Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0006076

Physical Location & Seq

Genomic Coordinates Forward (+)

72339296 .. 72340454

Gene Structure 1159 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG427100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGAAGTACTTCAGCTCTAATGCAAATGTCGCCTCTGTTGCACTGCTGTTGTTGCTTGCCTTGATGAGCACAACCACCTCTGCTCAGCTCTCCTCGACATTTTATGACAAAGCCTGTCCAAATGCTCTCGCTACGATCAGAAAATCAATAAGAACGGCAGTTTCAGCTGAACGTCGGATGGCAGCCTCCCTAATCCGCCTGCATTTCCATGATTGCTTTGTTCAGGTTGGAGGTCCAGACTGGGCGGTGAAGCTTGGAAGAAGAGATTCGACCACAGCAAGCAAAACTCTAGCTGAAAGCTCACTTCCCAGTTTCTTAGACAGCCTCGAAAGCCTTGCTAACAGATTTTCTGGTAATGGCCTCAGTGTCAGAGATTTGGTTGCACTATCCGGTGCACATTCAATTGGACAAGCTCAGTGCTTCACATTCCGCGGTAGAATCTACAGCAACACTAGTGACATTGATGCAAACTTTGCTCGTACTCGCGGACGTGGTTGTCCAGCAGCAAATAACGTTGGTAATGCAAATTTGGCACCACTTGATTTGGTGACACCTAATCAATTGGACAACAACTACTTCAAGAACTTGATCCAGAAGAAGGGTCTTCTTGCATCTGATCAAGTTCTCTTCAGTGGAGGATCCACAGACAGCATTGTCTCGGAGTATAGCTCAAAACCTGCAAACTTCAAGGCTGATTTTGCCGCCGCCATGATCAAGATGGGAAACATTAACCCTCTCACTGGCTCAAATGGACAGATAAGAAAGATATGTAGTGCTCTCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0006950 GO:0008150 GO:0009628 GO:0009987 GO:0033554 GO:0036293 GO:0036294 GO:0042221 GO:0050896 GO:0051716 GO:0070482 GO:0070887 GO:0071453 GO:0071456

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

261

Amino Acids

27.87

Weight (kDa)

9.61

Isoelectric Point (pI)

24.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	46 - 75	8e-06	Peroxidase
peroxidase	PF00141	76 - 224	6.6e-40	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006076)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14540 AT1G14550
fragaria_vesca	FvH4_2g30540 FvH4_4g13860 FvH4_4g36130
malus_domestica	MD13G1011000.v1.1 MD13G1011200.v1.1
prunus_persica	Prupe.1G341900_v2.0.a1
pyrus_communis	pycom13g00920
rosa_chinensis	RchiOBHm_Chr4g0445821 RchiOBHm_Chr4g0445871
rosa_laevigata	RLG00000005706 RLG00000005707
rosa_multiflora	Rmu_co8195238.1_g000001 Rmu_sc0000961.1_g000005 Rmu_sc0000961.1_g000010
rosa_roxburghii	Rroxscaffold_5G00386290 Rroxscaffold_5G00386310
rosa_rugosa	Rorug04G0365400
rosa_samantha	Rh4AG426900 Rh4AG427100 Rh4BG437300 Rh4CG454100 Rh4DG435200 Rh4DG435400
rosa_wichuraiana	Rw4G036540 Rw4G036570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	495, 653
Acc36I	ACCTGC	1 cut(s)	685
AccB1I	GGYRCC	1 cut(s)	532
AccII	CGCG	2 cut(s)	432, 486
AciI	CCGC	7 cut(s)	196, 245, 430, 432, 486, 702, 705
AclI	AACGTT	1 cut(s)	513
AclWI	GGATC	3 cut(s)	583, 633, 646
AcsI	RAATTY	1 cut(s)	526
AcuI	CTGAAG	1 cut(s)	613
AfaI	GTAC	2 cut(s)	8, 481
AfiI	CCNNNNNNNGG	2 cut(s)	598, 740
AgsI	TTSAA	3 cut(s)	402, 580, 688
AhlI	ACTAGT	1 cut(s)	452
AjiI	CACGTC	1 cut(s)	491
AluBI	AGCT	8 cut(s)	15, 88, 167, 253, 293, 300, 413, 669
AluI	AGCT	8 cut(s)	15, 88, 167, 253, 293, 300, 413, 669
Alw21I	GWGCWC	3 cut(s)	71, 397, 778
Alw26I	GTCTC	1 cut(s)	661
Alw44I	GTGCAC	1 cut(s)	393
AlwI	GGATC	3 cut(s)	583, 633, 646
AoxI	GGCC	1 cut(s)	358
ApaLI	GTGCAC	1 cut(s)	393
ApeKI	GCWGC	2 cut(s)	182, 503
ApoI	RAATTY	1 cut(s)	526
Asp700I	GAANNNNTTC	2 cut(s)	8, 265
AspS9I	GGNCC	1 cut(s)	233
AsuHPI	GGTGA	2 cut(s)	259, 559
AvaII	GGWCC	1 cut(s)	233
BaeGI	GKGCMC	1 cut(s)	397
BamHI	GGATCC	1 cut(s)	638
BanI	GGYRCC	1 cut(s)	532
BbsI	GAAGAC	1 cut(s)	596
Bbv12I	GWGCWC	3 cut(s)	71, 397, 778
BbvI	GCAGC	2 cut(s)	194, 515
BccI	CCATC	2 cut(s)	172, 712
BceAI	ACGGC	1 cut(s)	171
BcgI	CGANNNNNNTGC	2 cut(s)	317, 351
BclI	TGATCA	2 cut(s)	616, 711
BcoDI	GTCTC	1 cut(s)	661
BcuI	ACTAGT	1 cut(s)	452
BfaI	CTAG	2 cut(s)	290, 453
BfmI	CTRYAG	1 cut(s)	442
BfuAI	ACCTGC	1 cut(s)	685
BisI	GCNGC	4 cut(s)	183, 504, 702, 705
BlpI	GCTNAGC	1 cut(s)	84
BlsI	GCNGC	4 cut(s)	184, 505, 703, 706
BmcAI	AGTACT	1 cut(s)	8
Bme18I	GGWCC	1 cut(s)	233
BmgBI	CACGTC	1 cut(s)	491
BmgT120I	GGNCC	1 cut(s)	233
BmiI	GGNNCC	2 cut(s)	534, 640
BmrI	ACTGGG	2 cut(s)	250, 303
BmsI	GCATC	2 cut(s)	454, 620
BmuI	ACTGGG	2 cut(s)	250, 303
BpiI	GAAGAC	1 cut(s)	596
BplI	GAGNNNNNCTC	2 cut(s)	653, 685
Bpu1102I	GCTNAGC	1 cut(s)	84
BsaJI	CCNNGG	1 cut(s)	430
BsaWI	WCCGGW	1 cut(s)	389
Bsc4I	CCNNNNNNNGG	2 cut(s)	598, 740
Bse1I	ACTGG	3 cut(s)	245, 309, 745
BseDI	CCNNGG	1 cut(s)	430
BseGI	GGATG	1 cut(s)	183
BseLI	CCNNNNNNNGG	2 cut(s)	598, 740
BseMII	CTCAG	3 cut(s)	98, 376, 428
BseNI	ACTGG	3 cut(s)	245, 309, 745
BseRI	GAGGAG	1 cut(s)	82
BseSI	GKGCMC	1 cut(s)	397
BseXI	GCAGC	2 cut(s)	194, 515
Bsh1236I	CGCG	2 cut(s)	432, 486
BshFI	GGCC	1 cut(s)	360
BshNI	GGYRCC	1 cut(s)	532
BsiHKAI	GWGCWC	3 cut(s)	71, 397, 778
BsiSI	CCGG	1 cut(s)	390
BslI	CCNNNNNNNGG	2 cut(s)	598, 740
BsmAI	GTCTC	1 cut(s)	661
BsnI	GGCC	1 cut(s)	360
Bsp1286I	GDGCHC	3 cut(s)	71, 397, 778
Bsp143I	GATC	5 cut(s)	135, 588, 616, 638, 711
Bsp1720I	GCTNAGC	1 cut(s)	84
BspACI	CCGC	7 cut(s)	196, 245, 430, 432, 486, 702, 705
BspANI	GGCC	1 cut(s)	360
BspCNI	CTCAG	3 cut(s)	97, 375, 427
BspFNI	CGCG	2 cut(s)	432, 486
BspLI	GGNNCC	2 cut(s)	534, 640
BspMI	ACCTGC	1 cut(s)	685
BspPI	GGATC	3 cut(s)	583, 633, 646
BspT107I	GGYRCC	1 cut(s)	532
BsrI	ACTGG	3 cut(s)	245, 309, 745
BssECI	CCNNGG	1 cut(s)	430
BssMI	GATC	5 cut(s)	135, 588, 616, 638, 711
Bst6I	CTCTTC	2 cut(s)	256, 632
BstAPI	GCANNNNNTGC	1 cut(s)	473
BstC8I	GCNNGC	3 cut(s)	57, 200, 280
BstDEI	CTNAG	4 cut(s)	84, 316, 362, 414
BstDSI	CCRYGG	1 cut(s)	430
BstF5I	GGATG	1 cut(s)	183
BstFNI	CGCG	2 cut(s)	432, 486
BstKTI	GATC	5 cut(s)	138, 591, 619, 641, 714
BstMAI	GTCTC	1 cut(s)	661
BstMBI	GATC	5 cut(s)	135, 588, 616, 638, 711
BstMWI	GCNNNNNNNGC	8 cut(s)	29, 38, 52, 164, 330, 473, 530, 698
BstSFI	CTRYAG	1 cut(s)	442
BstSLI	GKGCMC	1 cut(s)	397
BstUI	CGCG	2 cut(s)	432, 486
BstV1I	GCAGC	2 cut(s)	194, 515
BstV2I	GAAGAC	1 cut(s)	596
BstX2I	RGATCY	1 cut(s)	638
BstYI	RGATCY	1 cut(s)	638
BsuRI	GGCC	1 cut(s)	360
BtgI	CCRYGG	1 cut(s)	430
BtrI	CACGTC	1 cut(s)	491
BtsCI	GGATG	1 cut(s)	183
BtsI	GCAGTG	1 cut(s)	41
BtsIMutI	CAGTG	5 cut(s)	41, 370, 422, 637, 738
BveI	ACCTGC	1 cut(s)	685
Cac8I	GCNNGC	3 cut(s)	57, 200, 280
Cfr13I	GGNCC	1 cut(s)	233
Cfr42I	CCGCGG	1 cut(s)	433
Csp6I	GTAC	2 cut(s)	7, 480
CspCI	CAANNNNNGTGG	2 cut(s)	525, 560
CviAII	CATG	2 cut(s)	209, 709
CviQI	GTAC	2 cut(s)	7, 480
DdeI	CTNAG	4 cut(s)	84, 316, 362, 414
DpnI	GATC	5 cut(s)	137, 590, 618, 640, 713
DpnII	GATC	5 cut(s)	135, 588, 616, 638, 711
DrdI	GACNNNNNNGTC	2 cut(s)	495, 653
DseDI	GACNNNNNNGTC	2 cut(s)	495, 653
Eam1104I	CTCTTC	2 cut(s)	256, 632
EarI	CTCTTC	2 cut(s)	256, 632
EciI	GGCGGA	1 cut(s)	185
Eco47I	GGWCC	1 cut(s)	233
Eco57I	CTGAAG	1 cut(s)	613
FaeI	CATG	2 cut(s)	212, 712
FaiI	YATR	5 cut(s)	105, 210, 666, 710, 769
FatI	CATG	2 cut(s)	208, 708
FbaI	TGATCA	2 cut(s)	616, 711
Fnu4HI	GCNGC	4 cut(s)	183, 504, 702, 705
FokI	GGATG	1 cut(s)	190
Fsp4HI	GCNGC	4 cut(s)	183, 504, 702, 705
FspBI	CTAG	2 cut(s)	290, 453
GluI	GCNGC	4 cut(s)	183, 504, 702, 705
HaeIII	GGCC	1 cut(s)	360
HapII	CCGG	1 cut(s)	390
Hin1II	CATG	2 cut(s)	212, 712
HindIII	AAGCTT	1 cut(s)	251
HinfI	GANTC	2 cut(s)	266, 438
HpaII	CCGG	1 cut(s)	390
HphI	GGTGA	2 cut(s)	259, 559
Hpy166II	GTNNAC	1 cut(s)	395
Hpy188I	TCNGA	5 cut(s)	140, 177, 371, 616, 661
Hpy188III	TCNNGA	4 cut(s)	236, 580, 592, 715
Hpy8I	GTNNAC	1 cut(s)	395
Hpy99I	CGWCG	1 cut(s)	177
HpyAV	CCTTC	1 cut(s)	592
HpyCH4IV	ACGT	3 cut(s)	172, 490, 513
HpyCH4V	TGCA	9 cut(s)	23, 41, 202, 383, 395, 467, 524, 611, 680
HpyF10VI	GCNNNNNNNGC	8 cut(s)	29, 38, 52, 164, 330, 473, 530, 698
HpyF3I	CTNAG	4 cut(s)	84, 316, 362, 414
HpySE526I	ACGT	3 cut(s)	172, 490, 513
Hsp92II	CATG	2 cut(s)	212, 712
Ksp22I	TGATCA	2 cut(s)	616, 711
KspI	CCGCGG	1 cut(s)	433
Kzo9I	GATC	5 cut(s)	135, 588, 616, 638, 711
Lsp1109I	GCAGC	2 cut(s)	194, 515
LweI	GCATC	2 cut(s)	454, 620
MaeI	CTAG	2 cut(s)	290, 453
MaeII	ACGT	3 cut(s)	172, 490, 513
MaeIII	GTNAC	2 cut(s)	455, 547
MalI	GATC	5 cut(s)	137, 590, 618, 640, 713
MboI	GATC	5 cut(s)	135, 588, 616, 638, 711
MboII	GAAGA	5 cut(s)	270, 273, 596, 607, 619
MfeI	CAATTG	2 cut(s)	402, 560
MflI	RGATCY	1 cut(s)	638
MhlI	GDGCHC	3 cut(s)	71, 397, 778
MluCI	AATT	3 cut(s)	402, 526, 560
MmeI	TCCRAC	2 cut(s)	155, 208
MnlI	CCTC	9 cut(s)	43, 88, 103, 196, 224, 335, 371, 629, 744
MroXI	GAANNNNTTC	2 cut(s)	8, 265
MseI	TTAA	1 cut(s)	729
MslI	CAYNNNNRTG	1 cut(s)	207
MspA1I	CMGCKG	2 cut(s)	167, 432
MspI	CCGG	1 cut(s)	390
MunI	CAATTG	2 cut(s)	402, 560
MvnI	CGCG	2 cut(s)	432, 486
MwoI	GCNNNNNNNGC	8 cut(s)	29, 38, 52, 164, 330, 473, 530, 698
NdeII	GATC	5 cut(s)	135, 588, 616, 638, 711
NlaIII	CATG	2 cut(s)	212, 712
NlaIV	GGNNCC	2 cut(s)	534, 640
NmuCI	GTSAC	2 cut(s)	455, 547
PdmI	GAANNNNTTC	2 cut(s)	8, 265
PfeI	GAWTC	2 cut(s)	266, 438
PkrI	GCNGC	4 cut(s)	184, 505, 703, 706
Psp1406I	AACGTT	1 cut(s)	513
PspN4I	GGNNCC	2 cut(s)	534, 640
PspPI	GGNCC	1 cut(s)	233
PsuI	RGATCY	1 cut(s)	638
PvuII	CAGCTG	1 cut(s)	167
RsaI	GTAC	2 cut(s)	8, 481
RsaNI	GTAC	2 cut(s)	7, 480
RseI	CAYNNNNRTG	1 cut(s)	207
SacII	CCGCGG	1 cut(s)	433
SaqAI	TTAA	1 cut(s)	729
SatI	GCNGC	4 cut(s)	183, 504, 702, 705
Sau3AI	GATC	5 cut(s)	135, 588, 616, 638, 711
Sau96I	GGNCC	1 cut(s)	233
ScaI	AGTACT	1 cut(s)	8
SduI	GDGCHC	3 cut(s)	71, 397, 778
SfaNI	GCATC	2 cut(s)	454, 620
SfcI	CTRYAG	1 cut(s)	442
Sfr303I	CCGCGG	1 cut(s)	433
SgrBI	CCGCGG	1 cut(s)	433
SinI	GGWCC	1 cut(s)	233
SmiMI	CAYNNNNRTG	1 cut(s)	207
SpeI	ACTAGT	1 cut(s)	452
Sse9I	AATT	3 cut(s)	402, 526, 560
SsiI	CCGC	7 cut(s)	196, 245, 430, 432, 486, 702, 705
SspMI	CTAG	2 cut(s)	290, 453
TaiI	ACGT	3 cut(s)	175, 493, 516
TaqI	TCGA	3 cut(s)	95, 269, 327
TasI	AATT	3 cut(s)	402, 526, 560
TatI	WGTACW	1 cut(s)	6
TauI	GCSGC	2 cut(s)	704, 707
TfiI	GAWTC	2 cut(s)	266, 438
Tru1I	TTAA	1 cut(s)	729
Tru9I	TTAA	1 cut(s)	729
TscAI	CASTG	5 cut(s)	48, 370, 422, 637, 745
TseFI	GTSAC	2 cut(s)	455, 547
TseI	GCWGC	2 cut(s)	182, 503
Tsp45I	GTSAC	2 cut(s)	455, 547
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	5 cut(s)	48, 370, 422, 637, 745
VneI	GTGCAC	1 cut(s)	393
VpaK11BI	GGWCC	1 cut(s)	233
XapI	RAATTY	1 cut(s)	526
XcmI	CCANNNNNNNNNTGG	1 cut(s)	715
XmnI	GAANNNNTTC	2 cut(s)	8, 265
XspI	CTAG	2 cut(s)	290, 453
ZrmI	AGTACT	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.