom	PF06454	220 - 267	8.7e-19	THH1/TOM1/TOM3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14530 AT1G14530 AT2G02180
fragaria_vesca	FvH4_4g36360
malus_domestica	MD13G1009600.v1.1 MD16G1008000.v1.1
prunus_persica	Prupe.1G342900_v2.0.a1
pyrus_communis	pycom13g00820 pycom16g00780
rosa_chinensis	RchiOBHm_Chr4g0446101 RchiOBHm_Chr5g0037351
rosa_laevigata	RLG00000005692 RLG00000033776
rosa_multiflora	Rmu_sc0007511.1_g000008
rosa_roxburghii	Rroxscaffold_5G00386500
rosa_rugosa	Rorug04G0367900 Rorug05G0164300
rosa_samantha	Rh4AG429400 Rh4BG438900 Rh4CG456200 Rh5AG253900 Rh5BG256000 Rh5CG289100 Rh5DG264400
rosa_wichuraiana	Rw4G036690 Rw5G023510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	773
AccBSI	CCGCTC	1 cut(s)	100
AccII	CGCG	2 cut(s)	365, 801
AciI	CCGC	7 cut(s)	32, 35, 38, 98, 280, 458, 659
AclWI	GGATC	2 cut(s)	122, 785
AfaI	GTAC	2 cut(s)	203, 291
AfiI	CCNNNNNNNGG	4 cut(s)	203, 517, 715, 773
AflIII	ACRYGT	1 cut(s)	319
AgsI	TTSAA	2 cut(s)	170, 679
AluBI	AGCT	3 cut(s)	47, 298, 649
AluI	AGCT	3 cut(s)	47, 298, 649
Alw26I	GTCTC	1 cut(s)	556
AlwI	GGATC	2 cut(s)	122, 785
AlwNI	CAGNNNCTG	1 cut(s)	298
AoxI	GGCC	2 cut(s)	124, 431
ApeKI	GCWGC	4 cut(s)	298, 455, 563, 649
Asp700I	GAANNNNTTC	1 cut(s)	224
AspLEI	GCGC	2 cut(s)	367, 803
AspS9I	GGNCC	1 cut(s)	210
AsuHPI	GGTGA	2 cut(s)	52, 674
AvaII	GGWCC	1 cut(s)	210
BbsI	GAAGAC	2 cut(s)	217, 598
BbvI	GCAGC	4 cut(s)	285, 442, 575, 636
BccI	CCATC	1 cut(s)	416
BceAI	ACGGC	2 cut(s)	139, 220
BcoDI	GTCTC	1 cut(s)	556
BfaI	CTAG	2 cut(s)	164, 467
BfmI	CTRYAG	1 cut(s)	417
BglI	GCCNNNNNGGC	1 cut(s)	103
BglII	AGATCT	1 cut(s)	664
BisI	GCNGC	8 cut(s)	33, 36, 98, 299, 456, 564, 650, 660
BlsI	GCNGC	8 cut(s)	34, 37, 99, 300, 457, 565, 651, 661
Bme18I	GGWCC	1 cut(s)	210
BmgT120I	GGNCC	1 cut(s)	210
BmiI	GGNNCC	1 cut(s)	503
BmrI	ACTGGG	2 cut(s)	506, 680
BmsI	GCATC	2 cut(s)	310, 393
BmuI	ACTGGG	2 cut(s)	506, 680
BoxI	GACNNNNGTC	1 cut(s)	64
BpiI	GAAGAC	2 cut(s)	217, 598
BsaBI	GATNNNNATC	1 cut(s)	776
BsaI	GGTCTC	1 cut(s)	556
BsaJI	CCNNGG	2 cut(s)	121, 568
BsaWI	WCCGGW	1 cut(s)	111
Bsc4I	CCNNNNNNNGG	4 cut(s)	203, 517, 715, 773
Bse118I	RCCGGY	1 cut(s)	282
Bse1I	ACTGG	2 cut(s)	512, 686
Bse8I	GATNNNNATC	1 cut(s)	776
BseDI	CCNNGG	2 cut(s)	121, 568
BseGI	GGATG	1 cut(s)	301
BseJI	GATNNNNATC	1 cut(s)	776
BseLI	CCNNNNNNNGG	4 cut(s)	203, 517, 715, 773
BseMII	CTCAG	3 cut(s)	70, 230, 743
BseNI	ACTGG	2 cut(s)	512, 686
BseXI	GCAGC	4 cut(s)	285, 442, 575, 636
BsgI	GTGCAG	1 cut(s)	44
Bsh1236I	CGCG	2 cut(s)	365, 801
BshFI	GGCC	2 cut(s)	126, 433
BsiSI	CCGG	3 cut(s)	112, 197, 283
BslFI	GGGAC	1 cut(s)	193
BslI	CCNNNNNNNGG	4 cut(s)	203, 517, 715, 773
BsmAI	GTCTC	1 cut(s)	556
BsmFI	GGGAC	1 cut(s)	193
BsnI	GGCC	2 cut(s)	126, 433
Bso31I	GGTCTC	1 cut(s)	556
Bsp143I	GATC	5 cut(s)	114, 260, 664, 699, 777
BspACI	CCGC	7 cut(s)	32, 35, 38, 98, 280, 458, 659
BspANI	GGCC	2 cut(s)	126, 433
BspCNI	CTCAG	3 cut(s)	69, 229, 744
BspFNI	CGCG	2 cut(s)	365, 801
BspLI	GGNNCC	1 cut(s)	503
BspPI	GGATC	2 cut(s)	122, 785
BspTNI	GGTCTC	1 cut(s)	556
BsrBI	CCGCTC	1 cut(s)	100
BsrFI	RCCGGY	1 cut(s)	282
BsrI	ACTGG	2 cut(s)	512, 686
BssAI	RCCGGY	1 cut(s)	282
BssECI	CCNNGG	2 cut(s)	121, 568
BssMI	GATC	5 cut(s)	114, 260, 664, 699, 777
BssT1I	CCWWGG	1 cut(s)	568
Bst4CI	ACNGT	3 cut(s)	63, 537, 597
BstC8I	GCNNGC	2 cut(s)	284, 408
BstDEI	CTNAG	4 cut(s)	56, 216, 428, 752
BstDSI	CCRYGG	1 cut(s)	121
BstF5I	GGATG	1 cut(s)	301
BstFNI	CGCG	2 cut(s)	365, 801
BstHHI	GCGC	2 cut(s)	367, 803
BstKTI	GATC	5 cut(s)	117, 263, 667, 702, 780
BstMAI	GTCTC	1 cut(s)	556
BstMBI	GATC	5 cut(s)	114, 260, 664, 699, 777
BstMWI	GCNNNNNNNGC	4 cut(s)	44, 103, 158, 334
BstNSI	RCATGY	1 cut(s)	323
BstPAI	GACNNNNGTC	1 cut(s)	64
BstSFI	CTRYAG	1 cut(s)	417
BstUI	CGCG	2 cut(s)	365, 801
BstV1I	GCAGC	4 cut(s)	285, 442, 575, 636
BstV2I	GAAGAC	2 cut(s)	217, 598
BstX2I	RGATCY	2 cut(s)	114, 664
BstYI	RGATCY	2 cut(s)	114, 664
BsuRI	GGCC	2 cut(s)	126, 433
BtgI	CCRYGG	1 cut(s)	121
BtsCI	GGATG	1 cut(s)	301
BtsI	GCAGTG	1 cut(s)	273
BtsIMutI	CAGTG	1 cut(s)	273
Cac8I	GCNNGC	2 cut(s)	284, 408
CaiI	CAGNNNCTG	1 cut(s)	298
CfoI	GCGC	2 cut(s)	367, 803
Cfr10I	RCCGGY	1 cut(s)	282
Cfr13I	GGNCC	1 cut(s)	210
Csp6I	GTAC	2 cut(s)	202, 290
CviAII	CATG	2 cut(s)	320, 653
CviJI	RGCY	9 cut(s)	47, 126, 207, 298, 347, 386, 433, 566, 649
CviKI_1	RGCY	9 cut(s)	47, 126, 207, 298, 347, 386, 433, 566, 649
CviQI	GTAC	2 cut(s)	202, 290
DdeI	CTNAG	4 cut(s)	56, 216, 428, 752
DpnI	GATC	5 cut(s)	116, 262, 666, 701, 779
DpnII	GATC	5 cut(s)	114, 260, 664, 699, 777
EciI	GGCGGA	1 cut(s)	269
Eco130I	CCWWGG	1 cut(s)	568
Eco31I	GGTCTC	1 cut(s)	556
Eco32I	GATATC	1 cut(s)	477
Eco47I	GGWCC	1 cut(s)	210
EcoRV	GATATC	1 cut(s)	477
EcoT14I	CCWWGG	1 cut(s)	568
ErhI	CCWWGG	1 cut(s)	568
FaeI	CATG	2 cut(s)	323, 656
FaiI	YATR	8 cut(s)	9, 321, 335, 482, 496, 585, 654, 814
FalI	AAGNNNNNCTT	2 cut(s)	331, 363
FaqI	GGGAC	1 cut(s)	193
FatI	CATG	2 cut(s)	319, 652
Fnu4HI	GCNGC	8 cut(s)	33, 36, 98, 299, 456, 564, 650, 660
FokI	GGATG	1 cut(s)	288
Fsp4HI	GCNGC	8 cut(s)	33, 36, 98, 299, 456, 564, 650, 660
FspBI	CTAG	2 cut(s)	164, 467
GlaI	GCGC	2 cut(s)	366, 802
GluI	GCNGC	8 cut(s)	33, 36, 98, 299, 456, 564, 650, 660
HaeIII	GGCC	2 cut(s)	126, 433
HapII	CCGG	3 cut(s)	112, 197, 283
HhaI	GCGC	2 cut(s)	367, 803
Hin1II	CATG	2 cut(s)	323, 656
Hin6I	GCGC	2 cut(s)	365, 801
HinP1I	GCGC	2 cut(s)	365, 801
HinfI	GANTC	4 cut(s)	310, 438, 626, 679
HpaII	CCGG	3 cut(s)	112, 197, 283
HphI	GGTGA	2 cut(s)	52, 674
Hpy188I	TCNGA	6 cut(s)	59, 219, 474, 603, 753, 807
Hpy188III	TCNNGA	2 cut(s)	305, 668
Hpy99I	CGWCG	3 cut(s)	146, 149, 152
HpyAV	CCTTC	3 cut(s)	214, 738, 802
HpyCH4III	ACNGT	3 cut(s)	63, 537, 597
HpyCH4IV	ACGT	2 cut(s)	141, 640
HpyCH4V	TGCA	6 cut(s)	25, 254, 301, 563, 610, 652
HpyF10VI	GCNNNNNNNGC	4 cut(s)	44, 103, 158, 334
HpyF3I	CTNAG	4 cut(s)	56, 216, 428, 752
HpySE526I	ACGT	2 cut(s)	141, 640
Hsp92II	CATG	2 cut(s)	323, 656
HspAI	GCGC	2 cut(s)	365, 801
KroI	GCCGGC	1 cut(s)	282
KroNI	GCCGGC	1 cut(s)	284
Kzo9I	GATC	5 cut(s)	114, 260, 664, 699, 777
Lsp1109I	GCAGC	4 cut(s)	285, 442, 575, 636
LweI	GCATC	2 cut(s)	310, 393
MaeI	CTAG	2 cut(s)	164, 467
MaeII	ACGT	2 cut(s)	141, 640
MalI	GATC	5 cut(s)	116, 262, 666, 701, 779
MbiI	CCGCTC	1 cut(s)	100
MboI	GATC	5 cut(s)	114, 260, 664, 699, 777
MboII	GAAGA	6 cut(s)	109, 217, 343, 532, 603, 723
MfeI	CAATTG	1 cut(s)	170
MflI	RGATCY	2 cut(s)	114, 664
MluCI	AATT	3 cut(s)	170, 230, 238
MmeI	TCCRAC	1 cut(s)	340
MnlI	CCTC	5 cut(s)	103, 137, 649, 747, 774
MroNI	GCCGGC	1 cut(s)	282
MroXI	GAANNNNTTC	1 cut(s)	224
MspI	CCGG	3 cut(s)	112, 197, 283
MunI	CAATTG	1 cut(s)	170
MvnI	CGCG	2 cut(s)	365, 801
MwoI	GCNNNNNNNGC	4 cut(s)	44, 103, 158, 334
NaeI	GCCGGC	1 cut(s)	284
NdeII	GATC	5 cut(s)	114, 260, 664, 699, 777
NgoMIV	GCCGGC	1 cut(s)	282
NlaIII	CATG	2 cut(s)	323, 656
NlaIV	GGNNCC	1 cut(s)	503
NmeAIII	GCCGAG	1 cut(s)	459
NspI	RCATGY	1 cut(s)	323
PciI	ACATGT	1 cut(s)	319
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PdiI	GCCGGC	1 cut(s)	284
PdmI	GAANNNNTTC	1 cut(s)	224
PfeI	GAWTC	4 cut(s)	310, 438, 626, 679
PflMI	CCANNNNNTGG	1 cut(s)	773
PkrI	GCNGC	8 cut(s)	34, 37, 99, 300, 457, 565, 651, 661
PscI	ACATGT	1 cut(s)	319
PshAI	GACNNNNGTC	1 cut(s)	64
PspN4I	GGNNCC	1 cut(s)	503
PspPI	GGNCC	1 cut(s)	210
PstNI	CAGNNNCTG	1 cut(s)	298
PsuI	RGATCY	2 cut(s)	114, 664
RsaI	GTAC	2 cut(s)	203, 291
RsaNI	GTAC	2 cut(s)	202, 290
SatI	GCNGC	8 cut(s)	33, 36, 98, 299, 456, 564, 650, 660
Sau3AI	GATC	5 cut(s)	114, 260, 664, 699, 777
Sau96I	GGNCC	1 cut(s)	210
SfaNI	GCATC	2 cut(s)	310, 393
SfcI	CTRYAG	1 cut(s)	417
SinI	GGWCC	1 cut(s)	210
Sse9I	AATT	3 cut(s)	170, 230, 238
SsiI	CCGC	7 cut(s)	32, 35, 38, 98, 280, 458, 659
SspMI	CTAG	2 cut(s)	164, 467
StyI	CCWWGG	1 cut(s)	568
TaaI	ACNGT	3 cut(s)	63, 537, 597
TaiI	ACGT	2 cut(s)	144, 643
TaqI	TCGA	2 cut(s)	259, 629
TasI	AATT	3 cut(s)	170, 230, 238
TatI	WGTACW	1 cut(s)	289
TauI	GCSGC	4 cut(s)	35, 38, 100, 662
TfiI	GAWTC	4 cut(s)	310, 438, 626, 679
TscAI	CASTG	1 cut(s)	273
TseI	GCWGC	4 cut(s)	298, 455, 563, 649
TspDTI	ATGAA	1 cut(s)	736
TspRI	CASTG	1 cut(s)	273
Van91I	CCANNNNNTGG	1 cut(s)	773
VpaK11BI	GGWCC	1 cut(s)	210
XceI	RCATGY	1 cut(s)	323
XmnI	GAANNNNTTC	1 cut(s)	224
XspI	CTAG	2 cut(s)	164, 467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.