Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006076

Physical Location & Seq

Genomic Coordinates Reverse (-)

4974021 .. 4975705

Gene Structure 1685 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G14540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGCGATCTTCAAGATTCTTGTATTGTTGTTGAGTTTGTGTTGTTTCAGTCAAGCACAACTTTCTCCTACTTTCTACGACCAAACTTGTCAAAACGCTCTCTCCACCATCCGATCTTCAATCCGAACCGCAATCAGCCGTGAACGTAGAATGGCTGCTTCTCTCATCCGTCTCCATTTCCACGACTGCTTCGTTAATGGTTGTGATGCATCGGTCATGCTCGTGGCAACTCCCACCATGGAGAGTGAGAGAGATTCATTGGCAAATTTTCAATCGGCAAGAGGATTTGAAGTTATCGATCAAGCCAAATCAGCTGTAGAGAGTGTTTGTCCCGGCGTTGTTTCTTGCGCTGATATTATTGCCGTTGCTGCTAGAGATGCTTCTGAATATGTCGGAGGTCCAAGATATGATGTGAAGGTTGGTCGAAGAGATTCCACCAACGCGTTTAGGGCTATCGCAGACAGGGATCTCCCCAACTTCAGGGCTAGCCTCAACGATCTCTCTGAACTCTTCCTTCGAAAAGGACTCAACACAAGAGACCTCGTCGCTCTCTCAGGAGCTCACACATTAGGGCAAGCTCAATGCCTCACGTTCAAAGGTAGGCTTTACGATAACTCGAGTGACATTGACGCGGGATTCTCCAGTACCCGTAAGCGTCGTTGTCCGGTCAACGGTGGAGATACGACTCTAGCACCTTTAGATCAAGTGACACCAAACTCGTTCGACAATAACTATTACAGAAACTTGATGCAGAAGAAAGGACTTTTAGAAAGCGATCAAGTTTTGTTCGGAACCGGAGCTTCTACAGATAGTATAGTGACGGAGTACAGCAGAAATCCATCACGATTTGCGTCTGATTTCTCAGCTGCAATGATCAAAATGGGAGATATTCAGACACTCACTGGTTCAGATGGACAAATCCGAAGAATCTGCAGTGCCGTTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0006950 GO:0008150 GO:0009628 GO:0009987 GO:0033554 GO:0036293 GO:0036294 GO:0042221 GO:0050896 GO:0051716 GO:0070482 GO:0070887 GO:0071453 GO:0071456

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

315

Amino Acids

34.41

Weight (kDa)

8.02

Isoelectric Point (pI)

35.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	37 - 279	4.1e-81	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006076)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14540 AT1G14550
fragaria_vesca	FvH4_2g30540 FvH4_4g13860 FvH4_4g36130
malus_domestica	MD13G1011000.v1.1 MD13G1011200.v1.1
prunus_persica	Prupe.1G341900_v2.0.a1
pyrus_communis	pycom13g00920
rosa_chinensis	RchiOBHm_Chr4g0445821 RchiOBHm_Chr4g0445871
rosa_laevigata	RLG00000005706 RLG00000005707
rosa_multiflora	Rmu_co8195238.1_g000001 Rmu_sc0000961.1_g000005 Rmu_sc0000961.1_g000010
rosa_roxburghii	Rroxscaffold_5G00386290 Rroxscaffold_5G00386310
rosa_rugosa	Rorug04G0365400
rosa_samantha	Rh4AG426900 Rh4AG427100 Rh4BG437300 Rh4CG454100 Rh4DG435200 Rh4DG435400
rosa_wichuraiana	Rw4G036540 Rw4G036570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	443, 632
AciI	CCGC	2 cut(s)	129, 632
AclWI	GGATC	1 cut(s)	474
AcsI	RAATTY	1 cut(s)	265
AcuI	CTGAAG	1 cut(s)	463
AfaI	GTAC	2 cut(s)	646, 827
AfiI	CCNNNNNNNGG	2 cut(s)	480, 671
AflIII	ACRYGT	1 cut(s)	441
AgsI	TTSAA	5 cut(s)	13, 120, 272, 290, 595
AluBI	AGCT	5 cut(s)	314, 560, 578, 800, 866
AluI	AGCT	5 cut(s)	314, 560, 578, 800, 866
Alw21I	GWGCWC	1 cut(s)	562
Alw26I	GTCTC	2 cut(s)	176, 531
AlwI	GGATC	1 cut(s)	474
Ama87I	CYCGRG	1 cut(s)	616
ApeKI	GCWGC	3 cut(s)	155, 368, 866
ApoI	RAATTY	1 cut(s)	265
Asp700I	GAANNNNTTC	1 cut(s)	430
AspLEI	GCGC	1 cut(s)	350
AspS9I	GGNCC	1 cut(s)	398
AsuC2I	CCSGG	1 cut(s)	333
AsuII	TTCGAA	1 cut(s)	517
AsuNHI	GCTAGC	1 cut(s)	485
AvaI	CYCGRG	1 cut(s)	616
AvaII	GGWCC	1 cut(s)	398
BanII	GRGCYC	1 cut(s)	562
BauI	CACGAG	1 cut(s)	221
Bbv12I	GWGCWC	1 cut(s)	562
BbvI	GCAGC	3 cut(s)	142, 355, 853
BccI	CCATC	3 cut(s)	116, 847, 905
BceAI	ACGGC	3 cut(s)	123, 347, 923
BcgI	CGANNNNNNTGC	2 cut(s)	912, 946
BclI	TGATCA	1 cut(s)	873
BcnI	CCSGG	1 cut(s)	333
BcoDI	GTCTC	2 cut(s)	176, 531
BfaI	CTAG	3 cut(s)	372, 486, 689
BfmI	CTRYAG	3 cut(s)	315, 804, 931
BisI	GCNGC	3 cut(s)	156, 369, 867
BlsI	GCNGC	3 cut(s)	157, 370, 868
Bme1390I	CCNGG	1 cut(s)	333
Bme18I	GGWCC	1 cut(s)	398
BmeT110I	CYCGRG	1 cut(s)	616
BmgT120I	GGNCC	1 cut(s)	398
BmiI	GGNNCC	1 cut(s)	793
BmrFI	CCNGG	1 cut(s)	333
BmsI	GCATC	4 cut(s)	196, 218, 367, 738
BmtI	GCTAGC	1 cut(s)	489
BpmI	CTGGAG	1 cut(s)	625
Bpu14I	TTCGAA	1 cut(s)	517
BpuMI	CCSGG	1 cut(s)	333
Bsa29I	ATCGAT	1 cut(s)	297
BsaI	GGTCTC	1 cut(s)	531
BsaJI	CCNNGG	1 cut(s)	237
BsaWI	WCCGGW	2 cut(s)	664, 794
BsaXI	ACNNNNNCTCC	2 cut(s)	86, 116
Bsc4I	CCNNNNNNNGG	2 cut(s)	480, 671
Bse1I	ACTGG	2 cut(s)	642, 907
Bse3DI	GCAATG	1 cut(s)	876
BseCI	ATCGAT	1 cut(s)	297
BseDI	CCNNGG	1 cut(s)	237
BseGI	GGATG	2 cut(s)	108, 165
BseLI	CCNNNNNNNGG	2 cut(s)	480, 671
BseMI	GCAATG	1 cut(s)	876
BseMII	CTCAG	2 cut(s)	567, 876
BseNI	ACTGG	2 cut(s)	642, 907
BseXI	GCAGC	3 cut(s)	142, 355, 853
Bsh1236I	CGCG	2 cut(s)	443, 632
BshVI	ATCGAT	1 cut(s)	297
BsiHKAI	GWGCWC	1 cut(s)	562
BsiHKCI	CYCGRG	1 cut(s)	616
BsiSI	CCGG	3 cut(s)	333, 665, 795
BslFI	GGGAC	1 cut(s)	315
BslI	CCNNNNNNNGG	2 cut(s)	480, 671
BsmAI	GTCTC	2 cut(s)	176, 531
BsmBI	CGTCTC	1 cut(s)	176
BsmFI	GGGAC	1 cut(s)	315
Bso31I	GGTCTC	1 cut(s)	531
BsoBI	CYCGRG	1 cut(s)	616
Bsp119I	TTCGAA	1 cut(s)	517
Bsp1286I	GDGCHC	1 cut(s)	562
Bsp143I	GATC	8 cut(s)	6, 113, 298, 466, 496, 700, 775, 873
Bsp19I	CCATGG	1 cut(s)	237
BspACI	CCGC	2 cut(s)	129, 632
BspCNI	CTCAG	2 cut(s)	566, 875
BspDI	ATCGAT	1 cut(s)	297
BspFNI	CGCG	2 cut(s)	443, 632
BspLI	GGNNCC	1 cut(s)	793
BspMAI	CTGCAG	1 cut(s)	935
BspOI	GCTAGC	1 cut(s)	489
BspPI	GGATC	1 cut(s)	474
BspT104I	TTCGAA	1 cut(s)	517
BspTNI	GGTCTC	1 cut(s)	531
BsrDI	GCAATG	1 cut(s)	876
BsrI	ACTGG	2 cut(s)	642, 907
BssECI	CCNNGG	1 cut(s)	237
BssMI	GATC	8 cut(s)	6, 113, 298, 466, 496, 700, 775, 873
BssSI	CACGAG	1 cut(s)	221
BssT1I	CCWWGG	1 cut(s)	237
Bst2BI	CACGAG	1 cut(s)	221
Bst4CI	ACNGT	1 cut(s)	674
Bst6I	CTCTTC	2 cut(s)	421, 515
BstBI	TTCGAA	1 cut(s)	517
BstC8I	GCNNGC	2 cut(s)	487, 576
BstDEI	CTNAG	2 cut(s)	553, 862
BstDSI	CCRYGG	1 cut(s)	237
BstF5I	GGATG	2 cut(s)	108, 165
BstFNI	CGCG	2 cut(s)	443, 632
BstHHI	GCGC	1 cut(s)	350
BstKTI	GATC	8 cut(s)	9, 116, 301, 469, 499, 703, 778, 876
BstMAI	GTCTC	2 cut(s)	176, 531
BstMBI	GATC	8 cut(s)	6, 113, 298, 466, 496, 700, 775, 873
BstMWI	GCNNNNNNNGC	4 cut(s)	311, 368, 377, 449
BstSCI	CCNGG	1 cut(s)	331
BstSFI	CTRYAG	3 cut(s)	315, 804, 931
BstUI	CGCG	2 cut(s)	443, 632
BstV1I	GCAGC	3 cut(s)	142, 355, 853
BstX2I	RGATCY	1 cut(s)	466
BstYI	RGATCY	1 cut(s)	466
Bsu15I	ATCGAT	1 cut(s)	297
BsuTUI	ATCGAT	1 cut(s)	297
BtgI	CCRYGG	1 cut(s)	237
BtsCI	GGATG	2 cut(s)	108, 165
BtsI	GCAGTG	1 cut(s)	940
BtsIMutI	CAGTG	2 cut(s)	900, 940
Cac8I	GCNNGC	2 cut(s)	487, 576
CfoI	GCGC	1 cut(s)	350
Cfr13I	GGNCC	1 cut(s)	398
ClaI	ATCGAT	1 cut(s)	297
CseI	GACGC	3 cut(s)	638, 644, 840
Csp6I	GTAC	2 cut(s)	645, 826
CviAII	CATG	2 cut(s)	217, 238
CviQI	GTAC	2 cut(s)	645, 826
DdeI	CTNAG	2 cut(s)	553, 862
DpnI	GATC	8 cut(s)	8, 115, 300, 468, 498, 702, 777, 875
DpnII	GATC	8 cut(s)	6, 113, 298, 466, 496, 700, 775, 873
Eam1104I	CTCTTC	2 cut(s)	421, 515
EarI	CTCTTC	2 cut(s)	421, 515
Ecl136II	GAGCTC	1 cut(s)	560
Eco130I	CCWWGG	1 cut(s)	237
Eco24I	GRGCYC	1 cut(s)	562
Eco31I	GGTCTC	1 cut(s)	531
Eco47I	GGWCC	1 cut(s)	398
Eco53kI	GAGCTC	1 cut(s)	560
Eco57I	CTGAAG	1 cut(s)	463
Eco88I	CYCGRG	1 cut(s)	616
EcoICRI	GAGCTC	1 cut(s)	560
EcoT14I	CCWWGG	1 cut(s)	237
EcoT22I	ATGCAT	1 cut(s)	211
EcoT38I	GRGCYC	1 cut(s)	562
ErhI	CCWWGG	1 cut(s)	237
Esp3I	CGTCTC	1 cut(s)	176
FaeI	CATG	2 cut(s)	220, 241
FaiI	YATR	5 cut(s)	218, 239, 390, 408, 815
FalI	AAGNNNNNCTT	4 cut(s)	45, 77, 588, 620
FaqI	GGGAC	1 cut(s)	315
FatI	CATG	2 cut(s)	216, 237
FauI	CCCGC	1 cut(s)	625
FbaI	TGATCA	1 cut(s)	873
Fnu4HI	GCNGC	3 cut(s)	156, 369, 867
FokI	GGATG	2 cut(s)	95, 152
FriOI	GRGCYC	1 cut(s)	562
Fsp4HI	GCNGC	3 cut(s)	156, 369, 867
FspBI	CTAG	3 cut(s)	372, 486, 689
GlaI	GCGC	1 cut(s)	349
GluI	GCNGC	3 cut(s)	156, 369, 867
GsuI	CTGGAG	1 cut(s)	625
HapII	CCGG	3 cut(s)	333, 665, 795
HgaI	GACGC	3 cut(s)	638, 644, 840
HhaI	GCGC	1 cut(s)	350
Hin1II	CATG	2 cut(s)	220, 241
Hin6I	GCGC	1 cut(s)	348
HinP1I	GCGC	1 cut(s)	348
HincII	GTYRAC	1 cut(s)	670
HindII	GTYRAC	1 cut(s)	670
HinfI	GANTC	7 cut(s)	16, 254, 431, 525, 636, 685, 927
HpaII	CCGG	3 cut(s)	333, 665, 795
Hpy166II	GTNNAC	2 cut(s)	143, 670
Hpy188III	TCNNGA	3 cut(s)	13, 555, 843
Hpy8I	GTNNAC	2 cut(s)	143, 670
Hpy99I	CGWCG	2 cut(s)	548, 660
HpyAV	CCTTC	2 cut(s)	409, 524
HpyCH4III	ACNGT	1 cut(s)	674
HpyCH4IV	ACGT	2 cut(s)	145, 590
HpyCH4V	TGCA	4 cut(s)	209, 751, 869, 933
HpyF10VI	GCNNNNNNNGC	4 cut(s)	311, 368, 377, 449
HpyF3I	CTNAG	2 cut(s)	553, 862
HpySE526I	ACGT	2 cut(s)	145, 590
Hsp92II	CATG	2 cut(s)	220, 241
HspAI	GCGC	1 cut(s)	348
Ksp22I	TGATCA	1 cut(s)	873
Kzo9I	GATC	8 cut(s)	6, 113, 298, 466, 496, 700, 775, 873
LmnI	GCTCC	2 cut(s)	557, 797
LpnPI	CCDG	8 cut(s)	346, 448, 466, 540, 655, 678, 808, 888
Lsp1109I	GCAGC	3 cut(s)	142, 355, 853
LweI	GCATC	4 cut(s)	196, 218, 367, 738
MaeI	CTAG	3 cut(s)	372, 486, 689
MaeII	ACGT	2 cut(s)	145, 590
MaeIII	GTNAC	3 cut(s)	620, 706, 817
MalI	GATC	8 cut(s)	8, 115, 300, 468, 498, 702, 777, 875
MboI	GATC	8 cut(s)	6, 113, 298, 466, 496, 700, 775, 873
MboII	GAAGA	5 cut(s)	108, 438, 502, 766, 936
MflI	RGATCY	1 cut(s)	466
MhlI	GDGCHC	1 cut(s)	562
MluCI	AATT	2 cut(s)	265, 943
MluI	ACGCGT	1 cut(s)	441
MlyI	GAGTC	2 cut(s)	519, 679
MmeI	TCCRAC	1 cut(s)	373
MnlI	CCTC	5 cut(s)	275, 389, 500, 551, 596
Mph1103I	ATGCAT	1 cut(s)	211
MroXI	GAANNNNTTC	1 cut(s)	430
MseI	TTAA	3 cut(s)	195, 942, 946
MslI	CAYNNNNRTG	1 cut(s)	221
MspA1I	CMGCKG	2 cut(s)	314, 866
MspI	CCGG	3 cut(s)	333, 665, 795
MspR9I	CCNGG	1 cut(s)	333
MvnI	CGCG	2 cut(s)	443, 632
MwoI	GCNNNNNNNGC	4 cut(s)	311, 368, 377, 449
NciI	CCSGG	1 cut(s)	333
NcoI	CCATGG	1 cut(s)	237
NdeII	GATC	8 cut(s)	6, 113, 298, 466, 496, 700, 775, 873
NheI	GCTAGC	1 cut(s)	485
NlaIII	CATG	2 cut(s)	220, 241
NlaIV	GGNNCC	1 cut(s)	793
NmuCI	GTSAC	3 cut(s)	620, 706, 817
NsiI	ATGCAT	1 cut(s)	211
NspV	TTCGAA	1 cut(s)	517
PacI	TTAATTAA	1 cut(s)	946
PaeR7I	CTCGAG	1 cut(s)	616
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PdmI	GAANNNNTTC	1 cut(s)	430
PfeI	GAWTC	5 cut(s)	16, 254, 431, 636, 927
PflFI	GACNNNGTC	1 cut(s)	542
PkrI	GCNGC	3 cut(s)	157, 370, 868
PleI	GAGTC	2 cut(s)	519, 679
PpsI	GAGTC	2 cut(s)	519, 679
Psp124BI	GAGCTC	1 cut(s)	562
PspN4I	GGNNCC	1 cut(s)	793
PspPI	GGNCC	1 cut(s)	398
PspXI	VCTCGAGB	1 cut(s)	616
PstI	CTGCAG	1 cut(s)	935
PsuI	RGATCY	1 cut(s)	466
PsyI	GACNNNGTC	1 cut(s)	542
PvuII	CAGCTG	2 cut(s)	314, 866
RsaI	GTAC	2 cut(s)	646, 827
RsaNI	GTAC	2 cut(s)	645, 826
RseI	CAYNNNNRTG	1 cut(s)	221
SacI	GAGCTC	1 cut(s)	562
SaqAI	TTAA	3 cut(s)	195, 942, 946
SatI	GCNGC	3 cut(s)	156, 369, 867
Sau3AI	GATC	8 cut(s)	6, 113, 298, 466, 496, 700, 775, 873
Sau96I	GGNCC	1 cut(s)	398
SchI	GAGTC	2 cut(s)	519, 679
ScrFI	CCNGG	1 cut(s)	333
SduI	GDGCHC	1 cut(s)	562
SfaNI	GCATC	4 cut(s)	196, 218, 367, 738
SfcI	CTRYAG	3 cut(s)	315, 804, 931
Sfr274I	CTCGAG	1 cut(s)	616
SfuI	TTCGAA	1 cut(s)	517
SinI	GGWCC	1 cut(s)	398
SlaI	CTCGAG	1 cut(s)	616
SmiMI	CAYNNNNRTG	1 cut(s)	221
SmlI	CTYRAG	1 cut(s)	616
SmoI	CTYRAG	1 cut(s)	616
Sse9I	AATT	2 cut(s)	265, 943
SsiI	CCGC	2 cut(s)	129, 632
SspMI	CTAG	3 cut(s)	372, 486, 689
SstI	GAGCTC	1 cut(s)	562
StyD4I	CCNGG	1 cut(s)	331
StyI	CCWWGG	1 cut(s)	237
TaaI	ACNGT	1 cut(s)	674
TaiI	ACGT	2 cut(s)	148, 593
TaqI	TCGA	5 cut(s)	297, 424, 517, 617, 723
TaqII	GACCGA	1 cut(s)	202
TasI	AATT	2 cut(s)	265, 943
TatI	WGTACW	1 cut(s)	825
TfiI	GAWTC	5 cut(s)	16, 254, 431, 636, 927
Tru1I	TTAA	3 cut(s)	195, 942, 946
Tru9I	TTAA	3 cut(s)	195, 942, 946
TscAI	CASTG	2 cut(s)	907, 940
TseFI	GTSAC	3 cut(s)	620, 706, 817
TseI	GCWGC	3 cut(s)	155, 368, 866
Tsp45I	GTSAC	3 cut(s)	620, 706, 817
TspDTI	ATGAA	1 cut(s)	246
TspGWI	ACGGA	2 cut(s)	158, 836
TspRI	CASTG	2 cut(s)	907, 940
Tth111I	GACNNNGTC	1 cut(s)	542
VpaK11BI	GGWCC	1 cut(s)	398
XapI	RAATTY	1 cut(s)	265
XhoI	CTCGAG	1 cut(s)	616
XmnI	GAANNNNTTC	1 cut(s)	430
XspI	CTAG	3 cut(s)	372, 486, 689
Zsp2I	ATGCAT	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.