Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0006076

Physical Location & Seq

Genomic Coordinates Reverse (-)

1024237 .. 1025622

Gene Structure 1386 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005707

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGATGAAGTCTTTTAGCTCCAATGCAAATGTTGCCTCAGTTACTTTGCTGTTGTTGCTTGCCCTGATGAGCACAGAAAGCTCAGCTAAGCTCTCCTCGACATTTTATGACAAAGCCTGTCCAAATGCTCTCGCTACGATCAGAAAATCAATAAGAACAGCAGTCTCAGCTGAACGTCGGATGGCAGCCTCCCTCATCCGCCTGCATTTCCATGATTGCTTTGTTCAGGGTTGTGATGCATCAATCTTACTTGACGATACTTCTTCTATCACAGGCGAAAAGAACGCACTGCCTAATATGAACTCTGTGAGAGGATATGGAGTCATAGATAATGCCAAATCTAAAGTGGAGAAACTATGTCCTGGGGTAGTTTCTTGTGCAGATATCGTTGCCGTGGCTGCTAGGGATGCTTCAGTTGCCGTTGGAGGTCCAGACTGGGCGGTGAAGCTTGGAAGAAGAGATTCGACCACAGCAAGCAAAACTCTTGCTGAAAGCTCGCTTCCCAGTTTCTTAGACAGCCTCGAAAGCCTTGCTAACAGATTTGCTGGTAATGGCCTCAATATCAGAGATTTGGTTGCACTATCCGGTGCACATTCAATTGGACAAGCTCAGTGCTTCACATTCCGCGGTAGAATCTACAGCAACACCAGTGACATTGATGCAAACTTTGCTCGTACTCGCGGACGTGGTTGTCCAGCAGCAACTAACGTTGGTAATGCAAATTTGGCACCACTTGATTTGGTGACACCTAATCAATTGGACAACAACTACTTCAAGAACTTGATCCAGAAGAAGGGTCTTCTTGCATCTGATCAAGTTCTCTTTAGTGGAAGATCCACACGTACAGACAGCATTGTCTCGGAGTATAGATCGAAACCTGCAAATTTCAAGGCTGATTTCGCAGCCGCCATGATCAAGATGGGAAACATTAACCCTCTCACTGGCTCGAATGGGCAGATAAGAAAGCTTTGTAGTGCTCTCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0006950 GO:0008150 GO:0009628 GO:0009987 GO:0033554 GO:0036293 GO:0036294 GO:0042221 GO:0050896 GO:0051716 GO:0070482 GO:0070887 GO:0071453 GO:0071456

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

329

Amino Acids

34.87

Weight (kDa)

9.38

Isoelectric Point (pI)

26.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	47 - 290	2.1e-79	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006076)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14540 AT1G14550
fragaria_vesca	FvH4_2g30540 FvH4_4g13860 FvH4_4g36130
malus_domestica	MD13G1011000.v1.1 MD13G1011200.v1.1
prunus_persica	Prupe.1G341900_v2.0.a1
pyrus_communis	pycom13g00920
rosa_chinensis	RchiOBHm_Chr4g0445821 RchiOBHm_Chr4g0445871
rosa_laevigata	RLG00000005706 RLG00000005707
rosa_multiflora	Rmu_co8195238.1_g000001 Rmu_sc0000961.1_g000005 Rmu_sc0000961.1_g000010
rosa_roxburghii	Rroxscaffold_5G00386290 Rroxscaffold_5G00386310
rosa_rugosa	Rorug04G0365400
rosa_samantha	Rh4AG426900 Rh4AG427100 Rh4BG437300 Rh4CG454100 Rh4DG435200 Rh4DG435400
rosa_wichuraiana	Rw4G036540 Rw4G036570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	690, 854
Acc36I	ACCTGC	1 cut(s)	886
AccB1I	GGYRCC	1 cut(s)	727
AccII	CGCG	2 cut(s)	627, 681
AciI	CCGC	6 cut(s)	199, 440, 625, 627, 681, 906
AclI	AACGTT	1 cut(s)	708
AclWI	GGATC	2 cut(s)	778, 828
AcsI	RAATTY	2 cut(s)	721, 883
AcuI	CTGAAG	1 cut(s)	396
AfaI	GTAC	2 cut(s)	676, 844
AfiI	CCNNNNNNNGG	2 cut(s)	793, 941
AflIII	ACRYGT	1 cut(s)	839
AgsI	TTSAA	3 cut(s)	597, 775, 889
AjiI	CACGTC	1 cut(s)	686
AjnI	CCWGG	1 cut(s)	361
AluBI	AGCT	9 cut(s)	18, 81, 86, 91, 170, 448, 495, 608, 967
AluI	AGCT	9 cut(s)	18, 81, 86, 91, 170, 448, 495, 608, 967
Alw21I	GWGCWC	3 cut(s)	74, 592, 979
Alw26I	GTCTC	2 cut(s)	169, 862
Alw44I	GTGCAC	1 cut(s)	588
AlwI	GGATC	2 cut(s)	778, 828
AoxI	GGCC	1 cut(s)	553
ApaLI	GTGCAC	1 cut(s)	588
ApeKI	GCWGC	4 cut(s)	185, 398, 698, 902
ApoI	RAATTY	2 cut(s)	721, 883
Asp700I	GAANNNNTTC	1 cut(s)	460
AspS9I	GGNCC	1 cut(s)	428
AsuHPI	GGTGA	2 cut(s)	454, 754
AvaII	GGWCC	1 cut(s)	428
BaeGI	GKGCMC	1 cut(s)	592
BanI	GGYRCC	1 cut(s)	727
BbsI	GAAGAC	1 cut(s)	791
Bbv12I	GWGCWC	3 cut(s)	74, 592, 979
BbvI	GCAGC	4 cut(s)	197, 385, 710, 914
BccI	CCATC	2 cut(s)	175, 913
BceAI	ACGGC	2 cut(s)	377, 404
BcgI	CGANNNNNNTGC	2 cut(s)	512, 546
BciT130I	CCWGG	1 cut(s)	363
BclI	TGATCA	2 cut(s)	811, 912
BcoDI	GTCTC	2 cut(s)	169, 862
BfaI	CTAG	1 cut(s)	402
BfmI	CTRYAG	1 cut(s)	637
BfuAI	ACCTGC	1 cut(s)	886
BisI	GCNGC	5 cut(s)	186, 399, 699, 903, 906
BlpI	GCTNAGC	2 cut(s)	82, 87
BlsI	GCNGC	5 cut(s)	187, 400, 700, 904, 907
Bme1390I	CCNGG	1 cut(s)	363
Bme18I	GGWCC	1 cut(s)	428
BmgBI	CACGTC	1 cut(s)	686
BmgT120I	GGNCC	1 cut(s)	428
BmiI	GGNNCC	1 cut(s)	729
BmrFI	CCNGG	1 cut(s)	363
BmrI	ACTGGG	2 cut(s)	445, 498
BmsI	GCATC	5 cut(s)	226, 248, 397, 649, 815
BmuI	ACTGGG	2 cut(s)	445, 498
BpiI	GAAGAC	1 cut(s)	791
Bpu1102I	GCTNAGC	2 cut(s)	82, 87
BsaAI	YACGTR	1 cut(s)	842
BsaJI	CCNNGG	3 cut(s)	362, 393, 625
BsaWI	WCCGGW	1 cut(s)	584
Bsc4I	CCNNNNNNNGG	2 cut(s)	793, 941
Bse1I	ACTGG	4 cut(s)	440, 504, 648, 946
BseBI	CCWGG	1 cut(s)	363
BseDI	CCNNGG	3 cut(s)	362, 393, 625
BseGI	GGATG	3 cut(s)	186, 195, 412
BseLI	CCNNNNNNNGG	2 cut(s)	793, 941
BseMII	CTCAG	4 cut(s)	51, 96, 180, 623
BseNI	ACTGG	4 cut(s)	440, 504, 648, 946
BseRI	GAGGAG	1 cut(s)	85
BseSI	GKGCMC	1 cut(s)	592
BseXI	GCAGC	4 cut(s)	197, 385, 710, 914
BsgI	GTGCAG	1 cut(s)	399
Bsh1236I	CGCG	2 cut(s)	627, 681
BshFI	GGCC	1 cut(s)	555
BshNI	GGYRCC	1 cut(s)	727
BsiHKAI	GWGCWC	3 cut(s)	74, 592, 979
BsiSI	CCGG	1 cut(s)	585
BslI	CCNNNNNNNGG	2 cut(s)	793, 941
BsmAI	GTCTC	2 cut(s)	169, 862
BsnI	GGCC	1 cut(s)	555
Bsp1286I	GDGCHC	3 cut(s)	74, 592, 979
Bsp143I	GATC	6 cut(s)	138, 783, 811, 833, 869, 912
Bsp1720I	GCTNAGC	2 cut(s)	82, 87
BspACI	CCGC	6 cut(s)	199, 440, 625, 627, 681, 906
BspANI	GGCC	1 cut(s)	555
BspCNI	CTCAG	4 cut(s)	50, 95, 179, 622
BspFNI	CGCG	2 cut(s)	627, 681
BspLI	GGNNCC	1 cut(s)	729
BspMI	ACCTGC	1 cut(s)	886
BspPI	GGATC	2 cut(s)	778, 828
BspT107I	GGYRCC	1 cut(s)	727
BsrI	ACTGG	4 cut(s)	440, 504, 648, 946
BssECI	CCNNGG	3 cut(s)	362, 393, 625
BssMI	GATC	6 cut(s)	138, 783, 811, 833, 869, 912
Bst2UI	CCWGG	1 cut(s)	363
Bst6I	CTCTTC	1 cut(s)	451
BstAPI	GCANNNNNTGC	2 cut(s)	32, 668
BstBAI	YACGTR	1 cut(s)	842
BstC8I	GCNNGC	4 cut(s)	60, 203, 475, 497
BstDEI	CTNAG	6 cut(s)	37, 82, 87, 166, 511, 609
BstDSI	CCRYGG	2 cut(s)	393, 625
BstF5I	GGATG	3 cut(s)	186, 195, 412
BstFNI	CGCG	2 cut(s)	627, 681
BstKTI	GATC	6 cut(s)	141, 786, 814, 836, 872, 915
BstMAI	GTCTC	2 cut(s)	169, 862
BstMBI	GATC	6 cut(s)	138, 783, 811, 833, 869, 912
BstNI	CCWGG	1 cut(s)	363
BstSCI	CCNGG	1 cut(s)	361
BstSFI	CTRYAG	1 cut(s)	637
BstSLI	GKGCMC	1 cut(s)	592
BstUI	CGCG	2 cut(s)	627, 681
BstV1I	GCAGC	4 cut(s)	197, 385, 710, 914
BstV2I	GAAGAC	1 cut(s)	791
BstX2I	RGATCY	1 cut(s)	833
BstYI	RGATCY	1 cut(s)	833
BsuRI	GGCC	1 cut(s)	555
BtgI	CCRYGG	2 cut(s)	393, 625
BtrI	CACGTC	1 cut(s)	686
BtsCI	GGATG	3 cut(s)	186, 195, 412
BtsI	GCAGTG	1 cut(s)	287
BtsIMutI	CAGTG	4 cut(s)	287, 617, 655, 939
BveI	ACCTGC	1 cut(s)	886
Cac8I	GCNNGC	4 cut(s)	60, 203, 475, 497
Cfr13I	GGNCC	1 cut(s)	428
Cfr42I	CCGCGG	1 cut(s)	628
Csp6I	GTAC	2 cut(s)	675, 843
CspCI	CAANNNNNGTGG	2 cut(s)	720, 755
CviAII	CATG	2 cut(s)	212, 910
CviQI	GTAC	2 cut(s)	675, 843
DdeI	CTNAG	6 cut(s)	37, 82, 87, 166, 511, 609
DpnI	GATC	6 cut(s)	140, 785, 813, 835, 871, 914
DpnII	GATC	6 cut(s)	138, 783, 811, 833, 869, 912
DrdI	GACNNNNNNGTC	2 cut(s)	690, 854
DseDI	GACNNNNNNGTC	2 cut(s)	690, 854
Eam1104I	CTCTTC	1 cut(s)	451
EarI	CTCTTC	1 cut(s)	451
EciI	GGCGGA	1 cut(s)	188
Eco32I	GATATC	1 cut(s)	385
Eco47I	GGWCC	1 cut(s)	428
Eco57I	CTGAAG	1 cut(s)	396
EcoRII	CCWGG	1 cut(s)	361
EcoRV	GATATC	1 cut(s)	385
EcoT22I	ATGCAT	1 cut(s)	241
FaeI	CATG	2 cut(s)	215, 913
FaiI	YATR	8 cut(s)	108, 213, 299, 318, 326, 358, 867, 911
FatI	CATG	2 cut(s)	211, 909
FbaI	TGATCA	2 cut(s)	811, 912
Fnu4HI	GCNGC	5 cut(s)	186, 399, 699, 903, 906
FokI	GGATG	3 cut(s)	182, 193, 419
Fsp4HI	GCNGC	5 cut(s)	186, 399, 699, 903, 906
FspBI	CTAG	1 cut(s)	402
GluI	GCNGC	5 cut(s)	186, 399, 699, 903, 906
HaeIII	GGCC	1 cut(s)	555
HapII	CCGG	1 cut(s)	585
Hin1II	CATG	2 cut(s)	215, 913
HindIII	AAGCTT	2 cut(s)	446, 965
HinfI	GANTC	3 cut(s)	321, 461, 633
HpaII	CCGG	1 cut(s)	585
HphI	GGTGA	2 cut(s)	454, 754
Hpy166II	GTNNAC	1 cut(s)	590
Hpy188I	TCNGA	5 cut(s)	143, 180, 566, 811, 862
Hpy188III	TCNNGA	4 cut(s)	431, 775, 787, 916
Hpy8I	GTNNAC	1 cut(s)	590
Hpy99I	CGWCG	1 cut(s)	180
HpyAV	CCTTC	1 cut(s)	787
HpyCH4IV	ACGT	4 cut(s)	175, 685, 708, 841
HpyF3I	CTNAG	6 cut(s)	37, 82, 87, 166, 511, 609
HpySE526I	ACGT	4 cut(s)	175, 685, 708, 841
Hsp92II	CATG	2 cut(s)	215, 913
Ksp22I	TGATCA	2 cut(s)	811, 912
KspI	CCGCGG	1 cut(s)	628
Kzo9I	GATC	6 cut(s)	138, 783, 811, 833, 869, 912
LmnI	GCTCC	1 cut(s)	23
Lsp1109I	GCAGC	4 cut(s)	197, 385, 710, 914
LweI	GCATC	5 cut(s)	226, 248, 397, 649, 815
MaeI	CTAG	1 cut(s)	402
MaeII	ACGT	4 cut(s)	175, 685, 708, 841
MaeIII	GTNAC	3 cut(s)	40, 650, 742
MalI	GATC	6 cut(s)	140, 785, 813, 835, 871, 914
MboI	GATC	6 cut(s)	138, 783, 811, 833, 869, 912
MboII	GAAGA	6 cut(s)	255, 465, 468, 791, 802, 843
MfeI	CAATTG	2 cut(s)	597, 755
MflI	RGATCY	1 cut(s)	833
MhlI	GDGCHC	3 cut(s)	74, 592, 979
MluCI	AATT	4 cut(s)	597, 721, 755, 883
MlyI	GAGTC	1 cut(s)	330
MmeI	TCCRAC	2 cut(s)	158, 403
MnlI	CCTC	9 cut(s)	46, 106, 199, 203, 305, 419, 530, 566, 945
Mph1103I	ATGCAT	1 cut(s)	241
MroXI	GAANNNNTTC	1 cut(s)	460
MseI	TTAA	1 cut(s)	930
MslI	CAYNNNNRTG	1 cut(s)	210
MspA1I	CMGCKG	2 cut(s)	170, 627
MspI	CCGG	1 cut(s)	585
MspR9I	CCNGG	1 cut(s)	363
MunI	CAATTG	2 cut(s)	597, 755
MvaI	CCWGG	1 cut(s)	363
MvnI	CGCG	2 cut(s)	627, 681
NdeII	GATC	6 cut(s)	138, 783, 811, 833, 869, 912
NlaIII	CATG	2 cut(s)	215, 913
NlaIV	GGNNCC	1 cut(s)	729
NmuCI	GTSAC	2 cut(s)	650, 742
NsiI	ATGCAT	1 cut(s)	241
PdmI	GAANNNNTTC	1 cut(s)	460
PfeI	GAWTC	2 cut(s)	461, 633
PkrI	GCNGC	5 cut(s)	187, 400, 700, 904, 907
PleI	GAGTC	1 cut(s)	329
PpsI	GAGTC	1 cut(s)	329
Ppu21I	YACGTR	1 cut(s)	842
Psp1406I	AACGTT	1 cut(s)	708
Psp6I	CCWGG	1 cut(s)	361
PspGI	CCWGG	1 cut(s)	361
PspN4I	GGNNCC	1 cut(s)	729
PspPI	GGNCC	1 cut(s)	428
PsuI	RGATCY	1 cut(s)	833
PvuII	CAGCTG	1 cut(s)	170
RsaI	GTAC	2 cut(s)	676, 844
RsaNI	GTAC	2 cut(s)	675, 843
RseI	CAYNNNNRTG	1 cut(s)	210
SacII	CCGCGG	1 cut(s)	628
SaqAI	TTAA	1 cut(s)	930
SatI	GCNGC	5 cut(s)	186, 399, 699, 903, 906
Sau3AI	GATC	6 cut(s)	138, 783, 811, 833, 869, 912
Sau96I	GGNCC	1 cut(s)	428
SchI	GAGTC	1 cut(s)	330
ScrFI	CCNGG	1 cut(s)	363
SduI	GDGCHC	3 cut(s)	74, 592, 979
SfaNI	GCATC	5 cut(s)	226, 248, 397, 649, 815
SfcI	CTRYAG	1 cut(s)	637
Sfr303I	CCGCGG	1 cut(s)	628
SgrBI	CCGCGG	1 cut(s)	628
SinI	GGWCC	1 cut(s)	428
SmiMI	CAYNNNNRTG	1 cut(s)	210
Sse9I	AATT	4 cut(s)	597, 721, 755, 883
SsiI	CCGC	6 cut(s)	199, 440, 625, 627, 681, 906
SspMI	CTAG	1 cut(s)	402
StyD4I	CCNGG	1 cut(s)	361
TaiI	ACGT	4 cut(s)	178, 688, 711, 844
TaqI	TCGA	5 cut(s)	98, 464, 522, 872, 947
TasI	AATT	4 cut(s)	597, 721, 755, 883
TauI	GCSGC	1 cut(s)	908
TfiI	GAWTC	2 cut(s)	461, 633
Tru1I	TTAA	1 cut(s)	930
Tru9I	TTAA	1 cut(s)	930
TscAI	CASTG	4 cut(s)	294, 617, 655, 946
TseFI	GTSAC	2 cut(s)	650, 742
TseI	GCWGC	4 cut(s)	185, 398, 698, 902
Tsp45I	GTSAC	2 cut(s)	650, 742
TspDTI	ATGAA	2 cut(s)	20, 314
TspRI	CASTG	4 cut(s)	294, 617, 655, 946
VneI	GTGCAC	1 cut(s)	588
VpaK11BI	GGWCC	1 cut(s)	428
XapI	RAATTY	2 cut(s)	721, 883
XcmI	CCANNNNNNNNNTGG	2 cut(s)	343, 916
XmnI	GAANNNNTTC	1 cut(s)	460
XspI	CTAG	1 cut(s)	402
Zsp2I	ATGCAT	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.