Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0006076

Physical Location & Seq

Genomic Coordinates Reverse (-)

677492 .. 678650

Gene Structure 1159 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1011200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGAGGATGTCTTTCCCTTTCTTTTCCGGCCATGGAAATGTCGCTGCTGTTGCACTCGTGATGTTGGTTTTCATGAGCACAACAAGCGAAGCGCAATTATCTTCTACATTTTATGACAAAACCTGTCCAAACGCTCTTACCACTATAAAAAATGCCATAAGAACAGCTGTTTCCAGTGAAAGGCGGATGGCCGCGTCCCTAATCCGCCTCCATTTCCATGATTGTTTTGTCCAGGGTTGTGATGCATCAATCTTACTAGATGACGCTCCTTCTATCACAAGTGAAAAGGGCGCATTTCAAAACAACGGTTCTGTGAGAGGCTTTGAAGTCATAGATAAAGCAAAAGCTGAAGTGGAGAAGGTCTGCCCTGGTGTCGTATCTTGCGCAGATATTCTCGCTGTAGCCGCTCGGGATGCATCCGTTGCCGTGAGCGGTCCATCTTGGACGGTGAAACTGGGAAGAAGAGATTCCACCACAGCAAGCCAAATCCTAGCTGAAAGTTCACTTCCACTTTTCACAGACAGCCTTGACCGCCTTAGAGAGCGATTTGGCGACTTAGGCCTCAACGCGAGAGATTTGGTTGCACTGTCAGGTGCACACACAATTGGACAGGCTCGCTGCGTTACATTCCGTGGCAGAATTTACAACAATGCAAGTGACATCGATTCTAACTTTGCCACTACTCGCAAACGTCGTTGTCCAGCTGACGCAAACAATGGTGATGCAAATTTGGCACCGCTCGAGTTGGTGACACCGAACTCATTTGACAACAATTACTACAAGAATTTGATTCAGAAGAAGGGTCTTCTTGAATCGGATCAAGTTCTTTTTAGTGGAGGTTCCACAGACAGCATCGTCTCCGAGTACAGTTCCAAGCCCGCAACTTTTAAGGCTGATTTTATCACCGCTATGATTAAAATGGGAGACATTAATCCTCTCACCGGTTCAGCTGGAGAGGTCAGAAGGATTTGCAGTGCTCTCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0006950 GO:0008150 GO:0009628 GO:0009987 GO:0033554 GO:0036293 GO:0036294 GO:0042221 GO:0050896 GO:0051716 GO:0070482 GO:0070887 GO:0071453 GO:0071456

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

329

Amino Acids

35.26

Weight (kDa)

7.55

Isoelectric Point (pI)

35.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	50 - 291	4.3e-84	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006076)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14540 AT1G14550
fragaria_vesca	FvH4_2g30540 FvH4_4g13860 FvH4_4g36130
malus_domestica	MD13G1011000.v1.1 MD13G1011200.v1.1
prunus_persica	Prupe.1G341900_v2.0.a1
pyrus_communis	pycom13g00920
rosa_chinensis	RchiOBHm_Chr4g0445821 RchiOBHm_Chr4g0445871
rosa_laevigata	RLG00000005706 RLG00000005707
rosa_multiflora	Rmu_co8195238.1_g000001 Rmu_sc0000961.1_g000005 Rmu_sc0000961.1_g000010
rosa_roxburghii	Rroxscaffold_5G00386290 Rroxscaffold_5G00386310
rosa_rugosa	Rorug04G0365400
rosa_samantha	Rh4AG426900 Rh4AG427100 Rh4BG437300 Rh4CG454100 Rh4DG435200 Rh4DG435400
rosa_wichuraiana	Rw4G036540 Rw4G036570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	854
Acc16I	TGCGCA	1 cut(s)	385
AccB1I	GGYRCC	1 cut(s)	733
AccBSI	CCGCTC	3 cut(s)	407, 432, 739
AccII	CGCG	2 cut(s)	194, 569
AciI	CCGC	9 cut(s)	184, 192, 205, 405, 432, 532, 737, 879, 906
AclWI	GGATC	1 cut(s)	825
AcoI	YGGCCR	2 cut(s)	28, 189
AcsI	RAATTY	3 cut(s)	639, 727, 784
AcuI	CTGAAG	1 cut(s)	369
AfaI	GTAC	1 cut(s)	866
AfiI	CCNNNNNNNGG	2 cut(s)	180, 941
AgeI	ACCGGT	1 cut(s)	941
AgsI	TTSAA	3 cut(s)	299, 326, 812
AjnI	CCWGG	2 cut(s)	231, 367
AluBI	AGCT	5 cut(s)	167, 347, 494, 704, 950
AluI	AGCT	5 cut(s)	167, 347, 494, 704, 950
Alw21I	GWGCWC	3 cut(s)	80, 598, 979
Alw26I	GTCTC	2 cut(s)	862, 918
Alw44I	GTGCAC	1 cut(s)	594
AlwI	GGATC	1 cut(s)	825
Ama87I	CYCGRG	2 cut(s)	408, 740
AoxI	GGCC	3 cut(s)	28, 189, 559
ApaLI	GTGCAC	1 cut(s)	594
ApeKI	GCWGC	2 cut(s)	44, 618
ApoI	RAATTY	3 cut(s)	639, 727, 784
AseI	ATTAAT	1 cut(s)	930
AsiGI	ACCGGT	1 cut(s)	941
Asp700I	GAANNNNTTC	1 cut(s)	466
AspLEI	GCGC	3 cut(s)	94, 293, 386
AspS9I	GGNCC	1 cut(s)	434
AsuHPI	GGTGA	5 cut(s)	460, 731, 760, 895, 931
AvaI	CYCGRG	2 cut(s)	408, 740
AvaII	GGWCC	1 cut(s)	434
BaeGI	GKGCMC	1 cut(s)	598
BanI	GGYRCC	1 cut(s)	733
BauI	CACGAG	1 cut(s)	56
BbsI	GAAGAC	1 cut(s)	797
Bbv12I	GWGCWC	3 cut(s)	80, 598, 979
BbvI	GCAGC	2 cut(s)	31, 605
BccI	CCATC	2 cut(s)	181, 445
BceAI	ACGGC	1 cut(s)	410
BciT130I	CCWGG	2 cut(s)	233, 369
BcoDI	GTCTC	2 cut(s)	862, 918
BfaI	CTAG	2 cut(s)	257, 491
BfmI	CTRYAG	1 cut(s)	399
BisI	GCNGC	4 cut(s)	45, 192, 405, 619
BlsI	GCNGC	4 cut(s)	46, 193, 406, 620
Bme1390I	CCNGG	2 cut(s)	233, 369
Bme18I	GGWCC	1 cut(s)	434
BmeT110I	CYCGRG	2 cut(s)	408, 740
BmgT120I	GGNCC	1 cut(s)	434
BmiI	GGNNCC	2 cut(s)	735, 841
BmrFI	CCNGG	2 cut(s)	233, 369
BmrI	ACTGGG	1 cut(s)	464
BmsI	GCATC	6 cut(s)	232, 254, 403, 425, 712, 861
BmuI	ACTGGG	1 cut(s)	464
BpiI	GAAGAC	1 cut(s)	797
BpmI	CTGGAG	1 cut(s)	972
Bsa29I	ATCGAT	1 cut(s)	663
BsaJI	CCNNGG	4 cut(s)	31, 232, 367, 631
BsaWI	WCCGGW	1 cut(s)	941
Bsc4I	CCNNNNNNNGG	2 cut(s)	180, 941
Bse118I	RCCGGY	1 cut(s)	941
Bse1I	ACTGG	2 cut(s)	174, 459
BseBI	CCWGG	2 cut(s)	233, 369
BseCI	ATCGAT	1 cut(s)	663
BseDI	CCNNGG	4 cut(s)	31, 232, 367, 631
BseGI	GGATG	4 cut(s)	12, 192, 416, 418
BseLI	CCNNNNNNNGG	2 cut(s)	180, 941
BseNI	ACTGG	2 cut(s)	174, 459
BseSI	GKGCMC	1 cut(s)	598
BseXI	GCAGC	2 cut(s)	31, 605
Bsh1236I	CGCG	2 cut(s)	194, 569
BshFI	GGCC	3 cut(s)	30, 191, 561
BshNI	GGYRCC	1 cut(s)	733
BshTI	ACCGGT	1 cut(s)	941
BshVI	ATCGAT	1 cut(s)	663
BsiHKAI	GWGCWC	3 cut(s)	80, 598, 979
BsiHKCI	CYCGRG	2 cut(s)	408, 740
BsiSI	CCGG	2 cut(s)	27, 942
BslFI	GGGAC	1 cut(s)	181
BslI	CCNNNNNNNGG	2 cut(s)	180, 941
BsmAI	GTCTC	2 cut(s)	862, 918
BsmBI	CGTCTC	1 cut(s)	862
BsmFI	GGGAC	1 cut(s)	181
BsnI	GGCC	3 cut(s)	30, 191, 561
BsoBI	CYCGRG	2 cut(s)	408, 740
Bsp1286I	GDGCHC	3 cut(s)	80, 598, 979
Bsp143I	GATC	1 cut(s)	817
Bsp19I	CCATGG	1 cut(s)	31
BspACI	CCGC	9 cut(s)	184, 192, 205, 405, 432, 532, 737, 879, 906
BspANI	GGCC	3 cut(s)	30, 191, 561
BspDI	ATCGAT	1 cut(s)	663
BspFNI	CGCG	2 cut(s)	194, 569
BspHI	TCATGA	1 cut(s)	72
BspLI	GGNNCC	2 cut(s)	735, 841
BspPI	GGATC	1 cut(s)	825
BspT107I	GGYRCC	1 cut(s)	733
BsrBI	CCGCTC	3 cut(s)	407, 432, 739
BsrFI	RCCGGY	1 cut(s)	941
BsrI	ACTGG	2 cut(s)	174, 459
BssAI	RCCGGY	1 cut(s)	941
BssECI	CCNNGG	4 cut(s)	31, 232, 367, 631
BssMI	GATC	1 cut(s)	817
BssSI	CACGAG	1 cut(s)	56
BssT1I	CCWWGG	1 cut(s)	31
Bst2BI	CACGAG	1 cut(s)	56
Bst2UI	CCWGG	2 cut(s)	233, 369
Bst4CI	ACNGT	4 cut(s)	308, 448, 588, 869
Bst6I	CTCTTC	1 cut(s)	457
BstAPI	GCANNNNNTGC	1 cut(s)	422
BstC8I	GCNNGC	3 cut(s)	481, 616, 879
BstDEI	CTNAG	2 cut(s)	536, 556
BstDSI	CCRYGG	2 cut(s)	31, 631
BstF5I	GGATG	4 cut(s)	12, 192, 416, 418
BstFNI	CGCG	2 cut(s)	194, 569
BstHHI	GCGC	3 cut(s)	94, 293, 386
BstKTI	GATC	1 cut(s)	820
BstMAI	GTCTC	2 cut(s)	862, 918
BstMBI	GATC	1 cut(s)	817
BstMWI	GCNNNNNNNGC	8 cut(s)	50, 84, 404, 413, 422, 531, 558, 731
BstNI	CCWGG	2 cut(s)	233, 369
BstSCI	CCNGG	2 cut(s)	231, 367
BstSFI	CTRYAG	1 cut(s)	399
BstSLI	GKGCMC	1 cut(s)	598
BstUI	CGCG	2 cut(s)	194, 569
BstV1I	GCAGC	2 cut(s)	31, 605
BstV2I	GAAGAC	1 cut(s)	797
Bsu15I	ATCGAT	1 cut(s)	663
BsuRI	GGCC	3 cut(s)	30, 191, 561
BsuTUI	ATCGAT	1 cut(s)	663
BtgI	CCRYGG	2 cut(s)	31, 631
BtsCI	GGATG	4 cut(s)	12, 192, 416, 418
BtsI	GCAGTG	1 cut(s)	979
BtsIMutI	CAGTG	3 cut(s)	181, 584, 979
Cac8I	GCNNGC	3 cut(s)	481, 616, 879
CciI	TCATGA	1 cut(s)	72
CfoI	GCGC	3 cut(s)	94, 293, 386
Cfr10I	RCCGGY	1 cut(s)	941
Cfr13I	GGNCC	1 cut(s)	434
ClaI	ATCGAT	1 cut(s)	663
CseI	GACGC	3 cut(s)	183, 272, 716
Csp6I	GTAC	1 cut(s)	865
CspAI	ACCGGT	1 cut(s)	941
CviAII	CATG	3 cut(s)	32, 73, 218
CviQI	GTAC	1 cut(s)	865
DdeI	CTNAG	2 cut(s)	536, 556
DpnI	GATC	1 cut(s)	819
DpnII	GATC	1 cut(s)	817
DrdI	GACNNNNNNGTC	1 cut(s)	854
DseDI	GACNNNNNNGTC	1 cut(s)	854
EaeI	YGGCCR	2 cut(s)	28, 189
Eam1104I	CTCTTC	1 cut(s)	457
EarI	CTCTTC	1 cut(s)	457
EciI	GGCGGA	2 cut(s)	194, 199
Eco130I	CCWWGG	1 cut(s)	31
Eco147I	AGGCCT	1 cut(s)	561
Eco47I	GGWCC	1 cut(s)	434
Eco57I	CTGAAG	1 cut(s)	369
Eco88I	CYCGRG	2 cut(s)	408, 740
EcoRII	CCWGG	2 cut(s)	231, 367
EcoT14I	CCWWGG	1 cut(s)	31
EcoT22I	ATGCAT	2 cut(s)	247, 418
ErhI	CCWWGG	1 cut(s)	31
Esp3I	CGTCTC	1 cut(s)	862
FaeI	CATG	3 cut(s)	35, 76, 221
FaiI	YATR	8 cut(s)	33, 74, 114, 146, 158, 219, 332, 911
FaqI	GGGAC	1 cut(s)	181
FatI	CATG	3 cut(s)	31, 72, 217
FauI	CCCGC	1 cut(s)	886
Fnu4HI	GCNGC	4 cut(s)	45, 192, 405, 619
FokI	GGATG	4 cut(s)	19, 199, 403, 425
Fsp4HI	GCNGC	4 cut(s)	45, 192, 405, 619
FspBI	CTAG	2 cut(s)	257, 491
FspI	TGCGCA	1 cut(s)	385
GlaI	GCGC	3 cut(s)	93, 292, 385
GluI	GCNGC	4 cut(s)	45, 192, 405, 619
GsuI	CTGGAG	1 cut(s)	972
HaeIII	GGCC	3 cut(s)	30, 191, 561
HapII	CCGG	2 cut(s)	27, 942
HgaI	GACGC	3 cut(s)	183, 272, 716
HhaI	GCGC	3 cut(s)	94, 293, 386
Hin1II	CATG	3 cut(s)	35, 76, 221
Hin6I	GCGC	3 cut(s)	92, 291, 384
HinP1I	GCGC	3 cut(s)	92, 291, 384
HinfI	GANTC	4 cut(s)	467, 665, 790, 812
HpaII	CCGG	2 cut(s)	27, 942
HphI	GGTGA	5 cut(s)	460, 731, 760, 895, 931
Hpy166II	GTNNAC	2 cut(s)	503, 596
Hpy188I	TCNGA	4 cut(s)	795, 817, 862, 962
Hpy188III	TCNNGA	4 cut(s)	58, 73, 410, 809
Hpy8I	GTNNAC	2 cut(s)	503, 596
Hpy99I	CGWCG	1 cut(s)	696
HpyAV	CCTTC	4 cut(s)	279, 352, 793, 957
HpyCH4III	ACNGT	4 cut(s)	308, 448, 588, 869
HpyCH4IV	ACGT	1 cut(s)	691
HpyCH4V	TGCA	8 cut(s)	53, 245, 416, 584, 596, 653, 725, 972
HpyF10VI	GCNNNNNNNGC	8 cut(s)	50, 84, 404, 413, 422, 531, 558, 731
HpyF3I	CTNAG	2 cut(s)	536, 556
HpySE526I	ACGT	1 cut(s)	691
Hsp92II	CATG	3 cut(s)	35, 76, 221
HspAI	GCGC	3 cut(s)	92, 291, 384
Kzo9I	GATC	1 cut(s)	817
LmnI	GCTCC	1 cut(s)	271
Lsp1109I	GCAGC	2 cut(s)	31, 605
LweI	GCATC	6 cut(s)	232, 254, 403, 425, 712, 861
MaeI	CTAG	2 cut(s)	257, 491
MaeII	ACGT	1 cut(s)	691
MaeIII	GTNAC	3 cut(s)	622, 656, 748
MalI	GATC	1 cut(s)	819
MbiI	CCGCTC	3 cut(s)	407, 432, 739
MboI	GATC	1 cut(s)	817
MboII	GAAGA	5 cut(s)	93, 471, 474, 797, 808
MfeI	CAATTG	1 cut(s)	603
MhlI	GDGCHC	3 cut(s)	80, 598, 979
MluCI	AATT	6 cut(s)	95, 603, 639, 727, 772, 784
MnlI	CCTC	6 cut(s)	218, 311, 572, 830, 945, 949
Mph1103I	ATGCAT	2 cut(s)	247, 418
MroXI	GAANNNNTTC	1 cut(s)	466
MseI	TTAA	3 cut(s)	888, 915, 930
MslI	CAYNNNNRTG	3 cut(s)	36, 216, 908
MspA1I	CMGCKG	3 cut(s)	167, 704, 950
MspI	CCGG	2 cut(s)	27, 942
MspR9I	CCNGG	2 cut(s)	233, 369
MunI	CAATTG	1 cut(s)	603
MvaI	CCWGG	2 cut(s)	233, 369
MvnI	CGCG	2 cut(s)	194, 569
MwoI	GCNNNNNNNGC	8 cut(s)	50, 84, 404, 413, 422, 531, 558, 731
NcoI	CCATGG	1 cut(s)	31
NdeII	GATC	1 cut(s)	817
NlaIII	CATG	3 cut(s)	35, 76, 221
NlaIV	GGNNCC	2 cut(s)	735, 841
NmuCI	GTSAC	2 cut(s)	656, 748
NsbI	TGCGCA	1 cut(s)	385
NsiI	ATGCAT	2 cut(s)	247, 418
PaeR7I	CTCGAG	1 cut(s)	740
PagI	TCATGA	1 cut(s)	72
PceI	AGGCCT	1 cut(s)	561
PcsI	WCGNNNNNNNCGW	1 cut(s)	691
PdmI	GAANNNNTTC	1 cut(s)	466
PfeI	GAWTC	4 cut(s)	467, 665, 790, 812
PinAI	ACCGGT	1 cut(s)	941
PkrI	GCNGC	4 cut(s)	46, 193, 406, 620
PshBI	ATTAAT	1 cut(s)	930
Psp6I	CCWGG	2 cut(s)	231, 367
PspGI	CCWGG	2 cut(s)	231, 367
PspN4I	GGNNCC	2 cut(s)	735, 841
PspPI	GGNCC	1 cut(s)	434
PspXI	VCTCGAGB	1 cut(s)	740
PvuII	CAGCTG	3 cut(s)	167, 704, 950
RsaI	GTAC	1 cut(s)	866
RsaNI	GTAC	1 cut(s)	865
RseI	CAYNNNNRTG	3 cut(s)	36, 216, 908
SaqAI	TTAA	3 cut(s)	888, 915, 930
SatI	GCNGC	4 cut(s)	45, 192, 405, 619
Sau3AI	GATC	1 cut(s)	817
Sau96I	GGNCC	1 cut(s)	434
ScrFI	CCNGG	2 cut(s)	233, 369
SduI	GDGCHC	3 cut(s)	80, 598, 979
SfaNI	GCATC	6 cut(s)	232, 254, 403, 425, 712, 861
SfcI	CTRYAG	1 cut(s)	399
Sfr274I	CTCGAG	1 cut(s)	740
SinI	GGWCC	1 cut(s)	434
SlaI	CTCGAG	1 cut(s)	740
SmiMI	CAYNNNNRTG	3 cut(s)	36, 216, 908
SmlI	CTYRAG	1 cut(s)	740
SmoI	CTYRAG	1 cut(s)	740
Sse9I	AATT	6 cut(s)	95, 603, 639, 727, 772, 784
SseBI	AGGCCT	1 cut(s)	561
SsiI	CCGC	9 cut(s)	184, 192, 205, 405, 432, 532, 737, 879, 906
SspMI	CTAG	2 cut(s)	257, 491
StuI	AGGCCT	1 cut(s)	561
StyD4I	CCNGG	2 cut(s)	231, 367
StyI	CCWWGG	1 cut(s)	31
TaaI	ACNGT	4 cut(s)	308, 448, 588, 869
TaiI	ACGT	1 cut(s)	694
TaqI	TCGA	2 cut(s)	663, 741
TasI	AATT	6 cut(s)	95, 603, 639, 727, 772, 784
TatI	WGTACW	1 cut(s)	864
TauI	GCSGC	2 cut(s)	194, 407
TfiI	GAWTC	4 cut(s)	467, 665, 790, 812
Tru1I	TTAA	3 cut(s)	888, 915, 930
Tru9I	TTAA	3 cut(s)	888, 915, 930
TscAI	CASTG	3 cut(s)	181, 591, 979
TseFI	GTSAC	2 cut(s)	656, 748
TseI	GCWGC	2 cut(s)	44, 618
Tsp45I	GTSAC	2 cut(s)	656, 748
TspDTI	ATGAA	1 cut(s)	61
TspGWI	ACGGA	2 cut(s)	409, 620
TspRI	CASTG	3 cut(s)	181, 591, 979
VneI	GTGCAC	1 cut(s)	594
VpaK11BI	GGWCC	1 cut(s)	434
VspI	ATTAAT	1 cut(s)	930
XapI	RAATTY	3 cut(s)	639, 727, 784
XhoI	CTCGAG	1 cut(s)	740
XmnI	GAANNNNTTC	1 cut(s)	466
XspI	CTAG	2 cut(s)	257, 491
Zsp2I	ATGCAT	2 cut(s)	247, 418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.