FvH4_2g30540

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0006076
Physical Location & Seq
Forward (+)
23631963 .. 23634423
2461 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g30540.t1

Sequence Viewer

Length: 984 bp
ATGATGAAGTCCTTTAGCTACAATGCAAATGTTGCCTCAGTTGCACTGCTGTTGCTGCTTGCCCTGATGAGCACAACAAGCTCAGCTCATCTCTCCTCGACATTTTATAACAAAGCCTGTCCAAATGCTCTCGCTACCATTAGAAAATCCATAAGAACAGCAGTGTCAGCCGAACGTCGCATGGCAGCCTCCCTAGTCCGCCTGCATTTCCATGACTGCTTTGTTCAGGGTTGTGATGCATCAATCTTACTCGACGATACTGCTACAATCATAGGCGAAAAGAATGCACTGCCTAATCTGAACTCTGTGAGAGGATATGAAGTCATTGATGATGCCAAGGCTGCAGTGGAGAAACTATGTCCTGGTGTTGTTTCTTGTGCAGATATCGTTGCCGTGGCTGCTAGGGATGCTTCAGTTGCTGTTGGAGGTCCAAGCTGGGCGGTGAAGCTTGGAAGAAGGGATTCGACCACAGCAAGCAAAACTCTAGCTGAAAGCTCTCTTCCCAGTTTCTTAGACAACCTCGAAAGCCTTACCAACAGATTCGCTGGTTTAGGCCTCAATGTCAGAGACTTGGTTGCACTCTCGGGTGCACATTCAATTGGACAAGCTCAGTGCTTCACATTCCGTGACAGAATCTACAACAAAACCAGTGACATTGATGCAAACTTTGCTAGTACTCGCAAAAGTAGTTGTCCAGCAGAAGCTAATGTTGGTAATGCAAATTTGGCAGCACTAGATTTGGTGACACCAAATCAGTTAGACAACAACTACTACAAGAACTTGATCCAGAAGAAGGGTCTTCTTGCGTCCGATCAAGTTCTCTATAGTGGAGGATCTACTGACAGCATTGTCTCAGAGTATAGCTCAAAACCTGCAAAGTTCATTGCTGATTTTGCGACCGCCATGATCAAGATGGGAAACATTAACCCTCTCACTGGCTCAAATGGGCAGATAAGAAGGATTTGTAGTGCTCTCAACTACTAA

Protein Analysis

328

Amino Acids

34.78

Weight (kDa)

8.72

Isoelectric Point (pI)

29.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 47 - 289 1.9e-82 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 108
AasI GACNNNNNNGTC 1 cut(s) 848
Acc36I ACCTGC 1 cut(s) 880
AciI CCGC 3 cut(s) 199, 440, 900
AclWI GGATC 2 cut(s) 778, 841
AcsI RAATTY 1 cut(s) 721
AcuI CTGAAG 1 cut(s) 396
AfaI GTAC 1 cut(s) 676
AfiI CCNNNNNNNGG 2 cut(s) 793, 935
AgsI TTSAA 1 cut(s) 597
AjnI CCWGG 1 cut(s) 361
AjuI GAANNNNNNNTTGG 2 cut(s) 693, 725
Alw21I GWGCWC 3 cut(s) 74, 592, 973
Alw26I GTCTC 2 cut(s) 561, 856
Alw44I GTGCAC 1 cut(s) 588
AlwI GGATC 2 cut(s) 778, 841
AlwNI CAGNNNCTG 1 cut(s) 419
Ama87I CYCGRG 1 cut(s) 583
AoxI GGCC 1 cut(s) 553
ApaLI GTGCAC 1 cut(s) 588
ApeKI GCWGC 5 cut(s) 55, 185, 341, 398, 728
ApoI RAATTY 1 cut(s) 721
Asp700I GAANNNNTTC 1 cut(s) 460
AspS9I GGNCC 1 cut(s) 428
AsuHPI GGTGA 2 cut(s) 454, 754
AvaI CYCGRG 1 cut(s) 583
AvaII GGWCC 1 cut(s) 428
BaeGI GKGCMC 1 cut(s) 592
BbsI GAAGAC 1 cut(s) 791
Bbv12I GWGCWC 3 cut(s) 74, 592, 973
BbvI GCAGC 5 cut(s) 42, 197, 328, 385, 740
BccI CCATC 1 cut(s) 907
BceAI ACGGC 1 cut(s) 377
BcgI CGANNNNNNTGC 4 cut(s) 242, 266, 276, 300
BciT130I CCWGG 1 cut(s) 363
BclI TGATCA 1 cut(s) 906
BcoDI GTCTC 2 cut(s) 561, 856
BfaI CTAG 5 cut(s) 194, 402, 485, 672, 734
BfmI CTRYAG 2 cut(s) 342, 823
BfuAI ACCTGC 1 cut(s) 880
BisI GCNGC 5 cut(s) 56, 186, 342, 399, 729
BlpI GCTNAGC 1 cut(s) 82
BlsI GCNGC 5 cut(s) 57, 187, 343, 400, 730
BmcAI AGTACT 1 cut(s) 676
Bme1390I CCNGG 1 cut(s) 363
Bme18I GGWCC 1 cut(s) 428
BmeT110I CYCGRG 1 cut(s) 583
BmgT120I GGNCC 1 cut(s) 428
BmrFI CCNGG 1 cut(s) 363
BmrI ACTGGG 1 cut(s) 498
BmsI GCATC 5 cut(s) 226, 248, 322, 397, 649
BmuI ACTGGG 1 cut(s) 498
BpiI GAAGAC 1 cut(s) 791
BplI GAGNNNNNCTC 2 cut(s) 848, 880
Bpu1102I GCTNAGC 1 cut(s) 82
BsaJI CCNNGG 2 cut(s) 336, 393
Bsc4I CCNNNNNNNGG 2 cut(s) 793, 935
Bse1I ACTGG 3 cut(s) 504, 648, 940
Bse3DI GCAATG 1 cut(s) 882
BseBI CCWGG 1 cut(s) 363
BseDI CCNNGG 2 cut(s) 336, 393
BseGI GGATG 1 cut(s) 412
BseLI CCNNNNNNNGG 2 cut(s) 793, 935
BseMI GCAATG 1 cut(s) 882
BseMII CTCAG 4 cut(s) 51, 96, 623, 867
BseNI ACTGG 3 cut(s) 504, 648, 940
BseRI GAGGAG 1 cut(s) 85
BseSI GKGCMC 1 cut(s) 592
BseXI GCAGC 5 cut(s) 42, 197, 328, 385, 740
BseYI CCCAGC 1 cut(s) 435
BsgI GTGCAG 1 cut(s) 399
Bsh1285I CGRYCG 1 cut(s) 900
BshFI GGCC 1 cut(s) 555
BsiEI CGRYCG 1 cut(s) 900
BsiHKAI GWGCWC 3 cut(s) 74, 592, 973
BsiHKCI CYCGRG 1 cut(s) 583
BslI CCNNNNNNNGG 2 cut(s) 793, 935
BsmAI GTCTC 2 cut(s) 561, 856
BsmI GAATGC 1 cut(s) 289
BsnI GGCC 1 cut(s) 555
BsoBI CYCGRG 1 cut(s) 583
Bsp1286I GDGCHC 3 cut(s) 74, 592, 973
Bsp143I GATC 4 cut(s) 783, 811, 833, 906
Bsp1720I GCTNAGC 1 cut(s) 82
BspACI CCGC 3 cut(s) 199, 440, 900
BspANI GGCC 1 cut(s) 555
BspCNI CTCAG 4 cut(s) 50, 95, 622, 866
BspMAI CTGCAG 1 cut(s) 346
BspMI ACCTGC 1 cut(s) 880
BspPI GGATC 2 cut(s) 778, 841
BsrDI GCAATG 1 cut(s) 882
BsrI ACTGG 3 cut(s) 504, 648, 940
BssECI CCNNGG 2 cut(s) 336, 393
BssMI GATC 4 cut(s) 783, 811, 833, 906
BssT1I CCWWGG 1 cut(s) 336
Bst2UI CCWGG 1 cut(s) 363
Bst6I CTCTTC 1 cut(s) 504
BstAPI GCANNNNNTGC 2 cut(s) 32, 668
BstC8I GCNNGC 3 cut(s) 60, 203, 475
BstDEI CTNAG 5 cut(s) 37, 82, 511, 609, 853
BstDSI CCRYGG 1 cut(s) 393
BstF5I GGATG 1 cut(s) 412
BstKTI GATC 4 cut(s) 786, 814, 836, 909
BstMAI GTCTC 2 cut(s) 561, 856
BstMBI GATC 4 cut(s) 783, 811, 833, 906
BstMCI CGRYCG 1 cut(s) 900
BstNI CCWGG 1 cut(s) 363
BstSCI CCNGG 1 cut(s) 361
BstSFI CTRYAG 2 cut(s) 342, 823
BstSLI GKGCMC 1 cut(s) 592
BstV1I GCAGC 5 cut(s) 42, 197, 328, 385, 740
BstV2I GAAGAC 1 cut(s) 791
BstX2I RGATCY 1 cut(s) 833
BstYI RGATCY 1 cut(s) 833
BsuRI GGCC 1 cut(s) 555
BtgI CCRYGG 1 cut(s) 393
BtsCI GGATG 1 cut(s) 412
BtsI GCAGTG 4 cut(s) 44, 168, 287, 351
BtsIMutI CAGTG 7 cut(s) 44, 168, 287, 351, 617, 655, 933
BveI ACCTGC 1 cut(s) 880
Cac8I GCNNGC 3 cut(s) 60, 203, 475
CaiI CAGNNNCTG 1 cut(s) 419
Cfr13I GGNCC 1 cut(s) 428
CseI GACGC 1 cut(s) 795
Csp6I GTAC 1 cut(s) 675
CviAII CATG 3 cut(s) 181, 212, 904
CviQI GTAC 1 cut(s) 675
DdeI CTNAG 5 cut(s) 37, 82, 511, 609, 853
DpnI GATC 4 cut(s) 785, 813, 835, 908
DpnII GATC 4 cut(s) 783, 811, 833, 906
DrdI GACNNNNNNGTC 1 cut(s) 848
DseDI GACNNNNNNGTC 1 cut(s) 848
Eam1104I CTCTTC 1 cut(s) 504
EarI CTCTTC 1 cut(s) 504
EciI GGCGGA 1 cut(s) 188
Eco130I CCWWGG 1 cut(s) 336
Eco147I AGGCCT 1 cut(s) 555
Eco32I GATATC 1 cut(s) 385
Eco47I GGWCC 1 cut(s) 428
Eco57I CTGAAG 1 cut(s) 396
Eco88I CYCGRG 1 cut(s) 583
EcoRII CCWGG 1 cut(s) 361
EcoRV GATATC 1 cut(s) 385
EcoT14I CCWWGG 1 cut(s) 336
EcoT22I ATGCAT 1 cut(s) 241
ErhI CCWWGG 1 cut(s) 336
FaeI CATG 3 cut(s) 184, 215, 907
FatI CATG 3 cut(s) 180, 211, 903
FbaI TGATCA 1 cut(s) 906
Fnu4HI GCNGC 5 cut(s) 56, 186, 342, 399, 729
FokI GGATG 1 cut(s) 419
Fsp4HI GCNGC 5 cut(s) 56, 186, 342, 399, 729
FspBI CTAG 5 cut(s) 194, 402, 485, 672, 734
GluI GCNGC 5 cut(s) 56, 186, 342, 399, 729
GsaI CCCAGC 1 cut(s) 439
HaeIII GGCC 1 cut(s) 555
HgaI GACGC 1 cut(s) 795
Hin1II CATG 3 cut(s) 184, 215, 907
HindIII AAGCTT 1 cut(s) 446
HinfI GANTC 3 cut(s) 461, 540, 633
HphI GGTGA 2 cut(s) 454, 754
Hpy166II GTNNAC 1 cut(s) 590
Hpy188I TCNGA 4 cut(s) 300, 566, 811, 856
Hpy188III TCNNGA 2 cut(s) 787, 910
Hpy8I GTNNAC 1 cut(s) 590
Hpy99I CGWCG 2 cut(s) 180, 257
HpyAV CCTTC 3 cut(s) 450, 787, 951
HpyCH4IV ACGT 1 cut(s) 175
HpyF3I CTNAG 5 cut(s) 37, 82, 511, 609, 853
HpySE526I ACGT 1 cut(s) 175
Hsp92II CATG 3 cut(s) 184, 215, 907
Ksp22I TGATCA 1 cut(s) 906
Kzo9I GATC 4 cut(s) 783, 811, 833, 906
Lsp1109I GCAGC 5 cut(s) 42, 197, 328, 385, 740
LweI GCATC 5 cut(s) 226, 248, 322, 397, 649
MaeI CTAG 5 cut(s) 194, 402, 485, 672, 734
MaeII ACGT 1 cut(s) 175
MaeIII GTNAC 3 cut(s) 626, 650, 742
MalI GATC 4 cut(s) 785, 813, 835, 908
MboI GATC 4 cut(s) 783, 811, 833, 906
MboII GAAGA 4 cut(s) 465, 491, 791, 802
MfeI CAATTG 1 cut(s) 597
MflI RGATCY 1 cut(s) 833
MhlI GDGCHC 3 cut(s) 74, 592, 973
MluCI AATT 2 cut(s) 597, 721
MmeI TCCRAC 1 cut(s) 403
MnlI CCTC 9 cut(s) 46, 106, 199, 305, 419, 530, 566, 824, 939
Mph1103I ATGCAT 1 cut(s) 241
MroXI GAANNNNTTC 1 cut(s) 460
MseI TTAA 1 cut(s) 924
MslI CAYNNNNRTG 1 cut(s) 210
MspR9I CCNGG 1 cut(s) 363
MunI CAATTG 1 cut(s) 597
Mva1269I GAATGC 1 cut(s) 289
MvaI CCWGG 1 cut(s) 363
NdeII GATC 4 cut(s) 783, 811, 833, 906
NlaIII CATG 3 cut(s) 184, 215, 907
NmuCI GTSAC 3 cut(s) 626, 650, 742
NsiI ATGCAT 1 cut(s) 241
PceI AGGCCT 1 cut(s) 555
PctI GAATGC 1 cut(s) 289
PdmI GAANNNNTTC 1 cut(s) 460
PfeI GAWTC 3 cut(s) 461, 540, 633
PkrI GCNGC 5 cut(s) 57, 187, 343, 400, 730
PsiI TTATAA 1 cut(s) 108
Psp6I CCWGG 1 cut(s) 361
PspFI CCCAGC 1 cut(s) 435
PspGI CCWGG 1 cut(s) 361
PspPI GGNCC 1 cut(s) 428
PstI CTGCAG 1 cut(s) 346
PstNI CAGNNNCTG 1 cut(s) 419
PsuI RGATCY 1 cut(s) 833
RsaI GTAC 1 cut(s) 676
RsaNI GTAC 1 cut(s) 675
RseI CAYNNNNRTG 1 cut(s) 210
SaqAI TTAA 1 cut(s) 924
SatI GCNGC 5 cut(s) 56, 186, 342, 399, 729
Sau3AI GATC 4 cut(s) 783, 811, 833, 906
Sau96I GGNCC 1 cut(s) 428
ScaI AGTACT 1 cut(s) 676
ScrFI CCNGG 1 cut(s) 363
SduI GDGCHC 3 cut(s) 74, 592, 973
SfaNI GCATC 5 cut(s) 226, 248, 322, 397, 649
SfcI CTRYAG 2 cut(s) 342, 823
SinI GGWCC 1 cut(s) 428
SmiMI CAYNNNNRTG 1 cut(s) 210
Sse9I AATT 2 cut(s) 597, 721
SseBI AGGCCT 1 cut(s) 555
SsiI CCGC 3 cut(s) 199, 440, 900
SspMI CTAG 5 cut(s) 194, 402, 485, 672, 734
StuI AGGCCT 1 cut(s) 555
StyD4I CCNGG 1 cut(s) 361
StyI CCWWGG 1 cut(s) 336
TaiI ACGT 1 cut(s) 178
TaqI TCGA 4 cut(s) 98, 252, 464, 522
TasI AATT 2 cut(s) 597, 721
TatI WGTACW 1 cut(s) 674
TfiI GAWTC 3 cut(s) 461, 540, 633
Tru1I TTAA 1 cut(s) 924
Tru9I TTAA 1 cut(s) 924
TscAI CASTG 7 cut(s) 51, 168, 294, 351, 617, 655, 940
TseFI GTSAC 3 cut(s) 626, 650, 742
TseI GCWGC 5 cut(s) 55, 185, 341, 398, 728
Tsp45I GTSAC 3 cut(s) 626, 650, 742
TspDTI ATGAA 3 cut(s) 20, 333, 871
TspGWI ACGGA 1 cut(s) 614
TspRI CASTG 7 cut(s) 51, 168, 294, 351, 617, 655, 940
VneI GTGCAC 1 cut(s) 588
VpaK11BI GGWCC 1 cut(s) 428
XapI RAATTY 1 cut(s) 721
XcmI CCANNNNNNNNNTGG 2 cut(s) 343, 910
XmnI GAANNNNTTC 1 cut(s) 460
XspI CTAG 5 cut(s) 194, 402, 485, 672, 734
ZrmI AGTACT 1 cut(s) 676
Zsp2I ATGCAT 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.