Rh4AG426900

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0006076
Physical Location & Seq
Forward (+)
72305175 .. 72306338
1164 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG426900.1

Sequence Viewer

Length: 789 bp
ATGATGAAGTCTTTTAGCTCCAATGCAAATGTTGCCTTAGTTGCTTTGCTGTTGTTGCTTGCCCTGATGAGCACAGCAAGCTCAGCTAAGCTCTCCTCGACATTTTATGACAAAGCCTGTCCAAATGCTCTCGCTACTATCAGAAAATCAATAAGAACAGCAGTCTCAGCAGAACGTCGGATGGCAGCCTCCCTAATCCGCTTCCATTTCCATGATTGCTTTGTTCAGGTTGGAGGTCCAGACTGGGCGGTGAAGCTTGGAAGAAGAGATTCGACCACAGCAAGCAAAACTCTAGCTGAAAGCTCGCTTCCCAGTTTCTTAGACAGCCTCGAAAGCCTTGCTAACAGATTTGCTGGTAATGGCCTCAATATCAGAGATTTGGTTGCGCTATCCGGTGCACATTCAATTGGACAAGCTCAGTGCTTCACATTCCGCGGTAGAATCTACAGCAACACCAGTGACATTGATGCAAACTTTGCTCGTACTCGCGGACGTGGTTGTCCAGCAGCAAATAACGTTGGTGATGCAAATTTGGCACCACTTGATTTGGTGACACCTAATCAATTGGACAACAGCTACTTCAAGAACTTGATCCAGAAGAAGGGTCTTCTTGCATCTGATCAAGTTCTCTTTAGTGGAGGATCCACAGACAGCATTGTCTCGGAGTATAGCTCAAAACCTGCAAACTTCATGGCTGATTTTGCCGCCGCCATGATCAAGATGGGAAACATTAACCCTCTCACTGGCTCAAATGGGCAGATAAGAAGGATATGTAGTGCTCTCAACTAA

Protein Analysis

262

Amino Acids

27.97

Weight (kDa)

9.56

Isoelectric Point (pI)

30.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 77 - 225 3.3e-40 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 498, 656
Acc36I ACCTGC 1 cut(s) 688
AccB1I GGYRCC 1 cut(s) 535
AccII CGCG 2 cut(s) 435, 489
AciI CCGC 7 cut(s) 199, 248, 433, 435, 489, 705, 708
AclI AACGTT 1 cut(s) 516
AclWI GGATC 3 cut(s) 586, 636, 649
AcsI RAATTY 1 cut(s) 529
AfaI GTAC 1 cut(s) 484
AfiI CCNNNNNNNGG 2 cut(s) 601, 743
AgsI TTSAA 2 cut(s) 405, 583
AjiI CACGTC 1 cut(s) 494
Alw21I GWGCWC 3 cut(s) 74, 400, 781
Alw26I GTCTC 2 cut(s) 169, 664
Alw44I GTGCAC 1 cut(s) 396
AlwI GGATC 3 cut(s) 586, 636, 649
AoxI GGCC 1 cut(s) 361
ApaLI GTGCAC 1 cut(s) 396
ApeKI GCWGC 2 cut(s) 185, 506
ApoI RAATTY 1 cut(s) 529
Asp700I GAANNNNTTC 1 cut(s) 268
AspLEI GCGC 1 cut(s) 388
AspS9I GGNCC 1 cut(s) 236
AsuHPI GGTGA 3 cut(s) 262, 533, 562
AvaII GGWCC 1 cut(s) 236
BaeGI GKGCMC 1 cut(s) 400
BamHI GGATCC 1 cut(s) 641
BanI GGYRCC 1 cut(s) 535
BbsI GAAGAC 1 cut(s) 599
Bbv12I GWGCWC 3 cut(s) 74, 400, 781
BbvI GCAGC 2 cut(s) 197, 518
BccI CCATC 2 cut(s) 175, 715
BcgI CGANNNNNNTGC 2 cut(s) 320, 354
BclI TGATCA 2 cut(s) 619, 714
BcoDI GTCTC 2 cut(s) 169, 664
BfaI CTAG 1 cut(s) 293
BfmI CTRYAG 1 cut(s) 445
BfuAI ACCTGC 1 cut(s) 688
BisI GCNGC 4 cut(s) 186, 507, 705, 708
BlpI GCTNAGC 2 cut(s) 82, 87
BlsI GCNGC 4 cut(s) 187, 508, 706, 709
Bme18I GGWCC 1 cut(s) 236
BmgBI CACGTC 1 cut(s) 494
BmgT120I GGNCC 1 cut(s) 236
BmiI GGNNCC 2 cut(s) 537, 643
BmrI ACTGGG 2 cut(s) 253, 306
BmsI GCATC 3 cut(s) 457, 514, 623
BmuI ACTGGG 2 cut(s) 253, 306
BpiI GAAGAC 1 cut(s) 599
BplI GAGNNNNNCTC 2 cut(s) 656, 688
Bpu1102I GCTNAGC 2 cut(s) 82, 87
BsaJI CCNNGG 1 cut(s) 433
BsaWI WCCGGW 1 cut(s) 392
Bsc4I CCNNNNNNNGG 2 cut(s) 601, 743
Bse1I ACTGG 4 cut(s) 248, 312, 456, 748
BseDI CCNNGG 1 cut(s) 433
BseGI GGATG 1 cut(s) 186
BseLI CCNNNNNNNGG 2 cut(s) 601, 743
BseMII CTCAG 3 cut(s) 96, 180, 431
BseNI ACTGG 4 cut(s) 248, 312, 456, 748
BseRI GAGGAG 1 cut(s) 85
BseSI GKGCMC 1 cut(s) 400
BseXI GCAGC 2 cut(s) 197, 518
Bsh1236I CGCG 2 cut(s) 435, 489
BshFI GGCC 1 cut(s) 363
BshNI GGYRCC 1 cut(s) 535
BsiHKAI GWGCWC 3 cut(s) 74, 400, 781
BsiSI CCGG 1 cut(s) 393
BslI CCNNNNNNNGG 2 cut(s) 601, 743
BsmAI GTCTC 2 cut(s) 169, 664
BsnI GGCC 1 cut(s) 363
Bsp1286I GDGCHC 3 cut(s) 74, 400, 781
Bsp143I GATC 4 cut(s) 591, 619, 641, 714
Bsp1720I GCTNAGC 2 cut(s) 82, 87
BspACI CCGC 7 cut(s) 199, 248, 433, 435, 489, 705, 708
BspANI GGCC 1 cut(s) 363
BspCNI CTCAG 3 cut(s) 95, 179, 430
BspFNI CGCG 2 cut(s) 435, 489
BspLI GGNNCC 2 cut(s) 537, 643
BspMI ACCTGC 1 cut(s) 688
BspPI GGATC 3 cut(s) 586, 636, 649
BspT107I GGYRCC 1 cut(s) 535
BsrI ACTGG 4 cut(s) 248, 312, 456, 748
BssECI CCNNGG 1 cut(s) 433
BssMI GATC 4 cut(s) 591, 619, 641, 714
Bst6I CTCTTC 1 cut(s) 259
BstAPI GCANNNNNTGC 2 cut(s) 32, 476
BstC8I GCNNGC 4 cut(s) 60, 79, 283, 305
BstDEI CTNAG 6 cut(s) 37, 82, 87, 166, 319, 417
BstDSI CCRYGG 1 cut(s) 433
BstF5I GGATG 1 cut(s) 186
BstFNI CGCG 2 cut(s) 435, 489
BstHHI GCGC 1 cut(s) 388
BstKTI GATC 4 cut(s) 594, 622, 644, 717
BstMAI GTCTC 2 cut(s) 169, 664
BstMBI GATC 4 cut(s) 591, 619, 641, 714
BstSFI CTRYAG 1 cut(s) 445
BstSLI GKGCMC 1 cut(s) 400
BstUI CGCG 2 cut(s) 435, 489
BstV1I GCAGC 2 cut(s) 197, 518
BstV2I GAAGAC 1 cut(s) 599
BstX2I RGATCY 1 cut(s) 641
BstYI RGATCY 1 cut(s) 641
BsuRI GGCC 1 cut(s) 363
BtgI CCRYGG 1 cut(s) 433
BtrI CACGTC 1 cut(s) 494
BtsCI GGATG 1 cut(s) 186
BtsIMutI CAGTG 3 cut(s) 425, 463, 741
BveI ACCTGC 1 cut(s) 688
Cac8I GCNNGC 4 cut(s) 60, 79, 283, 305
CfoI GCGC 1 cut(s) 388
Cfr13I GGNCC 1 cut(s) 236
Cfr42I CCGCGG 1 cut(s) 436
Csp6I GTAC 1 cut(s) 483
CspCI CAANNNNNGTGG 2 cut(s) 528, 563
CviAII CATG 3 cut(s) 212, 691, 712
CviQI GTAC 1 cut(s) 483
DdeI CTNAG 6 cut(s) 37, 82, 87, 166, 319, 417
DpnI GATC 4 cut(s) 593, 621, 643, 716
DpnII GATC 4 cut(s) 591, 619, 641, 714
DrdI GACNNNNNNGTC 2 cut(s) 498, 656
DseDI GACNNNNNNGTC 2 cut(s) 498, 656
Eam1104I CTCTTC 1 cut(s) 259
EarI CTCTTC 1 cut(s) 259
Eco47I GGWCC 1 cut(s) 236
FaeI CATG 3 cut(s) 215, 694, 715
FaiI YATR 6 cut(s) 108, 213, 669, 692, 713, 772
FatI CATG 3 cut(s) 211, 690, 711
FbaI TGATCA 2 cut(s) 619, 714
Fnu4HI GCNGC 4 cut(s) 186, 507, 705, 708
FokI GGATG 1 cut(s) 193
Fsp4HI GCNGC 4 cut(s) 186, 507, 705, 708
FspBI CTAG 1 cut(s) 293
GlaI GCGC 1 cut(s) 387
GluI GCNGC 4 cut(s) 186, 507, 705, 708
HaeIII GGCC 1 cut(s) 363
HapII CCGG 1 cut(s) 393
HhaI GCGC 1 cut(s) 388
Hin1II CATG 3 cut(s) 215, 694, 715
Hin6I GCGC 1 cut(s) 386
HinP1I GCGC 1 cut(s) 386
HindIII AAGCTT 1 cut(s) 254
HinfI GANTC 2 cut(s) 269, 441
HpaII CCGG 1 cut(s) 393
HphI GGTGA 3 cut(s) 262, 533, 562
Hpy166II GTNNAC 1 cut(s) 398
Hpy188I TCNGA 5 cut(s) 143, 180, 374, 619, 664
Hpy188III TCNNGA 4 cut(s) 239, 583, 595, 718
Hpy8I GTNNAC 1 cut(s) 398
Hpy99I CGWCG 1 cut(s) 180
HpyAV CCTTC 2 cut(s) 595, 759
HpyCH4IV ACGT 3 cut(s) 175, 493, 516
HpyCH4V TGCA 6 cut(s) 26, 398, 470, 527, 614, 683
HpyF3I CTNAG 6 cut(s) 37, 82, 87, 166, 319, 417
HpySE526I ACGT 3 cut(s) 175, 493, 516
Hsp92II CATG 3 cut(s) 215, 694, 715
HspAI GCGC 1 cut(s) 386
Ksp22I TGATCA 2 cut(s) 619, 714
KspI CCGCGG 1 cut(s) 436
Kzo9I GATC 4 cut(s) 591, 619, 641, 714
LmnI GCTCC 1 cut(s) 23
Lsp1109I GCAGC 2 cut(s) 197, 518
LweI GCATC 3 cut(s) 457, 514, 623
MaeI CTAG 1 cut(s) 293
MaeII ACGT 3 cut(s) 175, 493, 516
MaeIII GTNAC 2 cut(s) 458, 550
MalI GATC 4 cut(s) 593, 621, 643, 716
MboI GATC 4 cut(s) 591, 619, 641, 714
MboII GAAGA 4 cut(s) 273, 276, 599, 610
MfeI CAATTG 2 cut(s) 405, 563
MflI RGATCY 1 cut(s) 641
MhlI GDGCHC 3 cut(s) 74, 400, 781
MluCI AATT 3 cut(s) 405, 529, 563
MmeI TCCRAC 2 cut(s) 158, 211
MnlI CCTC 7 cut(s) 106, 199, 227, 338, 374, 632, 747
MroXI GAANNNNTTC 1 cut(s) 268
MseI TTAA 1 cut(s) 732
MslI CAYNNNNRTG 1 cut(s) 210
MspA1I CMGCKG 1 cut(s) 435
MspI CCGG 1 cut(s) 393
MunI CAATTG 2 cut(s) 405, 563
MvnI CGCG 2 cut(s) 435, 489
NdeII GATC 4 cut(s) 591, 619, 641, 714
NlaIII CATG 3 cut(s) 215, 694, 715
NlaIV GGNNCC 2 cut(s) 537, 643
NmuCI GTSAC 2 cut(s) 458, 550
PdmI GAANNNNTTC 1 cut(s) 268
PfeI GAWTC 2 cut(s) 269, 441
PkrI GCNGC 4 cut(s) 187, 508, 706, 709
Psp1406I AACGTT 1 cut(s) 516
PspN4I GGNNCC 2 cut(s) 537, 643
PspPI GGNCC 1 cut(s) 236
PsuI RGATCY 1 cut(s) 641
RsaI GTAC 1 cut(s) 484
RsaNI GTAC 1 cut(s) 483
RseI CAYNNNNRTG 1 cut(s) 210
SacII CCGCGG 1 cut(s) 436
SaqAI TTAA 1 cut(s) 732
SatI GCNGC 4 cut(s) 186, 507, 705, 708
Sau3AI GATC 4 cut(s) 591, 619, 641, 714
Sau96I GGNCC 1 cut(s) 236
SduI GDGCHC 3 cut(s) 74, 400, 781
SfaNI GCATC 3 cut(s) 457, 514, 623
SfcI CTRYAG 1 cut(s) 445
Sfr303I CCGCGG 1 cut(s) 436
SgrBI CCGCGG 1 cut(s) 436
SinI GGWCC 1 cut(s) 236
SmiMI CAYNNNNRTG 1 cut(s) 210
Sse9I AATT 3 cut(s) 405, 529, 563
SsiI CCGC 7 cut(s) 199, 248, 433, 435, 489, 705, 708
SspMI CTAG 1 cut(s) 293
TaiI ACGT 3 cut(s) 178, 496, 519
TaqI TCGA 3 cut(s) 98, 272, 330
TasI AATT 3 cut(s) 405, 529, 563
TauI GCSGC 2 cut(s) 707, 710
TfiI GAWTC 2 cut(s) 269, 441
Tru1I TTAA 1 cut(s) 732
Tru9I TTAA 1 cut(s) 732
TscAI CASTG 3 cut(s) 425, 463, 748
TseFI GTSAC 2 cut(s) 458, 550
TseI GCWGC 2 cut(s) 185, 506
Tsp45I GTSAC 2 cut(s) 458, 550
TspDTI ATGAA 2 cut(s) 20, 679
TspRI CASTG 3 cut(s) 425, 463, 748
VneI GTGCAC 1 cut(s) 396
VpaK11BI GGWCC 1 cut(s) 236
XapI RAATTY 1 cut(s) 529
XcmI CCANNNNNNNNNTGG 1 cut(s) 718
XmnI GAANNNNTTC 1 cut(s) 268
XspI CTAG 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.