Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0006559

Physical Location & Seq

Genomic Coordinates Reverse (-)

466066 .. 470621

Gene Structure 4556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g00780.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGCTCGTAGCGGCGGCGGCGGCGGAGTCGGGGTGATGGAGTCGGCGGTGATAGCGTACAACCTGAGAGACGCATCGAGTTGGTGGCACGACATCAATGCCTCCCCTATTTGGCAAGACCGCATATTTCATGCCCTTGCTATTCTCTACGGTCTCGTCGCTATCGTTGCCCTGGTTCAATTGATTCGGATACAATTGAGAGTGCCGGAGTACGGTTGGACCACGCAGAAAGTATTCCACTTTCTTAATTTTGTTGTCAATGGAGTTCGATCAGCAGTGTTTGTGTTCCGCCGGCAAGTGCAGAAGCTGCATCCAGAGATTGTCCGACATATCTTGCTCGATATGCCGAGTCTTGCCTTCTTCACTACCTATGCGCTCTTGGTTCTTTTCTGGGCTGAAATTTACTATCAGGCACGCACTGTTTCTACAGATGGACTGAGGCCAAGCTTCTTGACTGTCAATGCTGTGGTTTATGTGATTCAGATTGCTATGTGGTTGATATTATGGTGGAAGCCTATCCCAGTTCTGCTCACCTTATCTAAGATGTTCTTTGCAGGTGTGTCATTATTCGCAGCCCTTGGGTTTCTTCTATATGGTGGAAGACTCTTCTTGATGTTGCAGAGATTTCCTGTAGAATCAAAAGGACGACGGAAGAAGCTGCAGGAGGTTGGCTATGTGACAACCATATGTTTTGCATGTTTCCTTGTCAGATGCATAATGATGTGCTTCAACGCATTCGATCAAGCTGCTGACCTTGATGTTTTGAGTCACCCGGTTCTAAACTTTATATATTACCTGTTGGTGGAGATATTGCCCTCTTCTTTGGTCCTTTTCATTTTGAGGAAGTTGCCTCCAAAGCGTGGGATCACACAATATCACCCGATTCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0008150 GO:0009705 GO:0016020 GO:0016032 GO:0019058 GO:0019079 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046786 GO:0051704 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1084

Protein Analysis

297

Amino Acids

33.9

Weight (kDa)

9.82

Isoelectric Point (pI)

46.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14530 AT1G14530 AT2G02180
fragaria_vesca	FvH4_4g36360
malus_domestica	MD13G1009600.v1.1 MD16G1008000.v1.1
prunus_persica	Prupe.1G342900_v2.0.a1
pyrus_communis	pycom13g00820 pycom16g00780
rosa_chinensis	RchiOBHm_Chr4g0446101 RchiOBHm_Chr5g0037351
rosa_laevigata	RLG00000005692 RLG00000033776
rosa_multiflora	Rmu_sc0007511.1_g000008
rosa_roxburghii	Rroxscaffold_5G00386500
rosa_rugosa	Rorug04G0367900 Rorug05G0164300
rosa_samantha	Rh4AG429400 Rh4BG438900 Rh4CG456200 Rh5AG253900 Rh5BG256000 Rh5CG289100 Rh5DG264400
rosa_wichuraiana	Rw4G036690 Rw5G023510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	545
Acc36I	ACCTGC	1 cut(s)	545
AccB7I	CCANNNNNTGG	1 cut(s)	860
AciI	CCGC	8 cut(s)	12, 15, 18, 21, 24, 47, 121, 289
AclWI	GGATC	1 cut(s)	872
AcsI	RAATTY	1 cut(s)	399
AfaI	GTAC	2 cut(s)	59, 212
AfiI	CCNNNNNNNGG	4 cut(s)	111, 212, 802, 860
AgsI	TTSAA	2 cut(s)	179, 730
AjnI	CCWGG	1 cut(s)	171
AluBI	AGCT	4 cut(s)	307, 447, 658, 746
AluI	AGCT	4 cut(s)	307, 447, 658, 746
Alw26I	GTCTC	2 cut(s)	63, 158
AlwI	GGATC	1 cut(s)	872
AlwNI	CAGNNNCTG	1 cut(s)	307
AoxI	GGCC	1 cut(s)	440
ApeKI	GCWGC	4 cut(s)	307, 572, 658, 746
ApoI	RAATTY	1 cut(s)	399
Asp700I	GAANNNNTTC	1 cut(s)	233
AspLEI	GCGC	1 cut(s)	376
AspS9I	GGNCC	2 cut(s)	219, 826
AsuC2I	CCSGG	1 cut(s)	773
AsuHPI	GGTGA	5 cut(s)	46, 61, 523, 761, 869
AvaII	GGWCC	2 cut(s)	219, 826
BbsI	GAAGAC	1 cut(s)	607
BbvI	GCAGC	4 cut(s)	294, 584, 645, 733
BccI	CCATC	2 cut(s)	31, 425
BcgI	CGANNNNNNTGC	4 cut(s)	80, 114, 728, 762
BciT130I	CCWGG	1 cut(s)	173
BciVI	GTATCC	1 cut(s)	183
BcnI	CCSGG	1 cut(s)	773
BcoDI	GTCTC	2 cut(s)	63, 158
BfmI	CTRYAG	3 cut(s)	426, 630, 659
BfuAI	ACCTGC	1 cut(s)	545
BfuI	GTATCC	1 cut(s)	183
BisI	GCNGC	8 cut(s)	13, 16, 19, 22, 308, 573, 659, 747
BlsI	GCNGC	8 cut(s)	14, 17, 20, 23, 309, 574, 660, 748
Bme1390I	CCNGG	2 cut(s)	173, 773
Bme18I	GGWCC	2 cut(s)	219, 826
BmgT120I	GGNCC	2 cut(s)	219, 826
BmrFI	CCNGG	2 cut(s)	173, 773
BmrI	ACTGGG	1 cut(s)	515
BmsI	GCATC	3 cut(s)	83, 319, 701
BmuI	ACTGGG	1 cut(s)	515
BpiI	GAAGAC	1 cut(s)	607
BpuMI	CCSGG	1 cut(s)	773
BsaI	GGTCTC	1 cut(s)	158
BsaJI	CCNNGG	2 cut(s)	171, 577
BsaXI	ACNNNNNCTCC	2 cut(s)	18, 48
Bsc4I	CCNNNNNNNGG	4 cut(s)	111, 212, 802, 860
Bse118I	RCCGGY	1 cut(s)	291
Bse1I	ACTGG	1 cut(s)	521
BseBI	CCWGG	1 cut(s)	173
BseDI	CCNNGG	2 cut(s)	171, 577
BseGI	GGATG	1 cut(s)	310
BseLI	CCNNNNNNNGG	4 cut(s)	111, 212, 802, 860
BseMII	CTCAG	2 cut(s)	56, 428
BseNI	ACTGG	1 cut(s)	521
BseXI	GCAGC	4 cut(s)	294, 584, 645, 733
BsgI	GTGCAG	1 cut(s)	320
BshFI	GGCC	1 cut(s)	442
BsiSI	CCGG	3 cut(s)	206, 292, 773
BslI	CCNNNNNNNGG	4 cut(s)	111, 212, 802, 860
BsmAI	GTCTC	2 cut(s)	63, 158
BsmBI	CGTCTC	1 cut(s)	63
BsmI	GAATGC	1 cut(s)	734
BsnI	GGCC	1 cut(s)	442
Bso31I	GGTCTC	1 cut(s)	158
Bsp143I	GATC	3 cut(s)	269, 739, 864
BspACI	CCGC	8 cut(s)	12, 15, 18, 21, 24, 47, 121, 289
BspANI	GGCC	1 cut(s)	442
BspCNI	CTCAG	2 cut(s)	57, 429
BspMAI	CTGCAG	1 cut(s)	663
BspMI	ACCTGC	1 cut(s)	545
BspPI	GGATC	1 cut(s)	872
BspTNI	GGTCTC	1 cut(s)	158
BsrFI	RCCGGY	1 cut(s)	291
BsrI	ACTGG	1 cut(s)	521
BssAI	RCCGGY	1 cut(s)	291
BssECI	CCNNGG	2 cut(s)	171, 577
BssMI	GATC	3 cut(s)	269, 739, 864
BssT1I	CCWWGG	1 cut(s)	577
Bst2UI	CCWGG	1 cut(s)	173
Bst4CI	ACNGT	4 cut(s)	152, 215, 421, 457
Bst6I	CTCTTC	2 cut(s)	611, 823
BstAPI	GCANNNNNTGC	1 cut(s)	307
BstC8I	GCNNGC	2 cut(s)	293, 415
BstDEI	CTNAG	3 cut(s)	65, 437, 540
BstF5I	GGATG	1 cut(s)	310
BstHHI	GCGC	1 cut(s)	376
BstKTI	GATC	3 cut(s)	272, 742, 867
BstMAI	GTCTC	2 cut(s)	63, 158
BstMBI	GATC	3 cut(s)	269, 739, 864
BstMWI	GCNNNNNNNGC	7 cut(s)	18, 21, 53, 167, 307, 343, 856
BstNI	CCWGG	1 cut(s)	173
BstNSI	RCATGY	1 cut(s)	699
BstSCI	CCNGG	2 cut(s)	171, 771
BstSFI	CTRYAG	3 cut(s)	426, 630, 659
BstV1I	GCAGC	4 cut(s)	294, 584, 645, 733
BstV2I	GAAGAC	1 cut(s)	607
BsuI	GTATCC	1 cut(s)	183
BsuRI	GGCC	1 cut(s)	442
BtsCI	GGATG	1 cut(s)	310
BtsI	GCAGTG	1 cut(s)	282
BtsIMutI	CAGTG	2 cut(s)	282, 417
BveI	ACCTGC	1 cut(s)	545
Cac8I	GCNNGC	2 cut(s)	293, 415
CaiI	CAGNNNCTG	1 cut(s)	307
CfoI	GCGC	1 cut(s)	376
Cfr10I	RCCGGY	1 cut(s)	291
Cfr13I	GGNCC	2 cut(s)	219, 826
CseI	GACGC	1 cut(s)	80
Csp6I	GTAC	2 cut(s)	58, 211
CviAII	CATG	2 cut(s)	131, 696
CviQI	GTAC	2 cut(s)	58, 211
DdeI	CTNAG	3 cut(s)	65, 437, 540
DpnI	GATC	3 cut(s)	271, 741, 866
DpnII	GATC	3 cut(s)	269, 739, 864
Eam1104I	CTCTTC	2 cut(s)	611, 823
EarI	CTCTTC	2 cut(s)	611, 823
EciI	GGCGGA	2 cut(s)	39, 278
Eco130I	CCWWGG	1 cut(s)	577
Eco31I	GGTCTC	1 cut(s)	158
Eco47I	GGWCC	2 cut(s)	219, 826
EcoRII	CCWGG	1 cut(s)	171
EcoT14I	CCWWGG	1 cut(s)	577
EcoT22I	ATGCAT	1 cut(s)	716
ErhI	CCWWGG	1 cut(s)	577
Esp3I	CGTCTC	1 cut(s)	63
FaeI	CATG	2 cut(s)	134, 699
FalI	AAGNNNNNCTT	2 cut(s)	533, 565
FatI	CATG	2 cut(s)	130, 695
FauNDI	CATATG	1 cut(s)	686
Fnu4HI	GCNGC	8 cut(s)	13, 16, 19, 22, 308, 573, 659, 747
FokI	GGATG	1 cut(s)	297
Fsp4HI	GCNGC	8 cut(s)	13, 16, 19, 22, 308, 573, 659, 747
GlaI	GCGC	1 cut(s)	375
GluI	GCNGC	8 cut(s)	13, 16, 19, 22, 308, 573, 659, 747
HaeIII	GGCC	1 cut(s)	442
HapII	CCGG	3 cut(s)	206, 292, 773
HgaI	GACGC	1 cut(s)	80
HhaI	GCGC	1 cut(s)	376
Hin1II	CATG	2 cut(s)	134, 699
Hin6I	GCGC	1 cut(s)	374
HinP1I	GCGC	1 cut(s)	374
HindIII	AAGCTT	1 cut(s)	445
HinfI	GANTC	9 cut(s)	27, 41, 184, 349, 478, 603, 635, 766, 883
HpaII	CCGG	3 cut(s)	206, 292, 773
HphI	GGTGA	5 cut(s)	46, 61, 523, 761, 869
Hpy188I	TCNGA	4 cut(s)	189, 326, 483, 710
Hpy188III	TCNNGA	3 cut(s)	314, 451, 610
Hpy99I	CGWCG	2 cut(s)	161, 651
HpyAV	CCTTC	1 cut(s)	367
HpyCH4III	ACNGT	4 cut(s)	152, 215, 421, 457
HpyCH4V	TGCA	7 cut(s)	301, 310, 554, 619, 661, 695, 714
HpyF10VI	GCNNNNNNNGC	7 cut(s)	18, 21, 53, 167, 307, 343, 856
HpyF3I	CTNAG	3 cut(s)	65, 437, 540
Hsp92II	CATG	2 cut(s)	134, 699
HspAI	GCGC	1 cut(s)	374
KroI	GCCGGC	1 cut(s)	291
KroNI	GCCGGC	1 cut(s)	293
Kzo9I	GATC	3 cut(s)	269, 739, 864
Lsp1109I	GCAGC	4 cut(s)	294, 584, 645, 733
LweI	GCATC	3 cut(s)	83, 319, 701
MaeIII	GTNAC	2 cut(s)	676, 767
MalI	GATC	3 cut(s)	271, 741, 866
MboI	GATC	3 cut(s)	269, 739, 864
MboII	GAAGA	6 cut(s)	352, 578, 598, 612, 664, 810
MfeI	CAATTG	2 cut(s)	179, 194
MluCI	AATT	4 cut(s)	179, 194, 247, 399
MlyI	GAGTC	5 cut(s)	36, 50, 358, 597, 775
MmeI	TCCRAC	2 cut(s)	197, 349
MnlI	CCTC	6 cut(s)	112, 432, 658, 826, 834, 861
Mph1103I	ATGCAT	1 cut(s)	716
MroNI	GCCGGC	1 cut(s)	291
MroXI	GAANNNNTTC	1 cut(s)	233
MseI	TTAA	1 cut(s)	246
MslI	CAYNNNNRTG	1 cut(s)	719
MspI	CCGG	3 cut(s)	206, 292, 773
MspR9I	CCNGG	2 cut(s)	173, 773
MunI	CAATTG	2 cut(s)	179, 194
Mva1269I	GAATGC	1 cut(s)	734
MvaI	CCWGG	1 cut(s)	173
MwoI	GCNNNNNNNGC	7 cut(s)	18, 21, 53, 167, 307, 343, 856
NaeI	GCCGGC	1 cut(s)	293
NciI	CCSGG	1 cut(s)	773
NdeI	CATATG	1 cut(s)	686
NdeII	GATC	3 cut(s)	269, 739, 864
NgoMIV	GCCGGC	1 cut(s)	291
NlaIII	CATG	2 cut(s)	134, 699
NmeAIII	GCCGAG	1 cut(s)	372
NmuCI	GTSAC	2 cut(s)	676, 767
NsiI	ATGCAT	1 cut(s)	716
NspI	RCATGY	1 cut(s)	699
PaqCI	CACCTGC	1 cut(s)	545
PcsI	WCGNNNNNNNCGW	1 cut(s)	162
PctI	GAATGC	1 cut(s)	734
PdiI	GCCGGC	1 cut(s)	293
PdmI	GAANNNNTTC	1 cut(s)	233
PfeI	GAWTC	4 cut(s)	184, 478, 635, 883
PflMI	CCANNNNNTGG	1 cut(s)	860
PkrI	GCNGC	8 cut(s)	14, 17, 20, 23, 309, 574, 660, 748
PleI	GAGTC	5 cut(s)	35, 49, 357, 597, 774
PpsI	GAGTC	5 cut(s)	35, 49, 357, 597, 774
Psp6I	CCWGG	1 cut(s)	171
PspGI	CCWGG	1 cut(s)	171
PspPI	GGNCC	2 cut(s)	219, 826
PstI	CTGCAG	1 cut(s)	663
PstNI	CAGNNNCTG	1 cut(s)	307
RsaI	GTAC	2 cut(s)	59, 212
RsaNI	GTAC	2 cut(s)	58, 211
RseI	CAYNNNNRTG	1 cut(s)	719
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	8 cut(s)	13, 16, 19, 22, 308, 573, 659, 747
Sau3AI	GATC	3 cut(s)	269, 739, 864
Sau96I	GGNCC	2 cut(s)	219, 826
SchI	GAGTC	5 cut(s)	36, 50, 358, 597, 775
ScrFI	CCNGG	2 cut(s)	173, 773
SfaNI	GCATC	3 cut(s)	83, 319, 701
SfcI	CTRYAG	3 cut(s)	426, 630, 659
SinI	GGWCC	2 cut(s)	219, 826
SmiMI	CAYNNNNRTG	1 cut(s)	719
Sse9I	AATT	4 cut(s)	179, 194, 247, 399
SsiI	CCGC	8 cut(s)	12, 15, 18, 21, 24, 47, 121, 289
StyD4I	CCNGG	2 cut(s)	171, 771
StyI	CCWWGG	1 cut(s)	577
TaaI	ACNGT	4 cut(s)	152, 215, 421, 457
TaqI	TCGA	4 cut(s)	77, 268, 339, 738
TasI	AATT	4 cut(s)	179, 194, 247, 399
TauI	GCSGC	4 cut(s)	15, 18, 21, 24
TfiI	GAWTC	4 cut(s)	184, 478, 635, 883
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TscAI	CASTG	2 cut(s)	282, 424
TseFI	GTSAC	2 cut(s)	676, 767
TseI	GCWGC	4 cut(s)	307, 572, 658, 746
Tsp45I	GTSAC	2 cut(s)	676, 767
TspDTI	ATGAA	2 cut(s)	119, 823
TspGWI	ACGGA	1 cut(s)	664
TspRI	CASTG	2 cut(s)	282, 424
Van91I	CCANNNNNTGG	1 cut(s)	860
VpaK11BI	GGWCC	2 cut(s)	219, 826
XapI	RAATTY	1 cut(s)	399
XceI	RCATGY	1 cut(s)	699
XmnI	GAANNNNTTC	1 cut(s)	233
Zsp2I	ATGCAT	1 cut(s)	716

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.