FvH4_4g13860

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0006076
Physical Location & Seq
Reverse (-)
17369926 .. 17371657
1732 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g13860.t1

Sequence Viewer

Length: 981 bp
ATGATGAAGTCTTTTAGCTCCAAGGCAAATGTTGCCTCAGTTGCACTGCTGTTGTTGCTTGCCCTGATGAGCACAACAAGCTCAGCTACGGTCTCCTCGACATTTTATAACAAAGCATGTCCAAACGCTCTCGCTACAATCAGAAAATCCGTAAGAACAGCAGTCTCAGCCGAACGTCGGATGGCTGCCTCCCTAGTCCGCCTTCATTTCCATGACTGCTTTGTTCAGGGTTGTGATGCATCAATCTTACTTGACGATACTGCTTCTATCACAGGCGAAAAGACCGCACGGCCTAATCTGAACTCTGTGAGAGGTTATGGAGTCATAGATAATGCCAAGGCTGCAGTGGAGAAACTATGTCCTGGTGTAGTTTCATGTGCAGATATCGTCGCCGTGGCTGCTAGGGATGCTTCAGTTGCTGTTGGAGGTCCAGACTGGGCAGTGAAGCTTGGAAGAAGGGATTCGACCACAGCAAGCAAAACTCTAGCTGAAAGCTCCCTCCCAAGTTTCTTAGACAGCCTCGAAAGCCTTACTAACAGATTAGCAGGTTTAGGCCTCAATGTCAGAGACTTGGTTGCGCTATCGGGTGCGCATTCAATTGGACAAGCTCAGTGCTTCACATTCCGTGACAGAATCTACAATGAAACCAGTGACATTGATGCCAACTTTGCACGTACTCGCGGACGTCGTTGTCCAGCAGCAGCTAATGATGGTAATGCAAATTTGGCACCACTTGATTTGGTGACACCCAATCAGCTGGACAACAACTACTTCAAGAACTTGATCCAGAAGAAGGGTCTTCTTGCATCCGATCAAGTTCTCTTTAGTGGAGGTTCCACAGACAGCGTTGTTTCAGAGTATAGCTCCAAACCTGCAAAGTTCAAGGCTGATTTTGCGACCGCCATGATCAAGATGGGAAACATTAATCCTCTCACTGGCTCAAATGGGCAGATAAGAAGGATTTGTAGTGCTCTCAACTGA

Protein Analysis

327

Amino Acids

34.48

Weight (kDa)

9.22

Isoelectric Point (pI)

29.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 47 - 289 3.2e-81 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 108
AasI GACNNNNNNGTC 1 cut(s) 690
AatII GACGTC 1 cut(s) 688
Acc16I TGCGCA 1 cut(s) 591
Acc36I ACCTGC 2 cut(s) 536, 880
AccB1I GGYRCC 1 cut(s) 727
AccII CGCG 1 cut(s) 681
AciI CCGC 4 cut(s) 199, 285, 681, 900
AclWI GGATC 1 cut(s) 778
AcsI RAATTY 1 cut(s) 721
AcuI CTGAAG 1 cut(s) 396
AcyI GRCGYC 1 cut(s) 685
AfaI GTAC 1 cut(s) 676
AfiI CCNNNNNNNGG 3 cut(s) 177, 793, 935
AgsI TTSAA 3 cut(s) 597, 775, 883
AjnI CCWGG 1 cut(s) 361
Alw21I GWGCWC 2 cut(s) 74, 973
Alw26I GTCTC 3 cut(s) 97, 169, 561
AlwI GGATC 1 cut(s) 778
AlwNI CAGNNNCTG 1 cut(s) 419
AoxI GGCC 2 cut(s) 290, 553
ApeKI GCWGC 5 cut(s) 185, 341, 398, 698, 701
ApoI RAATTY 1 cut(s) 721
AseI ATTAAT 1 cut(s) 924
Asp700I GAANNNNTTC 1 cut(s) 460
AspLEI GCGC 2 cut(s) 580, 592
AspS9I GGNCC 1 cut(s) 428
AsuHPI GGTGA 1 cut(s) 754
AvaII GGWCC 1 cut(s) 428
BanI GGYRCC 1 cut(s) 727
BbsI GAAGAC 1 cut(s) 791
Bbv12I GWGCWC 2 cut(s) 74, 973
BbvI GCAGC 5 cut(s) 172, 328, 385, 710, 713
BccI CCATC 3 cut(s) 175, 704, 907
BceAI ACGGC 2 cut(s) 305, 377
BciT130I CCWGG 1 cut(s) 363
BclI TGATCA 1 cut(s) 906
BcoDI GTCTC 3 cut(s) 97, 169, 561
BfaI CTAG 3 cut(s) 194, 402, 485
BfmI CTRYAG 1 cut(s) 342
BfuAI ACCTGC 2 cut(s) 536, 880
BisI GCNGC 5 cut(s) 186, 342, 399, 699, 702
BlpI GCTNAGC 1 cut(s) 82
BlsI GCNGC 5 cut(s) 187, 343, 400, 700, 703
Bme1390I CCNGG 1 cut(s) 363
Bme18I GGWCC 1 cut(s) 428
BmgT120I GGNCC 1 cut(s) 428
BmiI GGNNCC 2 cut(s) 729, 835
BmrFI CCNGG 1 cut(s) 363
BmrI ACTGGG 1 cut(s) 445
BmsI GCATC 5 cut(s) 226, 248, 397, 649, 815
BmuI ACTGGG 1 cut(s) 445
BpiI GAAGAC 1 cut(s) 791
BplI GAGNNNNNCTC 2 cut(s) 848, 880
Bpu1102I GCTNAGC 1 cut(s) 82
BsaAI YACGTR 1 cut(s) 674
BsaHI GRCGYC 1 cut(s) 685
BsaI GGTCTC 1 cut(s) 97
BsaJI CCNNGG 3 cut(s) 21, 336, 393
Bsc4I CCNNNNNNNGG 3 cut(s) 177, 793, 935
Bse1I ACTGG 3 cut(s) 440, 648, 940
BseBI CCWGG 1 cut(s) 363
BseDI CCNNGG 3 cut(s) 21, 336, 393
BseGI GGATG 3 cut(s) 186, 412, 806
BseLI CCNNNNNNNGG 3 cut(s) 177, 793, 935
BseMII CTCAG 4 cut(s) 51, 96, 180, 623
BseNI ACTGG 3 cut(s) 440, 648, 940
BseRI GAGGAG 1 cut(s) 85
BseXI GCAGC 5 cut(s) 172, 328, 385, 710, 713
BsgI GTGCAG 1 cut(s) 399
Bsh1236I CGCG 1 cut(s) 681
Bsh1285I CGRYCG 1 cut(s) 900
BshFI GGCC 2 cut(s) 292, 555
BshNI GGYRCC 1 cut(s) 727
BsiEI CGRYCG 1 cut(s) 900
BsiHKAI GWGCWC 2 cut(s) 74, 973
BslI CCNNNNNNNGG 3 cut(s) 177, 793, 935
BsmAI GTCTC 3 cut(s) 97, 169, 561
BsmI GAATGC 1 cut(s) 592
BsnI GGCC 2 cut(s) 292, 555
Bso31I GGTCTC 1 cut(s) 97
Bsp1286I GDGCHC 2 cut(s) 74, 973
Bsp143I GATC 3 cut(s) 783, 811, 906
Bsp1720I GCTNAGC 1 cut(s) 82
BspACI CCGC 4 cut(s) 199, 285, 681, 900
BspANI GGCC 2 cut(s) 292, 555
BspCNI CTCAG 4 cut(s) 50, 95, 179, 622
BspFNI CGCG 1 cut(s) 681
BspLI GGNNCC 2 cut(s) 729, 835
BspMAI CTGCAG 1 cut(s) 346
BspMI ACCTGC 2 cut(s) 536, 880
BspPI GGATC 1 cut(s) 778
BspT107I GGYRCC 1 cut(s) 727
BspTNI GGTCTC 1 cut(s) 97
BsrI ACTGG 3 cut(s) 440, 648, 940
BssECI CCNNGG 3 cut(s) 21, 336, 393
BssMI GATC 3 cut(s) 783, 811, 906
BssNI GRCGYC 1 cut(s) 685
BssT1I CCWWGG 2 cut(s) 21, 336
Bst2UI CCWGG 1 cut(s) 363
Bst4CI ACNGT 1 cut(s) 91
BstACI GRCGYC 1 cut(s) 685
BstAPI GCANNNNNTGC 1 cut(s) 32
BstBAI YACGTR 1 cut(s) 674
BstC8I GCNNGC 2 cut(s) 60, 475
BstDEI CTNAG 5 cut(s) 37, 82, 166, 511, 609
BstDSI CCRYGG 1 cut(s) 393
BstF5I GGATG 3 cut(s) 186, 412, 806
BstFNI CGCG 1 cut(s) 681
BstHHI GCGC 2 cut(s) 580, 592
BstKTI GATC 3 cut(s) 786, 814, 909
BstMAI GTCTC 3 cut(s) 97, 169, 561
BstMBI GATC 3 cut(s) 783, 811, 906
BstMCI CGRYCG 1 cut(s) 900
BstNI CCWGG 1 cut(s) 363
BstNSI RCATGY 1 cut(s) 120
BstSCI CCNGG 1 cut(s) 361
BstSFI CTRYAG 1 cut(s) 342
BstUI CGCG 1 cut(s) 681
BstV1I GCAGC 5 cut(s) 172, 328, 385, 710, 713
BstV2I GAAGAC 1 cut(s) 791
BstXI CCANNNNNNTGG 1 cut(s) 757
BsuRI GGCC 2 cut(s) 292, 555
BtgI CCRYGG 1 cut(s) 393
BtsCI GGATG 3 cut(s) 186, 412, 806
BtsI GCAGTG 3 cut(s) 44, 351, 447
BtsIMutI CAGTG 6 cut(s) 44, 351, 447, 617, 655, 933
BveI ACCTGC 2 cut(s) 536, 880
Cac8I GCNNGC 2 cut(s) 60, 475
CaiI CAGNNNCTG 1 cut(s) 419
CfoI GCGC 2 cut(s) 580, 592
Cfr13I GGNCC 1 cut(s) 428
Csp6I GTAC 1 cut(s) 675
CspCI CAANNNNNGTGG 2 cut(s) 720, 755
CviAII CATG 4 cut(s) 117, 212, 375, 904
CviQI GTAC 1 cut(s) 675
DdeI CTNAG 5 cut(s) 37, 82, 166, 511, 609
DpnI GATC 3 cut(s) 785, 813, 908
DpnII GATC 3 cut(s) 783, 811, 906
DrdI GACNNNNNNGTC 1 cut(s) 690
DseDI GACNNNNNNGTC 1 cut(s) 690
EciI GGCGGA 1 cut(s) 188
Eco130I CCWWGG 2 cut(s) 21, 336
Eco147I AGGCCT 1 cut(s) 555
Eco31I GGTCTC 1 cut(s) 97
Eco32I GATATC 1 cut(s) 385
Eco47I GGWCC 1 cut(s) 428
Eco57I CTGAAG 1 cut(s) 396
EcoRII CCWGG 1 cut(s) 361
EcoRV GATATC 1 cut(s) 385
EcoT14I CCWWGG 2 cut(s) 21, 336
EcoT22I ATGCAT 1 cut(s) 241
ErhI CCWWGG 2 cut(s) 21, 336
FaeI CATG 4 cut(s) 120, 215, 378, 907
FaiI YATR 9 cut(s) 108, 118, 213, 318, 326, 358, 376, 861, 905
FatI CATG 4 cut(s) 116, 211, 374, 903
FbaI TGATCA 1 cut(s) 906
Fnu4HI GCNGC 5 cut(s) 186, 342, 399, 699, 702
FokI GGATG 3 cut(s) 193, 419, 793
Fsp4HI GCNGC 5 cut(s) 186, 342, 399, 699, 702
FspAI RTGCGCAY 1 cut(s) 591
FspBI CTAG 3 cut(s) 194, 402, 485
FspI TGCGCA 1 cut(s) 591
GlaI GCGC 2 cut(s) 579, 591
GluI GCNGC 5 cut(s) 186, 342, 399, 699, 702
HaeIII GGCC 2 cut(s) 292, 555
HhaI GCGC 2 cut(s) 580, 592
Hin1I GRCGYC 1 cut(s) 685
Hin1II CATG 4 cut(s) 120, 215, 378, 907
Hin6I GCGC 2 cut(s) 578, 590
HinP1I GCGC 2 cut(s) 578, 590
HindIII AAGCTT 1 cut(s) 446
HinfI GANTC 3 cut(s) 321, 461, 633
HphI GGTGA 1 cut(s) 754
Hpy188I TCNGA 6 cut(s) 143, 180, 300, 566, 811, 856
Hpy188III TCNNGA 4 cut(s) 431, 775, 787, 910
Hpy99I CGWCG 3 cut(s) 180, 392, 690
HpyAV CCTTC 4 cut(s) 212, 450, 787, 951
HpyCH4III ACNGT 1 cut(s) 91
HpyCH4IV ACGT 3 cut(s) 175, 673, 685
HpyCH4V TGCA 8 cut(s) 44, 239, 344, 380, 671, 719, 806, 875
HpyF3I CTNAG 5 cut(s) 37, 82, 166, 511, 609
HpySE526I ACGT 3 cut(s) 175, 673, 685
Hsp92I GRCGYC 1 cut(s) 685
Hsp92II CATG 4 cut(s) 120, 215, 378, 907
HspAI GCGC 2 cut(s) 578, 590
Ksp22I TGATCA 1 cut(s) 906
Kzo9I GATC 3 cut(s) 783, 811, 906
LmnI GCTCC 3 cut(s) 23, 500, 869
Lsp1109I GCAGC 5 cut(s) 172, 328, 385, 710, 713
LweI GCATC 5 cut(s) 226, 248, 397, 649, 815
MaeI CTAG 3 cut(s) 194, 402, 485
MaeII ACGT 3 cut(s) 175, 673, 685
MaeIII GTNAC 3 cut(s) 626, 650, 742
MalI GATC 3 cut(s) 785, 813, 908
MboI GATC 3 cut(s) 783, 811, 906
MboII GAAGA 3 cut(s) 465, 791, 802
MfeI CAATTG 1 cut(s) 597
MhlI GDGCHC 2 cut(s) 74, 973
MluCI AATT 2 cut(s) 597, 721
MlyI GAGTC 1 cut(s) 330
MmeI TCCRAC 2 cut(s) 158, 403
Mph1103I ATGCAT 1 cut(s) 241
MroXI GAANNNNTTC 1 cut(s) 460
MseI TTAA 1 cut(s) 924
MslI CAYNNNNRTG 1 cut(s) 210
MspA1I CMGCKG 1 cut(s) 757
MspR9I CCNGG 1 cut(s) 363
MunI CAATTG 1 cut(s) 597
Mva1269I GAATGC 1 cut(s) 592
MvaI CCWGG 1 cut(s) 363
MvnI CGCG 1 cut(s) 681
NdeII GATC 3 cut(s) 783, 811, 906
NlaIII CATG 4 cut(s) 120, 215, 378, 907
NlaIV GGNNCC 2 cut(s) 729, 835
NmuCI GTSAC 3 cut(s) 626, 650, 742
NsbI TGCGCA 1 cut(s) 591
NsiI ATGCAT 1 cut(s) 241
NspI RCATGY 1 cut(s) 120
PceI AGGCCT 1 cut(s) 555
PcsI WCGNNNNNNNCGW 2 cut(s) 95, 685
PctI GAATGC 1 cut(s) 592
PdmI GAANNNNTTC 1 cut(s) 460
PfeI GAWTC 2 cut(s) 461, 633
PkrI GCNGC 5 cut(s) 187, 343, 400, 700, 703
PleI GAGTC 1 cut(s) 329
PpsI GAGTC 1 cut(s) 329
Ppu21I YACGTR 1 cut(s) 674
PshBI ATTAAT 1 cut(s) 924
PsiI TTATAA 1 cut(s) 108
Psp6I CCWGG 1 cut(s) 361
PspGI CCWGG 1 cut(s) 361
PspN4I GGNNCC 2 cut(s) 729, 835
PspPI GGNCC 1 cut(s) 428
PstI CTGCAG 1 cut(s) 346
PstNI CAGNNNCTG 1 cut(s) 419
PvuII CAGCTG 1 cut(s) 757
RsaI GTAC 1 cut(s) 676
RsaNI GTAC 1 cut(s) 675
RseI CAYNNNNRTG 1 cut(s) 210
SaqAI TTAA 1 cut(s) 924
SatI GCNGC 5 cut(s) 186, 342, 399, 699, 702
Sau3AI GATC 3 cut(s) 783, 811, 906
Sau96I GGNCC 1 cut(s) 428
SchI GAGTC 1 cut(s) 330
ScrFI CCNGG 1 cut(s) 363
SduI GDGCHC 2 cut(s) 74, 973
SfaNI GCATC 5 cut(s) 226, 248, 397, 649, 815
SfcI CTRYAG 1 cut(s) 342
SinI GGWCC 1 cut(s) 428
SmiMI CAYNNNNRTG 1 cut(s) 210
Sse9I AATT 2 cut(s) 597, 721
SseBI AGGCCT 1 cut(s) 555
SsiI CCGC 4 cut(s) 199, 285, 681, 900
SspMI CTAG 3 cut(s) 194, 402, 485
StuI AGGCCT 1 cut(s) 555
StyD4I CCNGG 1 cut(s) 361
StyI CCWWGG 2 cut(s) 21, 336
TaaI ACNGT 1 cut(s) 91
TaiI ACGT 3 cut(s) 178, 676, 688
TaqI TCGA 3 cut(s) 98, 464, 522
TasI AATT 2 cut(s) 597, 721
TfiI GAWTC 2 cut(s) 461, 633
Tru1I TTAA 1 cut(s) 924
Tru9I TTAA 1 cut(s) 924
TscAI CASTG 6 cut(s) 51, 351, 447, 617, 655, 940
TseFI GTSAC 3 cut(s) 626, 650, 742
TseI GCWGC 5 cut(s) 185, 341, 398, 698, 701
Tsp45I GTSAC 3 cut(s) 626, 650, 742
TspDTI ATGAA 4 cut(s) 20, 194, 363, 657
TspGWI ACGGA 2 cut(s) 139, 614
TspRI CASTG 6 cut(s) 51, 351, 447, 617, 655, 940
VpaK11BI GGWCC 1 cut(s) 428
VspI ATTAAT 1 cut(s) 924
XapI RAATTY 1 cut(s) 721
XceI RCATGY 1 cut(s) 120
XcmI CCANNNNNNNNNTGG 2 cut(s) 343, 910
XmnI GAANNNNTTC 1 cut(s) 460
XspI CTAG 3 cut(s) 194, 402, 485
ZraI GACGTC 1 cut(s) 686
Zsp2I ATGCAT 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.