Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0006076

Physical Location & Seq

Genomic Coordinates Forward (+)

33213011 .. 33214170

Gene Structure 1160 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g36130.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGATGAAGTCTTTTAGTTCAAATGTAAATGTTGCCTCTATTGCACTGCTGCTGTTGCTTGCCCTGATGAGCACAACAAGCTCAGCTCAGCTCTCCTCCTCAACATTTTATGACAACGCATGTCCAAACGCTCTCGCTACGATCAGAAAATCCATACGATCAGCAGTCTCAGCTGAACGTCGGATGGCAGCCTCCCTAATCCGCCTGCATTTCCATGACTGCTTTGTTCAGGGTTGTGATGCGTCAATCTTACTTGACGATACTTCTTCCATCACAGGCGAAAAGACCGCACCGCCTAATCTGAACTCTGTGAGAGGATATGGAGTCATAGATAATGCCAAATCTGAAGTGGAGAAACTATGTCCTGGTGTAGTTTCTTGTGCAGATATCGTCGCTGTGGCTGCTAGGGATGCTTCAGTTGCTGTTGGAGGTCCAGACTGGTCGGTGAAGCTTGGAAGAAGGGATTCGACCACAGCAAGCAAAAGCCTAGCTGGAAGCTCGCTTCCCAGTTTCTTAGACAGCCTTGAAAGCCTTACTAACAGGTTTGCTGGTTTAGGCCTCAATGCCAGAGACTTGGTTGCGCTCTCAGGTGCACATTCCATCGGACAAGCTCAGTGCTTCACATTCCGCGGAAGAATCTACAGCAACACCAGTGACATTGATGCTAACTTTGCTCGTACTCGCGGACGTACTTGTCCCGCAGCAGCTAATGATGGTGATGCAAATTTGGCAGCACTTGATTTGGTGACACCAAATCAACTGGACAACAACTACTTCAAGAACTTGATCCAGAAGAAGGGTCTTCTTGCATCCGATCAAGTTCTCTTTAGTGGAGGATCCACAGACAGCATTGTCTCGGAGTATAGCTCCAAACCTGCAAACTTCAAGGCTGATTTTGCGGCTGCCATGATCAAGATGGGAGACATTAACCCTCTCACTGGCTCAAATGGGCAGATAAGAAGGATTTGTAGTGCTCTCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0006950 GO:0008150 GO:0009628 GO:0009987 GO:0033554 GO:0036293 GO:0036294 GO:0042221 GO:0050896 GO:0051716 GO:0070482 GO:0070887 GO:0071453 GO:0071456

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

328

Amino Acids

34.39

Weight (kDa)

8.4

Isoelectric Point (pI)

28.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	48 - 290	1.6e-82	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006076)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14540 AT1G14550
fragaria_vesca	FvH4_2g30540 FvH4_4g13860 FvH4_4g36130
malus_domestica	MD13G1011000.v1.1 MD13G1011200.v1.1
prunus_persica	Prupe.1G341900_v2.0.a1
pyrus_communis	pycom13g00920
rosa_chinensis	RchiOBHm_Chr4g0445821 RchiOBHm_Chr4g0445871
rosa_laevigata	RLG00000005706 RLG00000005707
rosa_multiflora	Rmu_co8195238.1_g000001 Rmu_sc0000961.1_g000005 Rmu_sc0000961.1_g000010
rosa_roxburghii	Rroxscaffold_5G00386290 Rroxscaffold_5G00386310
rosa_rugosa	Rorug04G0365400
rosa_samantha	Rh4AG426900 Rh4AG427100 Rh4BG437300 Rh4CG454100 Rh4DG435200 Rh4DG435400
rosa_wichuraiana	Rw4G036540 Rw4G036570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	693, 851
Acc36I	ACCTGC	1 cut(s)	883
AccII	CGCG	2 cut(s)	630, 684
AciI	CCGC	8 cut(s)	202, 288, 293, 628, 630, 684, 699, 899
AclWI	GGATC	3 cut(s)	781, 831, 844
AcsI	RAATTY	1 cut(s)	724
AcuI	CTGAAG	2 cut(s)	366, 399
AfaI	GTAC	2 cut(s)	679, 691
AfiI	CCNNNNNNNGG	2 cut(s)	796, 938
AgsI	TTSAA	4 cut(s)	21, 527, 778, 886
AjnI	CCWGG	1 cut(s)	364
Alw21I	GWGCWC	3 cut(s)	74, 595, 976
Alw26I	GTCTC	4 cut(s)	172, 564, 859, 915
Alw44I	GTGCAC	1 cut(s)	591
AlwI	GGATC	3 cut(s)	781, 831, 844
AlwNI	CAGNNNCTG	1 cut(s)	422
AoxI	GGCC	1 cut(s)	556
ApaLI	GTGCAC	1 cut(s)	591
ApeKI	GCWGC	7 cut(s)	49, 188, 401, 701, 704, 731, 902
ApoI	RAATTY	1 cut(s)	724
Asp700I	GAANNNNTTC	1 cut(s)	463
AspLEI	GCGC	1 cut(s)	583
AspS9I	GGNCC	1 cut(s)	431
AsuHPI	GGTGA	3 cut(s)	457, 728, 757
AvaII	GGWCC	1 cut(s)	431
BaeGI	GKGCMC	1 cut(s)	595
BamHI	GGATCC	1 cut(s)	836
BbsI	GAAGAC	1 cut(s)	794
Bbv12I	GWGCWC	3 cut(s)	74, 595, 976
BbvI	GCAGC	7 cut(s)	36, 200, 388, 713, 716, 743, 889
BccI	CCATC	5 cut(s)	178, 278, 608, 707, 910
BciT130I	CCWGG	1 cut(s)	366
BclI	TGATCA	1 cut(s)	909
BcoDI	GTCTC	4 cut(s)	172, 564, 859, 915
BfaI	CTAG	2 cut(s)	405, 488
BfmI	CTRYAG	1 cut(s)	640
BfuAI	ACCTGC	1 cut(s)	883
BisI	GCNGC	8 cut(s)	50, 189, 402, 702, 705, 732, 900, 903
BlpI	GCTNAGC	2 cut(s)	82, 87
BlsI	GCNGC	8 cut(s)	51, 190, 403, 703, 706, 733, 901, 904
Bme1390I	CCNGG	1 cut(s)	366
Bme18I	GGWCC	1 cut(s)	431
BmgT120I	GGNCC	1 cut(s)	431
BmiI	GGNNCC	1 cut(s)	838
BmrFI	CCNGG	1 cut(s)	366
BmrI	ACTGGG	1 cut(s)	501
BmsI	GCATC	5 cut(s)	229, 400, 652, 709, 818
BmuI	ACTGGG	1 cut(s)	501
BpiI	GAAGAC	1 cut(s)	794
BplI	GAGNNNNNCTC	2 cut(s)	851, 883
Bpu1102I	GCTNAGC	2 cut(s)	82, 87
BsaJI	CCNNGG	1 cut(s)	628
Bsc4I	CCNNNNNNNGG	2 cut(s)	796, 938
Bse1I	ACTGG	5 cut(s)	443, 507, 651, 765, 943
BseBI	CCWGG	1 cut(s)	366
BseDI	CCNNGG	1 cut(s)	628
BseGI	GGATG	3 cut(s)	189, 415, 809
BseLI	CCNNNNNNNGG	2 cut(s)	796, 938
BseMII	CTCAG	5 cut(s)	96, 101, 183, 600, 626
BseNI	ACTGG	5 cut(s)	443, 507, 651, 765, 943
BseRI	GAGGAG	2 cut(s)	85, 88
BseSI	GKGCMC	1 cut(s)	595
BseXI	GCAGC	7 cut(s)	36, 200, 388, 713, 716, 743, 889
BsgI	GTGCAG	1 cut(s)	402
Bsh1236I	CGCG	2 cut(s)	630, 684
BshFI	GGCC	1 cut(s)	558
BsiHKAI	GWGCWC	3 cut(s)	74, 595, 976
BslFI	GGGAC	1 cut(s)	681
BslI	CCNNNNNNNGG	2 cut(s)	796, 938
BsmAI	GTCTC	4 cut(s)	172, 564, 859, 915
BsmFI	GGGAC	1 cut(s)	681
BsnI	GGCC	1 cut(s)	558
Bsp1286I	GDGCHC	3 cut(s)	74, 595, 976
Bsp143I	GATC	6 cut(s)	141, 158, 786, 814, 836, 909
Bsp1720I	GCTNAGC	2 cut(s)	82, 87
BspACI	CCGC	8 cut(s)	202, 288, 293, 628, 630, 684, 699, 899
BspANI	GGCC	1 cut(s)	558
BspCNI	CTCAG	5 cut(s)	95, 100, 182, 599, 625
BspFNI	CGCG	2 cut(s)	630, 684
BspLI	GGNNCC	1 cut(s)	838
BspMI	ACCTGC	1 cut(s)	883
BspPI	GGATC	3 cut(s)	781, 831, 844
BsrI	ACTGG	5 cut(s)	443, 507, 651, 765, 943
BssECI	CCNNGG	1 cut(s)	628
BssMI	GATC	6 cut(s)	141, 158, 786, 814, 836, 909
Bst2UI	CCWGG	1 cut(s)	366
BstC8I	GCNNGC	4 cut(s)	60, 206, 478, 500
BstDEI	CTNAG	6 cut(s)	82, 87, 169, 514, 586, 612
BstDSI	CCRYGG	1 cut(s)	628
BstF5I	GGATG	3 cut(s)	189, 415, 809
BstFNI	CGCG	2 cut(s)	630, 684
BstHHI	GCGC	1 cut(s)	583
BstKTI	GATC	6 cut(s)	144, 161, 789, 817, 839, 912
BstMAI	GTCTC	4 cut(s)	172, 564, 859, 915
BstMBI	GATC	6 cut(s)	141, 158, 786, 814, 836, 909
BstNI	CCWGG	1 cut(s)	366
BstNSI	RCATGY	1 cut(s)	123
BstSCI	CCNGG	1 cut(s)	364
BstSFI	CTRYAG	1 cut(s)	640
BstSLI	GKGCMC	1 cut(s)	595
BstUI	CGCG	2 cut(s)	630, 684
BstV1I	GCAGC	7 cut(s)	36, 200, 388, 713, 716, 743, 889
BstV2I	GAAGAC	1 cut(s)	794
BstX2I	RGATCY	1 cut(s)	836
BstXI	CCANNNNNNTGG	1 cut(s)	574
BstYI	RGATCY	1 cut(s)	836
BsuRI	GGCC	1 cut(s)	558
BtgI	CCRYGG	1 cut(s)	628
BtsCI	GGATG	3 cut(s)	189, 415, 809
BtsI	GCAGTG	1 cut(s)	44
BtsIMutI	CAGTG	4 cut(s)	44, 620, 658, 936
BveI	ACCTGC	1 cut(s)	883
Cac8I	GCNNGC	4 cut(s)	60, 206, 478, 500
CaiI	CAGNNNCTG	1 cut(s)	422
CfoI	GCGC	1 cut(s)	583
Cfr13I	GGNCC	1 cut(s)	431
Cfr42I	CCGCGG	1 cut(s)	631
CseI	GACGC	1 cut(s)	231
Csp6I	GTAC	2 cut(s)	678, 690
CviAII	CATG	3 cut(s)	120, 215, 907
CviQI	GTAC	2 cut(s)	678, 690
DdeI	CTNAG	6 cut(s)	82, 87, 169, 514, 586, 612
DpnI	GATC	6 cut(s)	143, 160, 788, 816, 838, 911
DpnII	GATC	6 cut(s)	141, 158, 786, 814, 836, 909
DrdI	GACNNNNNNGTC	2 cut(s)	693, 851
DseDI	GACNNNNNNGTC	2 cut(s)	693, 851
EciI	GGCGGA	1 cut(s)	191
Eco147I	AGGCCT	1 cut(s)	558
Eco32I	GATATC	1 cut(s)	388
Eco47I	GGWCC	1 cut(s)	431
Eco57I	CTGAAG	2 cut(s)	366, 399
EcoRII	CCWGG	1 cut(s)	364
EcoRV	GATATC	1 cut(s)	388
FaeI	CATG	3 cut(s)	123, 218, 910
FaiI	YATR	9 cut(s)	111, 121, 155, 216, 321, 329, 361, 864, 908
FaqI	GGGAC	1 cut(s)	681
FatI	CATG	3 cut(s)	119, 214, 906
FauI	CCCGC	1 cut(s)	706
FbaI	TGATCA	1 cut(s)	909
Fnu4HI	GCNGC	8 cut(s)	50, 189, 402, 702, 705, 732, 900, 903
FokI	GGATG	3 cut(s)	196, 422, 796
Fsp4HI	GCNGC	8 cut(s)	50, 189, 402, 702, 705, 732, 900, 903
FspBI	CTAG	2 cut(s)	405, 488
GlaI	GCGC	1 cut(s)	582
GluI	GCNGC	8 cut(s)	50, 189, 402, 702, 705, 732, 900, 903
HaeIII	GGCC	1 cut(s)	558
HgaI	GACGC	1 cut(s)	231
HhaI	GCGC	1 cut(s)	583
Hin1II	CATG	3 cut(s)	123, 218, 910
Hin6I	GCGC	1 cut(s)	581
HinP1I	GCGC	1 cut(s)	581
HindIII	AAGCTT	1 cut(s)	449
HinfI	GANTC	3 cut(s)	324, 464, 636
HphI	GGTGA	3 cut(s)	457, 728, 757
Hpy166II	GTNNAC	1 cut(s)	593
Hpy188I	TCNGA	7 cut(s)	146, 183, 303, 346, 605, 814, 859
Hpy188III	TCNNGA	4 cut(s)	434, 778, 790, 913
Hpy8I	GTNNAC	1 cut(s)	593
Hpy99I	CGWCG	2 cut(s)	183, 395
HpyAV	CCTTC	3 cut(s)	453, 790, 954
HpyCH4IV	ACGT	2 cut(s)	178, 688
HpyCH4V	TGCA	7 cut(s)	44, 208, 383, 593, 722, 809, 878
HpyF3I	CTNAG	6 cut(s)	82, 87, 169, 514, 586, 612
HpySE526I	ACGT	2 cut(s)	178, 688
Hsp92II	CATG	3 cut(s)	123, 218, 910
HspAI	GCGC	1 cut(s)	581
Ksp22I	TGATCA	1 cut(s)	909
KspI	CCGCGG	1 cut(s)	631
Kzo9I	GATC	6 cut(s)	141, 158, 786, 814, 836, 909
LmnI	GCTCC	1 cut(s)	872
Lsp1109I	GCAGC	7 cut(s)	36, 200, 388, 713, 716, 743, 889
LweI	GCATC	5 cut(s)	229, 400, 652, 709, 818
MaeI	CTAG	2 cut(s)	405, 488
MaeII	ACGT	2 cut(s)	178, 688
MaeIII	GTNAC	2 cut(s)	653, 745
MalI	GATC	6 cut(s)	143, 160, 788, 816, 838, 911
MboI	GATC	6 cut(s)	141, 158, 786, 814, 836, 909
MboII	GAAGA	5 cut(s)	258, 468, 645, 794, 805
MflI	RGATCY	1 cut(s)	836
MhlI	GDGCHC	3 cut(s)	74, 595, 976
MluCI	AATT	1 cut(s)	724
MlyI	GAGTC	1 cut(s)	333
MmeI	TCCRAC	2 cut(s)	161, 406
MnlI	CCTC	9 cut(s)	46, 106, 109, 202, 308, 422, 569, 827, 942
MroXI	GAANNNNTTC	1 cut(s)	463
MseI	TTAA	1 cut(s)	927
MslI	CAYNNNNRTG	1 cut(s)	213
MspA1I	CMGCKG	2 cut(s)	173, 630
MspR9I	CCNGG	1 cut(s)	366
MvaI	CCWGG	1 cut(s)	366
MvnI	CGCG	2 cut(s)	630, 684
NdeII	GATC	6 cut(s)	141, 158, 786, 814, 836, 909
NlaIII	CATG	3 cut(s)	123, 218, 910
NlaIV	GGNNCC	1 cut(s)	838
NmuCI	GTSAC	2 cut(s)	653, 745
NspI	RCATGY	1 cut(s)	123
PceI	AGGCCT	1 cut(s)	558
PdmI	GAANNNNTTC	1 cut(s)	463
PfeI	GAWTC	2 cut(s)	464, 636
PkrI	GCNGC	8 cut(s)	51, 190, 403, 703, 706, 733, 901, 904
PleI	GAGTC	1 cut(s)	332
PpsI	GAGTC	1 cut(s)	332
Psp6I	CCWGG	1 cut(s)	364
PspGI	CCWGG	1 cut(s)	364
PspN4I	GGNNCC	1 cut(s)	838
PspPI	GGNCC	1 cut(s)	431
PstNI	CAGNNNCTG	1 cut(s)	422
PsuI	RGATCY	1 cut(s)	836
PvuII	CAGCTG	1 cut(s)	173
RsaI	GTAC	2 cut(s)	679, 691
RsaNI	GTAC	2 cut(s)	678, 690
RseI	CAYNNNNRTG	1 cut(s)	213
SacII	CCGCGG	1 cut(s)	631
SaqAI	TTAA	1 cut(s)	927
SatI	GCNGC	8 cut(s)	50, 189, 402, 702, 705, 732, 900, 903
Sau3AI	GATC	6 cut(s)	141, 158, 786, 814, 836, 909
Sau96I	GGNCC	1 cut(s)	431
SchI	GAGTC	1 cut(s)	333
ScrFI	CCNGG	1 cut(s)	366
SduI	GDGCHC	3 cut(s)	74, 595, 976
SfaNI	GCATC	5 cut(s)	229, 400, 652, 709, 818
SfcI	CTRYAG	1 cut(s)	640
Sfr303I	CCGCGG	1 cut(s)	631
SgrBI	CCGCGG	1 cut(s)	631
SinI	GGWCC	1 cut(s)	431
SmiMI	CAYNNNNRTG	1 cut(s)	213
Sse9I	AATT	1 cut(s)	724
SseBI	AGGCCT	1 cut(s)	558
SsiI	CCGC	8 cut(s)	202, 288, 293, 628, 630, 684, 699, 899
SspMI	CTAG	2 cut(s)	405, 488
StuI	AGGCCT	1 cut(s)	558
StyD4I	CCNGG	1 cut(s)	364
TaiI	ACGT	2 cut(s)	181, 691
TaqI	TCGA	1 cut(s)	467
TasI	AATT	1 cut(s)	724
TauI	GCSGC	1 cut(s)	902
TfiI	GAWTC	2 cut(s)	464, 636
Tru1I	TTAA	1 cut(s)	927
Tru9I	TTAA	1 cut(s)	927
TscAI	CASTG	4 cut(s)	51, 620, 658, 943
TseFI	GTSAC	2 cut(s)	653, 745
TseI	GCWGC	7 cut(s)	49, 188, 401, 701, 704, 731, 902
Tsp45I	GTSAC	2 cut(s)	653, 745
TspDTI	ATGAA	1 cut(s)	20
TspRI	CASTG	4 cut(s)	51, 620, 658, 943
VneI	GTGCAC	1 cut(s)	591
VpaK11BI	GGWCC	1 cut(s)	431
XapI	RAATTY	1 cut(s)	724
XceI	RCATGY	1 cut(s)	123
XcmI	CCANNNNNNNNNTGG	2 cut(s)	346, 913
XmnI	GAANNNNTTC	1 cut(s)	463
XspI	CTAG	2 cut(s)	405, 488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.