Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0006076

Physical Location & Seq

Genomic Coordinates Reverse (-)

591540 .. 592691

Gene Structure 1152 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g00920.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGTCTCTCCCTTTCTTTTCCGGCCATGGAAATGTCGTGGCTGTTGCACTCGTGATGTTGGTTTTCATGAGCGCAACAAGTGAAGCGCAATTATCTTCTACATTTTATGACAAAACCTGTCCAAACGCTCTTACCACTATCAAAAATGCCGTAAGAACAGCTGTTTCAAGTGAAAGGCGGATGGCCGCGTCCCTAATCCGCCTCCATTTCCATGATTGCTTTGTCCAGGGTTGTGATGCATCAATCTTACTTGATGACGCTCCTTCTATCACAAGTGAAAAGGACGCATTGCAAAACAACGGTTCTGTGAGAGGCTTTGAAGTCATAGACAAAGCAAAAGCTGAAGTGGAGAAGGTCTGCCCTGGTGTCGTATCTTGCGCAGATATTCTCGCTGTCGCCGCTCGGGATGCATCCGTTGCCGTGAGCGGTCCATCTTGGACGGTGAAACTTGGAAGAAGAGATTCCACCACGGCAAGCCAAAGCCTAGCTGAAAGTTCACTTCCACTTTTCACGGACAGCCTTGACCGCCTTAAAGAGCGATTTGGCGACTTAGGCCTCAACGCGAGAGATTTGGTTGCACTGTCAGGTGCACATACAATTGGACAGGCTCGTTGCGTTACATTCCGTGGCAGGATTTACAACAATGCAAGTGACATCGATTCTAACTTTGCCACTACTCGCAAACGTCGTTGTCCAGCTGACGCAAACAACGGCGATGCAAATTTGGCACCGCTCGAGTTGGTGACACCGAACTCATTTGACAACAATTACTACAAGAATTTGATTCAGAAGAAGGGTCTTCTTGAATCGGATCAAGTTCTTTTTAGTGGAGGTTCCACAGACAGCATCGTCTCCGAGTACAGTTCCAAGCCCGCAACTTTTAAGGCTGATTTTATCACCGCTATGATTAAAATGGGAGACATTAATCCTCTCACCGGTTCAGCTGGAGAGGTCAGAAGGATTTGCAGTGCTCTCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0006950 GO:0008150 GO:0009628 GO:0009987 GO:0033554 GO:0036293 GO:0036294 GO:0042221 GO:0050896 GO:0051716 GO:0070482 GO:0070887 GO:0071453 GO:0071456

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

327

Amino Acids

34.89

Weight (kDa)

6.44

Isoelectric Point (pI)

37.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006076)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14540 AT1G14550
fragaria_vesca	FvH4_2g30540 FvH4_4g13860 FvH4_4g36130
malus_domestica	MD13G1011000.v1.1 MD13G1011200.v1.1
prunus_persica	Prupe.1G341900_v2.0.a1
pyrus_communis	pycom13g00920
rosa_chinensis	RchiOBHm_Chr4g0445821 RchiOBHm_Chr4g0445871
rosa_laevigata	RLG00000005706 RLG00000005707
rosa_multiflora	Rmu_co8195238.1_g000001 Rmu_sc0000961.1_g000005 Rmu_sc0000961.1_g000010
rosa_roxburghii	Rroxscaffold_5G00386290 Rroxscaffold_5G00386310
rosa_rugosa	Rorug04G0365400
rosa_samantha	Rh4AG426900 Rh4AG427100 Rh4BG437300 Rh4CG454100 Rh4DG435200 Rh4DG435400
rosa_wichuraiana	Rw4G036540 Rw4G036570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	848
Acc16I	TGCGCA	1 cut(s)	379
AccB1I	GGYRCC	1 cut(s)	727
AccBSI	CCGCTC	3 cut(s)	401, 426, 733
AccII	CGCG	2 cut(s)	188, 563
AciI	CCGC	9 cut(s)	178, 186, 199, 399, 426, 526, 731, 873, 900
AclWI	GGATC	1 cut(s)	819
AcoI	YGGCCR	2 cut(s)	22, 183
AcsI	RAATTY	2 cut(s)	721, 778
AcuI	CTGAAG	1 cut(s)	363
AfaI	GTAC	1 cut(s)	860
AfiI	CCNNNNNNNGG	1 cut(s)	935
AgeI	ACCGGT	1 cut(s)	935
AgsI	TTSAA	3 cut(s)	168, 320, 806
AjnI	CCWGG	2 cut(s)	225, 361
AluBI	AGCT	5 cut(s)	161, 341, 488, 698, 944
AluI	AGCT	5 cut(s)	161, 341, 488, 698, 944
Alw21I	GWGCWC	2 cut(s)	592, 973
Alw26I	GTCTC	3 cut(s)	9, 856, 912
Alw44I	GTGCAC	1 cut(s)	588
AlwI	GGATC	1 cut(s)	819
Ama87I	CYCGRG	2 cut(s)	402, 734
AoxI	GGCC	3 cut(s)	22, 183, 553
ApaLI	GTGCAC	1 cut(s)	588
ApoI	RAATTY	2 cut(s)	721, 778
AseI	ATTAAT	1 cut(s)	924
AsiGI	ACCGGT	1 cut(s)	935
Asp700I	GAANNNNTTC	1 cut(s)	460
AspLEI	GCGC	3 cut(s)	74, 88, 380
AspS9I	GGNCC	1 cut(s)	428
AsuHPI	GGTGA	4 cut(s)	454, 754, 889, 925
AvaI	CYCGRG	2 cut(s)	402, 734
AvaII	GGWCC	1 cut(s)	428
BaeGI	GKGCMC	1 cut(s)	592
BanI	GGYRCC	1 cut(s)	727
BauI	CACGAG	1 cut(s)	50
BbsI	GAAGAC	1 cut(s)	791
Bbv12I	GWGCWC	2 cut(s)	592, 973
BccI	CCATC	2 cut(s)	175, 439
BceAI	ACGGC	4 cut(s)	134, 404, 486, 727
BciT130I	CCWGG	2 cut(s)	227, 363
BcoDI	GTCTC	3 cut(s)	9, 856, 912
BfaI	CTAG	1 cut(s)	485
BisI	GCNGC	2 cut(s)	186, 399
BlsI	GCNGC	2 cut(s)	187, 400
Bme1390I	CCNGG	2 cut(s)	227, 363
Bme18I	GGWCC	1 cut(s)	428
BmeT110I	CYCGRG	2 cut(s)	402, 734
BmgT120I	GGNCC	1 cut(s)	428
BmiI	GGNNCC	2 cut(s)	729, 835
BmrFI	CCNGG	2 cut(s)	227, 363
BmsI	GCATC	6 cut(s)	226, 248, 397, 419, 706, 855
BpiI	GAAGAC	1 cut(s)	791
BpmI	CTGGAG	1 cut(s)	966
Bsa29I	ATCGAT	1 cut(s)	657
BsaJI	CCNNGG	5 cut(s)	25, 226, 361, 468, 625
BsaWI	WCCGGW	1 cut(s)	935
Bsc4I	CCNNNNNNNGG	1 cut(s)	935
Bse118I	RCCGGY	1 cut(s)	935
Bse3DI	GCAATG	1 cut(s)	287
BseBI	CCWGG	2 cut(s)	227, 363
BseCI	ATCGAT	1 cut(s)	657
BseDI	CCNNGG	5 cut(s)	25, 226, 361, 468, 625
BseGI	GGATG	3 cut(s)	186, 410, 412
BseLI	CCNNNNNNNGG	1 cut(s)	935
BseMI	GCAATG	1 cut(s)	287
BseSI	GKGCMC	1 cut(s)	592
Bsh1236I	CGCG	2 cut(s)	188, 563
BshFI	GGCC	3 cut(s)	24, 185, 555
BshNI	GGYRCC	1 cut(s)	727
BshTI	ACCGGT	1 cut(s)	935
BshVI	ATCGAT	1 cut(s)	657
BsiHKAI	GWGCWC	2 cut(s)	592, 973
BsiHKCI	CYCGRG	2 cut(s)	402, 734
BsiSI	CCGG	2 cut(s)	21, 936
BslFI	GGGAC	1 cut(s)	175
BslI	CCNNNNNNNGG	1 cut(s)	935
BsmAI	GTCTC	3 cut(s)	9, 856, 912
BsmBI	CGTCTC	1 cut(s)	856
BsmFI	GGGAC	1 cut(s)	175
BsnI	GGCC	3 cut(s)	24, 185, 555
BsoBI	CYCGRG	2 cut(s)	402, 734
Bsp1286I	GDGCHC	2 cut(s)	592, 973
Bsp143I	GATC	1 cut(s)	811
Bsp19I	CCATGG	1 cut(s)	25
BspACI	CCGC	9 cut(s)	178, 186, 199, 399, 426, 526, 731, 873, 900
BspANI	GGCC	3 cut(s)	24, 185, 555
BspDI	ATCGAT	1 cut(s)	657
BspFNI	CGCG	2 cut(s)	188, 563
BspHI	TCATGA	1 cut(s)	66
BspLI	GGNNCC	2 cut(s)	729, 835
BspPI	GGATC	1 cut(s)	819
BspT107I	GGYRCC	1 cut(s)	727
BsrBI	CCGCTC	3 cut(s)	401, 426, 733
BsrDI	GCAATG	1 cut(s)	287
BsrFI	RCCGGY	1 cut(s)	935
BssAI	RCCGGY	1 cut(s)	935
BssECI	CCNNGG	5 cut(s)	25, 226, 361, 468, 625
BssMI	GATC	1 cut(s)	811
BssSI	CACGAG	1 cut(s)	50
BssT1I	CCWWGG	1 cut(s)	25
Bst2BI	CACGAG	1 cut(s)	50
Bst2UI	CCWGG	2 cut(s)	227, 363
Bst4CI	ACNGT	4 cut(s)	302, 442, 582, 863
Bst6I	CTCTTC	1 cut(s)	451
BstAPI	GCANNNNNTGC	1 cut(s)	416
BstC8I	GCNNGC	2 cut(s)	475, 873
BstDEI	CTNAG	1 cut(s)	550
BstDSI	CCRYGG	3 cut(s)	25, 468, 625
BstF5I	GGATG	3 cut(s)	186, 410, 412
BstFNI	CGCG	2 cut(s)	188, 563
BstHHI	GCGC	3 cut(s)	74, 88, 380
BstKTI	GATC	1 cut(s)	814
BstMAI	GTCTC	3 cut(s)	9, 856, 912
BstMBI	GATC	1 cut(s)	811
BstMWI	GCNNNNNNNGC	6 cut(s)	398, 407, 416, 525, 552, 725
BstNI	CCWGG	2 cut(s)	227, 363
BstSCI	CCNGG	2 cut(s)	225, 361
BstSLI	GKGCMC	1 cut(s)	592
BstUI	CGCG	2 cut(s)	188, 563
BstV2I	GAAGAC	1 cut(s)	791
Bsu15I	ATCGAT	1 cut(s)	657
BsuRI	GGCC	3 cut(s)	24, 185, 555
BsuTUI	ATCGAT	1 cut(s)	657
BtgI	CCRYGG	3 cut(s)	25, 468, 625
BtgZI	GCGATG	1 cut(s)	729
BtsCI	GGATG	3 cut(s)	186, 410, 412
BtsI	GCAGTG	1 cut(s)	973
BtsIMutI	CAGTG	2 cut(s)	578, 973
Cac8I	GCNNGC	2 cut(s)	475, 873
CciI	TCATGA	1 cut(s)	66
CfoI	GCGC	3 cut(s)	74, 88, 380
Cfr10I	RCCGGY	1 cut(s)	935
Cfr13I	GGNCC	1 cut(s)	428
ClaI	ATCGAT	1 cut(s)	657
CseI	GACGC	4 cut(s)	177, 266, 293, 710
Csp6I	GTAC	1 cut(s)	859
CspAI	ACCGGT	1 cut(s)	935
CviAII	CATG	3 cut(s)	26, 67, 212
CviQI	GTAC	1 cut(s)	859
DdeI	CTNAG	1 cut(s)	550
DpnI	GATC	1 cut(s)	813
DpnII	GATC	1 cut(s)	811
DrdI	GACNNNNNNGTC	1 cut(s)	848
DseDI	GACNNNNNNGTC	1 cut(s)	848
EaeI	YGGCCR	2 cut(s)	22, 183
Eam1104I	CTCTTC	1 cut(s)	451
EarI	CTCTTC	1 cut(s)	451
EciI	GGCGGA	2 cut(s)	188, 193
Eco130I	CCWWGG	1 cut(s)	25
Eco147I	AGGCCT	1 cut(s)	555
Eco47I	GGWCC	1 cut(s)	428
Eco57I	CTGAAG	1 cut(s)	363
Eco88I	CYCGRG	2 cut(s)	402, 734
EcoRII	CCWGG	2 cut(s)	225, 361
EcoT14I	CCWWGG	1 cut(s)	25
EcoT22I	ATGCAT	2 cut(s)	241, 412
ErhI	CCWWGG	1 cut(s)	25
Esp3I	CGTCTC	1 cut(s)	856
FaeI	CATG	3 cut(s)	29, 70, 215
FaiI	YATR	7 cut(s)	27, 68, 108, 213, 326, 594, 905
FaqI	GGGAC	1 cut(s)	175
FatI	CATG	3 cut(s)	25, 66, 211
FauI	CCCGC	1 cut(s)	880
Fnu4HI	GCNGC	2 cut(s)	186, 399
FokI	GGATG	3 cut(s)	193, 397, 419
Fsp4HI	GCNGC	2 cut(s)	186, 399
FspBI	CTAG	1 cut(s)	485
FspI	TGCGCA	1 cut(s)	379
GlaI	GCGC	3 cut(s)	73, 87, 379
GluI	GCNGC	2 cut(s)	186, 399
GsuI	CTGGAG	1 cut(s)	966
HaeIII	GGCC	3 cut(s)	24, 185, 555
HapII	CCGG	2 cut(s)	21, 936
HgaI	GACGC	4 cut(s)	177, 266, 293, 710
HhaI	GCGC	3 cut(s)	74, 88, 380
Hin1II	CATG	3 cut(s)	29, 70, 215
Hin6I	GCGC	3 cut(s)	72, 86, 378
HinP1I	GCGC	3 cut(s)	72, 86, 378
HinfI	GANTC	4 cut(s)	461, 659, 784, 806
HpaII	CCGG	2 cut(s)	21, 936
HphI	GGTGA	4 cut(s)	454, 754, 889, 925
Hpy166II	GTNNAC	2 cut(s)	497, 590
Hpy188I	TCNGA	4 cut(s)	789, 811, 856, 956
Hpy188III	TCNNGA	4 cut(s)	52, 67, 404, 803
Hpy8I	GTNNAC	2 cut(s)	497, 590
Hpy99I	CGWCG	1 cut(s)	690
HpyAV	CCTTC	4 cut(s)	273, 346, 787, 951
HpyCH4III	ACNGT	4 cut(s)	302, 442, 582, 863
HpyCH4IV	ACGT	1 cut(s)	685
HpyCH4V	TGCA	9 cut(s)	47, 239, 292, 410, 578, 590, 647, 719, 966
HpyF10VI	GCNNNNNNNGC	6 cut(s)	398, 407, 416, 525, 552, 725
HpyF3I	CTNAG	1 cut(s)	550
HpySE526I	ACGT	1 cut(s)	685
Hsp92II	CATG	3 cut(s)	29, 70, 215
HspAI	GCGC	3 cut(s)	72, 86, 378
Kzo9I	GATC	1 cut(s)	811
LmnI	GCTCC	1 cut(s)	265
LweI	GCATC	6 cut(s)	226, 248, 397, 419, 706, 855
MaeI	CTAG	1 cut(s)	485
MaeII	ACGT	1 cut(s)	685
MaeIII	GTNAC	3 cut(s)	616, 650, 742
MalI	GATC	1 cut(s)	813
MbiI	CCGCTC	3 cut(s)	401, 426, 733
MboI	GATC	1 cut(s)	811
MboII	GAAGA	5 cut(s)	87, 465, 468, 791, 802
MfeI	CAATTG	1 cut(s)	597
MhlI	GDGCHC	2 cut(s)	592, 973
MluCI	AATT	5 cut(s)	89, 597, 721, 766, 778
MnlI	CCTC	6 cut(s)	212, 305, 566, 824, 939, 943
Mph1103I	ATGCAT	2 cut(s)	241, 412
MroXI	GAANNNNTTC	1 cut(s)	460
MseI	TTAA	4 cut(s)	531, 882, 909, 924
MslI	CAYNNNNRTG	3 cut(s)	30, 210, 902
MspA1I	CMGCKG	3 cut(s)	161, 698, 944
MspI	CCGG	2 cut(s)	21, 936
MspR9I	CCNGG	2 cut(s)	227, 363
MunI	CAATTG	1 cut(s)	597
MvaI	CCWGG	2 cut(s)	227, 363
MvnI	CGCG	2 cut(s)	188, 563
MwoI	GCNNNNNNNGC	6 cut(s)	398, 407, 416, 525, 552, 725
NcoI	CCATGG	1 cut(s)	25
NdeII	GATC	1 cut(s)	811
NlaIII	CATG	3 cut(s)	29, 70, 215
NlaIV	GGNNCC	2 cut(s)	729, 835
NmuCI	GTSAC	2 cut(s)	650, 742
NsbI	TGCGCA	1 cut(s)	379
NsiI	ATGCAT	2 cut(s)	241, 412
PaeR7I	CTCGAG	1 cut(s)	734
PagI	TCATGA	1 cut(s)	66
PceI	AGGCCT	1 cut(s)	555
PcsI	WCGNNNNNNNCGW	1 cut(s)	685
PdmI	GAANNNNTTC	1 cut(s)	460
PfeI	GAWTC	4 cut(s)	461, 659, 784, 806
PinAI	ACCGGT	1 cut(s)	935
PkrI	GCNGC	2 cut(s)	187, 400
PshBI	ATTAAT	1 cut(s)	924
Psp6I	CCWGG	2 cut(s)	225, 361
PspGI	CCWGG	2 cut(s)	225, 361
PspN4I	GGNNCC	2 cut(s)	729, 835
PspPI	GGNCC	1 cut(s)	428
PspXI	VCTCGAGB	1 cut(s)	734
PvuII	CAGCTG	3 cut(s)	161, 698, 944
RsaI	GTAC	1 cut(s)	860
RsaNI	GTAC	1 cut(s)	859
RseI	CAYNNNNRTG	3 cut(s)	30, 210, 902
SaqAI	TTAA	4 cut(s)	531, 882, 909, 924
SatI	GCNGC	2 cut(s)	186, 399
Sau3AI	GATC	1 cut(s)	811
Sau96I	GGNCC	1 cut(s)	428
ScrFI	CCNGG	2 cut(s)	227, 363
SduI	GDGCHC	2 cut(s)	592, 973
SfaNI	GCATC	6 cut(s)	226, 248, 397, 419, 706, 855
Sfr274I	CTCGAG	1 cut(s)	734
SinI	GGWCC	1 cut(s)	428
SlaI	CTCGAG	1 cut(s)	734
SmiMI	CAYNNNNRTG	3 cut(s)	30, 210, 902
SmlI	CTYRAG	1 cut(s)	734
SmoI	CTYRAG	1 cut(s)	734
Sse9I	AATT	5 cut(s)	89, 597, 721, 766, 778
SseBI	AGGCCT	1 cut(s)	555
SsiI	CCGC	9 cut(s)	178, 186, 199, 399, 426, 526, 731, 873, 900
SspMI	CTAG	1 cut(s)	485
StuI	AGGCCT	1 cut(s)	555
StyD4I	CCNGG	2 cut(s)	225, 361
StyI	CCWWGG	1 cut(s)	25
TaaI	ACNGT	4 cut(s)	302, 442, 582, 863
TaiI	ACGT	1 cut(s)	688
TaqI	TCGA	2 cut(s)	657, 735
TasI	AATT	5 cut(s)	89, 597, 721, 766, 778
TatI	WGTACW	1 cut(s)	858
TauI	GCSGC	2 cut(s)	188, 401
TfiI	GAWTC	4 cut(s)	461, 659, 784, 806
Tru1I	TTAA	4 cut(s)	531, 882, 909, 924
Tru9I	TTAA	4 cut(s)	531, 882, 909, 924
TscAI	CASTG	2 cut(s)	585, 973
TseFI	GTSAC	2 cut(s)	650, 742
Tsp45I	GTSAC	2 cut(s)	650, 742
TspDTI	ATGAA	1 cut(s)	55
TspGWI	ACGGA	3 cut(s)	403, 527, 614
TspRI	CASTG	2 cut(s)	585, 973
VneI	GTGCAC	1 cut(s)	588
VpaK11BI	GGWCC	1 cut(s)	428
VspI	ATTAAT	1 cut(s)	924
XapI	RAATTY	2 cut(s)	721, 778
XhoI	CTCGAG	1 cut(s)	734
XmnI	GAANNNNTTC	1 cut(s)	460
XspI	CTAG	1 cut(s)	485
Zsp2I	ATGCAT	2 cut(s)	241, 412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.