Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0006076

Physical Location & Seq

Genomic Coordinates Forward (+)

65202821 .. 65204090

Gene Structure 1270 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00386290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGATGAAGTCTTTTAGCTCCAATGCAAATGTTGCCTTAGTTGCTTTGCTGTTGTTGCTTGCCCTGATGAGCACAGCAAGCTCGGCTAAGCTCTCCTCGACATTTTATGACAAAGCCTGTCCAAATGCTCTCGCTACTATCAGAAAATCAATAAGAACTGCAGTCTCAGCCGAACGTCGGATGGCAGCCTCCCTAATCCGGCTGCATTTCCATGATTGCTTTGTTCAGGGTTGTGATGCATCAATCTTACTTGACGATACTTCTTCTATCACAGGCGAAAAGAACGCACTGCCTAATCTGAACTCTGTGAGAGGATATGGAGTAATAGATAATGCCAAATCTGAAGTGGAGAAACTATGTCCTGGGGTAGTTTCTTGTGCAGATATCGTTGCCGTGGCTGCTAGGGATGCTTCAGTTGCCGTTGGAGGTCCAGACTGGGCGGTGAAGCTTGGAAGAAGAGATTCGACCACAGCAAGCAAAACTCTAGCTGAAAGCTCGCTTCCCAGTTTCTTAGACAGCCTCGAAAGCCTTGCTAACAGATTTGCTGGTAATGGCCTCAATATCAGAGATTTGGTTGCGCTATCCGGTGCACATTCAATTGGACAAGCTCAGTGCTTCACATTCCGTAGAATCTACAGCAACACCAGTGACATTGATGCAAACTTTGCTCGTACTCGCGGACGTGGTTGTCCAGCAGCAAATAACGTTGGTAATGCAAATTTGGCACCACTTGATTTGGTGACACCTAATCAATTGGACAACAACTACTTCAAGAACTTGATCCAGAAGAAGGGTCTTCTTGCATCTGATCAAGTTCTCTTTAGTGGAGGATCCACAGACAGCATTGTCTCGGAGTATAGCTCGAAACCTGCAAATTTCAAGGCTGATTTCGCTGCCGCCATGATCAAGATGGGAAACATTAACCCTCTCACTGGCTCGAATGGGCAGATAAGAAGGATATGTAGTGCTCTCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0006950 GO:0008150 GO:0009628 GO:0009987 GO:0033554 GO:0036293 GO:0036294 GO:0042221 GO:0050896 GO:0051716 GO:0070482 GO:0070887 GO:0071453 GO:0071456

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

325

Amino Acids

34.35

Weight (kDa)

9.02

Isoelectric Point (pI)

29.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	47 - 288	1.3e-79	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006076)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14540 AT1G14550
fragaria_vesca	FvH4_2g30540 FvH4_4g13860 FvH4_4g36130
malus_domestica	MD13G1011000.v1.1 MD13G1011200.v1.1
prunus_persica	Prupe.1G341900_v2.0.a1
pyrus_communis	pycom13g00920
rosa_chinensis	RchiOBHm_Chr4g0445821 RchiOBHm_Chr4g0445871
rosa_laevigata	RLG00000005706 RLG00000005707
rosa_multiflora	Rmu_co8195238.1_g000001 Rmu_sc0000961.1_g000005 Rmu_sc0000961.1_g000010
rosa_roxburghii	Rroxscaffold_5G00386290 Rroxscaffold_5G00386310
rosa_rugosa	Rorug04G0365400
rosa_samantha	Rh4AG426900 Rh4AG427100 Rh4BG437300 Rh4CG454100 Rh4DG435200 Rh4DG435400
rosa_wichuraiana	Rw4G036540 Rw4G036570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	687, 845
Acc36I	ACCTGC	1 cut(s)	877
AccB1I	GGYRCC	1 cut(s)	724
AccII	CGCG	1 cut(s)	678
AciI	CCGC	3 cut(s)	440, 678, 897
AclI	AACGTT	1 cut(s)	705
AclWI	GGATC	3 cut(s)	775, 825, 838
AcsI	RAATTY	2 cut(s)	718, 874
AcuI	CTGAAG	2 cut(s)	363, 396
AfaI	GTAC	1 cut(s)	673
AfiI	CCNNNNNNNGG	4 cut(s)	177, 198, 790, 932
AgsI	TTSAA	3 cut(s)	597, 772, 880
AjiI	CACGTC	1 cut(s)	683
AjnI	CCWGG	1 cut(s)	361
AluBI	AGCT	8 cut(s)	18, 81, 91, 448, 488, 495, 608, 861
AluI	AGCT	8 cut(s)	18, 81, 91, 448, 488, 495, 608, 861
Alw21I	GWGCWC	3 cut(s)	74, 592, 970
Alw26I	GTCTC	2 cut(s)	169, 853
Alw44I	GTGCAC	1 cut(s)	588
AlwI	GGATC	3 cut(s)	775, 825, 838
AoxI	GGCC	1 cut(s)	553
ApaLI	GTGCAC	1 cut(s)	588
ApeKI	GCWGC	5 cut(s)	185, 202, 398, 695, 893
ApoI	RAATTY	2 cut(s)	718, 874
Asp700I	GAANNNNTTC	1 cut(s)	460
AspLEI	GCGC	1 cut(s)	580
AspS9I	GGNCC	1 cut(s)	428
AsuHPI	GGTGA	2 cut(s)	454, 751
AvaII	GGWCC	1 cut(s)	428
BaeGI	GKGCMC	1 cut(s)	592
BamHI	GGATCC	1 cut(s)	830
BanI	GGYRCC	1 cut(s)	724
BbsI	GAAGAC	1 cut(s)	788
Bbv12I	GWGCWC	3 cut(s)	74, 592, 970
BbvI	GCAGC	5 cut(s)	189, 197, 385, 707, 880
BccI	CCATC	2 cut(s)	175, 904
BceAI	ACGGC	2 cut(s)	377, 404
BcgI	CGANNNNNNTGC	2 cut(s)	512, 546
BciT130I	CCWGG	1 cut(s)	363
BclI	TGATCA	2 cut(s)	808, 903
BcoDI	GTCTC	2 cut(s)	169, 853
BfaI	CTAG	2 cut(s)	402, 485
BfmI	CTRYAG	2 cut(s)	159, 634
BfuAI	ACCTGC	1 cut(s)	877
BisI	GCNGC	6 cut(s)	186, 203, 399, 696, 894, 897
BlpI	GCTNAGC	1 cut(s)	87
BlsI	GCNGC	6 cut(s)	187, 204, 400, 697, 895, 898
Bme1390I	CCNGG	1 cut(s)	363
Bme18I	GGWCC	1 cut(s)	428
BmgBI	CACGTC	1 cut(s)	683
BmgT120I	GGNCC	1 cut(s)	428
BmiI	GGNNCC	2 cut(s)	726, 832
BmrFI	CCNGG	1 cut(s)	363
BmrI	ACTGGG	2 cut(s)	445, 498
BmsI	GCATC	5 cut(s)	226, 248, 397, 646, 812
BmuI	ACTGGG	2 cut(s)	445, 498
BpiI	GAAGAC	1 cut(s)	788
BplI	GAGNNNNNCTC	2 cut(s)	845, 877
Bpu1102I	GCTNAGC	1 cut(s)	87
BsaJI	CCNNGG	2 cut(s)	362, 393
BsaWI	WCCGGW	1 cut(s)	584
Bsc4I	CCNNNNNNNGG	4 cut(s)	177, 198, 790, 932
Bse1I	ACTGG	4 cut(s)	440, 504, 645, 937
BseBI	CCWGG	1 cut(s)	363
BseDI	CCNNGG	2 cut(s)	362, 393
BseGI	GGATG	2 cut(s)	186, 412
BseLI	CCNNNNNNNGG	4 cut(s)	177, 198, 790, 932
BseMII	CTCAG	2 cut(s)	180, 623
BseNI	ACTGG	4 cut(s)	440, 504, 645, 937
BseRI	GAGGAG	1 cut(s)	85
BseSI	GKGCMC	1 cut(s)	592
BseXI	GCAGC	5 cut(s)	189, 197, 385, 707, 880
BsgI	GTGCAG	1 cut(s)	399
Bsh1236I	CGCG	1 cut(s)	678
BshFI	GGCC	1 cut(s)	555
BshNI	GGYRCC	1 cut(s)	724
BsiHKAI	GWGCWC	3 cut(s)	74, 592, 970
BsiSI	CCGG	2 cut(s)	199, 585
BslI	CCNNNNNNNGG	4 cut(s)	177, 198, 790, 932
BsmAI	GTCTC	2 cut(s)	169, 853
BsnI	GGCC	1 cut(s)	555
Bsp1286I	GDGCHC	3 cut(s)	74, 592, 970
Bsp143I	GATC	4 cut(s)	780, 808, 830, 903
Bsp1720I	GCTNAGC	1 cut(s)	87
BspACI	CCGC	3 cut(s)	440, 678, 897
BspANI	GGCC	1 cut(s)	555
BspCNI	CTCAG	2 cut(s)	179, 622
BspFNI	CGCG	1 cut(s)	678
BspLI	GGNNCC	2 cut(s)	726, 832
BspMAI	CTGCAG	1 cut(s)	163
BspMI	ACCTGC	1 cut(s)	877
BspPI	GGATC	3 cut(s)	775, 825, 838
BspT107I	GGYRCC	1 cut(s)	724
BsrI	ACTGG	4 cut(s)	440, 504, 645, 937
BssECI	CCNNGG	2 cut(s)	362, 393
BssMI	GATC	4 cut(s)	780, 808, 830, 903
Bst2UI	CCWGG	1 cut(s)	363
Bst6I	CTCTTC	1 cut(s)	451
BstAPI	GCANNNNNTGC	2 cut(s)	32, 665
BstC8I	GCNNGC	4 cut(s)	60, 79, 475, 497
BstDEI	CTNAG	5 cut(s)	37, 87, 166, 511, 609
BstDSI	CCRYGG	1 cut(s)	393
BstF5I	GGATG	2 cut(s)	186, 412
BstFNI	CGCG	1 cut(s)	678
BstHHI	GCGC	1 cut(s)	580
BstKTI	GATC	4 cut(s)	783, 811, 833, 906
BstMAI	GTCTC	2 cut(s)	169, 853
BstMBI	GATC	4 cut(s)	780, 808, 830, 903
BstNI	CCWGG	1 cut(s)	363
BstSCI	CCNGG	1 cut(s)	361
BstSFI	CTRYAG	2 cut(s)	159, 634
BstSLI	GKGCMC	1 cut(s)	592
BstUI	CGCG	1 cut(s)	678
BstV1I	GCAGC	5 cut(s)	189, 197, 385, 707, 880
BstV2I	GAAGAC	1 cut(s)	788
BstX2I	RGATCY	1 cut(s)	830
BstYI	RGATCY	1 cut(s)	830
BsuRI	GGCC	1 cut(s)	555
BtgI	CCRYGG	1 cut(s)	393
BtrI	CACGTC	1 cut(s)	683
BtsCI	GGATG	2 cut(s)	186, 412
BtsI	GCAGTG	1 cut(s)	287
BtsIMutI	CAGTG	4 cut(s)	287, 617, 652, 930
BveI	ACCTGC	1 cut(s)	877
Cac8I	GCNNGC	4 cut(s)	60, 79, 475, 497
CfoI	GCGC	1 cut(s)	580
Cfr13I	GGNCC	1 cut(s)	428
Csp6I	GTAC	1 cut(s)	672
CspCI	CAANNNNNGTGG	2 cut(s)	717, 752
CviAII	CATG	2 cut(s)	212, 901
CviQI	GTAC	1 cut(s)	672
DdeI	CTNAG	5 cut(s)	37, 87, 166, 511, 609
DpnI	GATC	4 cut(s)	782, 810, 832, 905
DpnII	GATC	4 cut(s)	780, 808, 830, 903
DrdI	GACNNNNNNGTC	2 cut(s)	687, 845
DseDI	GACNNNNNNGTC	2 cut(s)	687, 845
Eam1104I	CTCTTC	1 cut(s)	451
EarI	CTCTTC	1 cut(s)	451
Eco32I	GATATC	1 cut(s)	385
Eco47I	GGWCC	1 cut(s)	428
Eco57I	CTGAAG	2 cut(s)	363, 396
EcoRII	CCWGG	1 cut(s)	361
EcoRV	GATATC	1 cut(s)	385
EcoT22I	ATGCAT	1 cut(s)	241
FaeI	CATG	2 cut(s)	215, 904
FaiI	YATR	7 cut(s)	108, 213, 318, 358, 858, 902, 961
FatI	CATG	2 cut(s)	211, 900
FbaI	TGATCA	2 cut(s)	808, 903
Fnu4HI	GCNGC	6 cut(s)	186, 203, 399, 696, 894, 897
FokI	GGATG	2 cut(s)	193, 419
Fsp4HI	GCNGC	6 cut(s)	186, 203, 399, 696, 894, 897
FspBI	CTAG	2 cut(s)	402, 485
GlaI	GCGC	1 cut(s)	579
GluI	GCNGC	6 cut(s)	186, 203, 399, 696, 894, 897
HaeIII	GGCC	1 cut(s)	555
HapII	CCGG	2 cut(s)	199, 585
HhaI	GCGC	1 cut(s)	580
Hin1II	CATG	2 cut(s)	215, 904
Hin6I	GCGC	1 cut(s)	578
HinP1I	GCGC	1 cut(s)	578
HindIII	AAGCTT	1 cut(s)	446
HinfI	GANTC	2 cut(s)	461, 630
HpaII	CCGG	2 cut(s)	199, 585
HphI	GGTGA	2 cut(s)	454, 751
Hpy166II	GTNNAC	1 cut(s)	590
Hpy188I	TCNGA	7 cut(s)	143, 180, 300, 343, 566, 808, 853
Hpy188III	TCNNGA	4 cut(s)	431, 772, 784, 907
Hpy8I	GTNNAC	1 cut(s)	590
Hpy99I	CGWCG	1 cut(s)	180
HpyAV	CCTTC	2 cut(s)	784, 948
HpyCH4IV	ACGT	3 cut(s)	175, 682, 705
HpyF3I	CTNAG	5 cut(s)	37, 87, 166, 511, 609
HpySE526I	ACGT	3 cut(s)	175, 682, 705
Hsp92II	CATG	2 cut(s)	215, 904
HspAI	GCGC	1 cut(s)	578
Ksp22I	TGATCA	2 cut(s)	808, 903
Kzo9I	GATC	4 cut(s)	780, 808, 830, 903
LmnI	GCTCC	1 cut(s)	23
Lsp1109I	GCAGC	5 cut(s)	189, 197, 385, 707, 880
LweI	GCATC	5 cut(s)	226, 248, 397, 646, 812
MaeI	CTAG	2 cut(s)	402, 485
MaeII	ACGT	3 cut(s)	175, 682, 705
MaeIII	GTNAC	2 cut(s)	647, 739
MalI	GATC	4 cut(s)	782, 810, 832, 905
MboI	GATC	4 cut(s)	780, 808, 830, 903
MboII	GAAGA	5 cut(s)	255, 465, 468, 788, 799
MfeI	CAATTG	2 cut(s)	597, 752
MflI	RGATCY	1 cut(s)	830
MhlI	GDGCHC	3 cut(s)	74, 592, 970
MluCI	AATT	4 cut(s)	597, 718, 752, 874
MmeI	TCCRAC	2 cut(s)	158, 403
MnlI	CCTC	8 cut(s)	106, 199, 305, 419, 530, 566, 821, 936
Mph1103I	ATGCAT	1 cut(s)	241
MroXI	GAANNNNTTC	1 cut(s)	460
MseI	TTAA	1 cut(s)	921
MslI	CAYNNNNRTG	1 cut(s)	210
MspI	CCGG	2 cut(s)	199, 585
MspR9I	CCNGG	1 cut(s)	363
MunI	CAATTG	2 cut(s)	597, 752
MvaI	CCWGG	1 cut(s)	363
MvnI	CGCG	1 cut(s)	678
NdeII	GATC	4 cut(s)	780, 808, 830, 903
NlaIII	CATG	2 cut(s)	215, 904
NlaIV	GGNNCC	2 cut(s)	726, 832
NmeAIII	GCCGAG	1 cut(s)	62
NmuCI	GTSAC	2 cut(s)	647, 739
NsiI	ATGCAT	1 cut(s)	241
PdmI	GAANNNNTTC	1 cut(s)	460
PfeI	GAWTC	2 cut(s)	461, 630
PkrI	GCNGC	6 cut(s)	187, 204, 400, 697, 895, 898
Psp1406I	AACGTT	1 cut(s)	705
Psp6I	CCWGG	1 cut(s)	361
PspGI	CCWGG	1 cut(s)	361
PspN4I	GGNNCC	2 cut(s)	726, 832
PspPI	GGNCC	1 cut(s)	428
PstI	CTGCAG	1 cut(s)	163
PsuI	RGATCY	1 cut(s)	830
RsaI	GTAC	1 cut(s)	673
RsaNI	GTAC	1 cut(s)	672
RseI	CAYNNNNRTG	1 cut(s)	210
SaqAI	TTAA	1 cut(s)	921
SatI	GCNGC	6 cut(s)	186, 203, 399, 696, 894, 897
Sau3AI	GATC	4 cut(s)	780, 808, 830, 903
Sau96I	GGNCC	1 cut(s)	428
ScrFI	CCNGG	1 cut(s)	363
SduI	GDGCHC	3 cut(s)	74, 592, 970
SfaNI	GCATC	5 cut(s)	226, 248, 397, 646, 812
SfcI	CTRYAG	2 cut(s)	159, 634
SinI	GGWCC	1 cut(s)	428
SmiMI	CAYNNNNRTG	1 cut(s)	210
Sse9I	AATT	4 cut(s)	597, 718, 752, 874
SsiI	CCGC	3 cut(s)	440, 678, 897
SspMI	CTAG	2 cut(s)	402, 485
StyD4I	CCNGG	1 cut(s)	361
TaiI	ACGT	3 cut(s)	178, 685, 708
TaqI	TCGA	5 cut(s)	98, 464, 522, 863, 938
TasI	AATT	4 cut(s)	597, 718, 752, 874
TauI	GCSGC	1 cut(s)	899
TfiI	GAWTC	2 cut(s)	461, 630
Tru1I	TTAA	1 cut(s)	921
Tru9I	TTAA	1 cut(s)	921
TscAI	CASTG	4 cut(s)	294, 617, 652, 937
TseFI	GTSAC	2 cut(s)	647, 739
TseI	GCWGC	5 cut(s)	185, 202, 398, 695, 893
Tsp45I	GTSAC	2 cut(s)	647, 739
TspDTI	ATGAA	1 cut(s)	20
TspGWI	ACGGA	1 cut(s)	614
TspRI	CASTG	4 cut(s)	294, 617, 652, 937
VneI	GTGCAC	1 cut(s)	588
VpaK11BI	GGWCC	1 cut(s)	428
XapI	RAATTY	2 cut(s)	718, 874
XcmI	CCANNNNNNNNNTGG	2 cut(s)	343, 907
XmnI	GAANNNNTTC	1 cut(s)	460
XspI	CTAG	2 cut(s)	402, 485
Zsp2I	ATGCAT	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.