Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0006076

Physical Location & Seq

Genomic Coordinates Forward (+)

65206104 .. 65207322

Gene Structure 1219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00386310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGATGAAGTACTTTAGCTCTAATGCAAATGTTGCCTCTGTTGCACTGCTGTTGTTGCTTGCCTTGATGAGCACAACAACCTCTGCTCAGCTCTCCTCGACATTTTATGACAAAGCCTGTCCAAATGCCCTCGCTACTATCAGAAAATCAATAAGAACAGCAGTCTCAGCAGAACGTCGGATGGCAGCCTCCCTAATCCGCCTGCATTTTCATGATTGCTTTGTTCAGGGTTGTGATGCATCAATCTTACTTGACGATACTTCTTCTATCACAGGCGAAAAGAACGCACTGCCTAATCAGAACTCTGTGAGAGGATATGGAGTAATAGATAATGCCAAATCTGAAGTGGAGAAACTATGCCCTGGTGTAGTTTCTTGTGCAGATATCGTTGCCGTGGCTGCTAGGGATGCTTCAGTTGCCGTTGGAGGTCCAGACTGGGCGGTGAAGCTTGGAAGAAGAGATTCGACCACAGCAAGCAAAACTCTAGCTGAAAGCTCGCTTCCCAGTTTCTTAGACAGCCTCGAAAGCCTTGCTAACAGATTTGCTGGTAATGGCCTCAATATCAGAGATTTGGTTGCGCTATCCGGTGCACATTCAATTGGACAAGCTCAGTGCTTCACATTCCGCGGTAGAATCTACAGCAACACCAGTGACATTGATGCAAACTTTGCTCGTACTCGCGGACGTGGTTGTCCCGCAGCAAATAACGTTGGTGATGCAAATTTGGCACCACTTGATTTGGTGACACCTAATCAATTGGACAACAACTACTTCAAGAACTTGATCCAGAAGAAGGGTCTTCTTGCATCTGATCAAGTTCTCTTTAGTGGAGGATCCACAGACAGCATTGTCTCGGAGTATAGCTCGAAACCTGCAAACTTCAAGGCTGATTCGCCGCCGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0006950 GO:0008150 GO:0009628 GO:0009987 GO:0033554 GO:0036293 GO:0036294 GO:0042221 GO:0050896 GO:0051716 GO:0070482 GO:0070887 GO:0071453 GO:0071456

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

301

Amino Acids

31.85

Weight (kDa)

8.13

Isoelectric Point (pI)

29.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	47 - 289	7.8e-81	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006076)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14540 AT1G14550
fragaria_vesca	FvH4_2g30540 FvH4_4g13860 FvH4_4g36130
malus_domestica	MD13G1011000.v1.1 MD13G1011200.v1.1
prunus_persica	Prupe.1G341900_v2.0.a1
pyrus_communis	pycom13g00920
rosa_chinensis	RchiOBHm_Chr4g0445821 RchiOBHm_Chr4g0445871
rosa_laevigata	RLG00000005706 RLG00000005707
rosa_multiflora	Rmu_co8195238.1_g000001 Rmu_sc0000961.1_g000005 Rmu_sc0000961.1_g000010
rosa_roxburghii	Rroxscaffold_5G00386290 Rroxscaffold_5G00386310
rosa_rugosa	Rorug04G0365400
rosa_samantha	Rh4AG426900 Rh4AG427100 Rh4BG437300 Rh4CG454100 Rh4DG435200 Rh4DG435400
rosa_wichuraiana	Rw4G036540 Rw4G036570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	690, 848
Acc36I	ACCTGC	1 cut(s)	880
AccB1I	GGYRCC	1 cut(s)	727
AccII	CGCG	2 cut(s)	627, 681
AciI	CCGC	8 cut(s)	199, 440, 625, 627, 681, 696, 896, 899
AclI	AACGTT	1 cut(s)	708
AclWI	GGATC	3 cut(s)	778, 828, 841
AcsI	RAATTY	1 cut(s)	721
AcuI	CTGAAG	2 cut(s)	363, 396
AfaI	GTAC	2 cut(s)	11, 676
AfiI	CCNNNNNNNGG	1 cut(s)	793
AgsI	TTSAA	3 cut(s)	597, 775, 883
AjiI	CACGTC	1 cut(s)	686
AjnI	CCWGG	1 cut(s)	361
AluBI	AGCT	7 cut(s)	18, 91, 448, 488, 495, 608, 864
AluI	AGCT	7 cut(s)	18, 91, 448, 488, 495, 608, 864
Alw21I	GWGCWC	2 cut(s)	74, 592
Alw26I	GTCTC	2 cut(s)	169, 856
Alw44I	GTGCAC	1 cut(s)	588
AlwI	GGATC	3 cut(s)	778, 828, 841
AoxI	GGCC	1 cut(s)	553
ApaLI	GTGCAC	1 cut(s)	588
ApeKI	GCWGC	3 cut(s)	185, 398, 698
ApoI	RAATTY	1 cut(s)	721
Asp700I	GAANNNNTTC	1 cut(s)	460
AspLEI	GCGC	1 cut(s)	580
AspS9I	GGNCC	1 cut(s)	428
AsuHPI	GGTGA	3 cut(s)	454, 725, 754
AvaII	GGWCC	1 cut(s)	428
BaeGI	GKGCMC	1 cut(s)	592
BamHI	GGATCC	1 cut(s)	833
BanI	GGYRCC	1 cut(s)	727
BbsI	GAAGAC	1 cut(s)	791
Bbv12I	GWGCWC	2 cut(s)	74, 592
BbvI	GCAGC	3 cut(s)	197, 385, 710
BccI	CCATC	1 cut(s)	175
BceAI	ACGGC	2 cut(s)	377, 404
BcgI	CGANNNNNNTGC	2 cut(s)	512, 546
BciT130I	CCWGG	1 cut(s)	363
BclI	TGATCA	1 cut(s)	811
BcoDI	GTCTC	2 cut(s)	169, 856
BfaI	CTAG	2 cut(s)	402, 485
BfmI	CTRYAG	1 cut(s)	637
BfuAI	ACCTGC	1 cut(s)	880
BisI	GCNGC	5 cut(s)	186, 399, 699, 896, 899
BlpI	GCTNAGC	1 cut(s)	87
BlsI	GCNGC	5 cut(s)	187, 400, 700, 897, 900
BmcAI	AGTACT	1 cut(s)	11
Bme1390I	CCNGG	1 cut(s)	363
Bme18I	GGWCC	1 cut(s)	428
BmgBI	CACGTC	1 cut(s)	686
BmgT120I	GGNCC	1 cut(s)	428
BmiI	GGNNCC	2 cut(s)	729, 835
BmrFI	CCNGG	1 cut(s)	363
BmrI	ACTGGG	2 cut(s)	445, 498
BmsI	GCATC	6 cut(s)	226, 248, 397, 649, 706, 815
BmuI	ACTGGG	2 cut(s)	445, 498
BpiI	GAAGAC	1 cut(s)	791
BplI	GAGNNNNNCTC	2 cut(s)	848, 880
Bpu1102I	GCTNAGC	1 cut(s)	87
BsaJI	CCNNGG	3 cut(s)	361, 393, 625
BsaWI	WCCGGW	1 cut(s)	584
Bsc4I	CCNNNNNNNGG	1 cut(s)	793
Bse1I	ACTGG	3 cut(s)	440, 504, 648
BseBI	CCWGG	1 cut(s)	363
BseDI	CCNNGG	3 cut(s)	361, 393, 625
BseGI	GGATG	2 cut(s)	186, 412
BseLI	CCNNNNNNNGG	1 cut(s)	793
BseMII	CTCAG	3 cut(s)	101, 180, 623
BseNI	ACTGG	3 cut(s)	440, 504, 648
BseRI	GAGGAG	1 cut(s)	85
BseSI	GKGCMC	1 cut(s)	592
BseXI	GCAGC	3 cut(s)	197, 385, 710
BsgI	GTGCAG	1 cut(s)	399
Bsh1236I	CGCG	2 cut(s)	627, 681
BshFI	GGCC	1 cut(s)	555
BshNI	GGYRCC	1 cut(s)	727
BsiHKAI	GWGCWC	2 cut(s)	74, 592
BsiSI	CCGG	1 cut(s)	585
BslFI	GGGAC	1 cut(s)	678
BslI	CCNNNNNNNGG	1 cut(s)	793
BsmAI	GTCTC	2 cut(s)	169, 856
BsmFI	GGGAC	1 cut(s)	678
BsnI	GGCC	1 cut(s)	555
Bsp1286I	GDGCHC	2 cut(s)	74, 592
Bsp143I	GATC	3 cut(s)	783, 811, 833
Bsp1720I	GCTNAGC	1 cut(s)	87
BspACI	CCGC	8 cut(s)	199, 440, 625, 627, 681, 696, 896, 899
BspANI	GGCC	1 cut(s)	555
BspCNI	CTCAG	3 cut(s)	100, 179, 622
BspFNI	CGCG	2 cut(s)	627, 681
BspHI	TCATGA	1 cut(s)	211
BspLI	GGNNCC	2 cut(s)	729, 835
BspMI	ACCTGC	1 cut(s)	880
BspPI	GGATC	3 cut(s)	778, 828, 841
BspT107I	GGYRCC	1 cut(s)	727
BsrI	ACTGG	3 cut(s)	440, 504, 648
BssECI	CCNNGG	3 cut(s)	361, 393, 625
BssMI	GATC	3 cut(s)	783, 811, 833
Bst2UI	CCWGG	1 cut(s)	363
Bst6I	CTCTTC	1 cut(s)	451
BstAPI	GCANNNNNTGC	2 cut(s)	32, 668
BstC8I	GCNNGC	4 cut(s)	60, 203, 475, 497
BstDEI	CTNAG	4 cut(s)	87, 166, 511, 609
BstDSI	CCRYGG	2 cut(s)	393, 625
BstF5I	GGATG	2 cut(s)	186, 412
BstFNI	CGCG	2 cut(s)	627, 681
BstHHI	GCGC	1 cut(s)	580
BstKTI	GATC	3 cut(s)	786, 814, 836
BstMAI	GTCTC	2 cut(s)	169, 856
BstMBI	GATC	3 cut(s)	783, 811, 833
BstNI	CCWGG	1 cut(s)	363
BstSCI	CCNGG	1 cut(s)	361
BstSFI	CTRYAG	1 cut(s)	637
BstSLI	GKGCMC	1 cut(s)	592
BstUI	CGCG	2 cut(s)	627, 681
BstV1I	GCAGC	3 cut(s)	197, 385, 710
BstV2I	GAAGAC	1 cut(s)	791
BstX2I	RGATCY	1 cut(s)	833
BstYI	RGATCY	1 cut(s)	833
BsuRI	GGCC	1 cut(s)	555
BtgI	CCRYGG	2 cut(s)	393, 625
BtrI	CACGTC	1 cut(s)	686
BtsCI	GGATG	2 cut(s)	186, 412
BtsI	GCAGTG	2 cut(s)	44, 287
BtsIMutI	CAGTG	4 cut(s)	44, 287, 617, 655
BveI	ACCTGC	1 cut(s)	880
Cac8I	GCNNGC	4 cut(s)	60, 203, 475, 497
CciI	TCATGA	1 cut(s)	211
CfoI	GCGC	1 cut(s)	580
Cfr13I	GGNCC	1 cut(s)	428
Cfr42I	CCGCGG	1 cut(s)	628
Csp6I	GTAC	2 cut(s)	10, 675
CspCI	CAANNNNNGTGG	2 cut(s)	720, 755
CviAII	CATG	2 cut(s)	212, 903
CviQI	GTAC	2 cut(s)	10, 675
DdeI	CTNAG	4 cut(s)	87, 166, 511, 609
DpnI	GATC	3 cut(s)	785, 813, 835
DpnII	GATC	3 cut(s)	783, 811, 833
DrdI	GACNNNNNNGTC	2 cut(s)	690, 848
DseDI	GACNNNNNNGTC	2 cut(s)	690, 848
Eam1104I	CTCTTC	1 cut(s)	451
EarI	CTCTTC	1 cut(s)	451
EciI	GGCGGA	1 cut(s)	188
Eco32I	GATATC	1 cut(s)	385
Eco47I	GGWCC	1 cut(s)	428
Eco57I	CTGAAG	2 cut(s)	363, 396
EcoRII	CCWGG	1 cut(s)	361
EcoRV	GATATC	1 cut(s)	385
EcoT22I	ATGCAT	1 cut(s)	241
FaeI	CATG	2 cut(s)	215, 906
FaiI	YATR	6 cut(s)	108, 213, 318, 358, 861, 904
FaqI	GGGAC	1 cut(s)	678
FatI	CATG	2 cut(s)	211, 902
FauI	CCCGC	1 cut(s)	703
FbaI	TGATCA	1 cut(s)	811
Fnu4HI	GCNGC	5 cut(s)	186, 399, 699, 896, 899
FokI	GGATG	2 cut(s)	193, 419
Fsp4HI	GCNGC	5 cut(s)	186, 399, 699, 896, 899
FspBI	CTAG	2 cut(s)	402, 485
GlaI	GCGC	1 cut(s)	579
GluI	GCNGC	5 cut(s)	186, 399, 699, 896, 899
HaeIII	GGCC	1 cut(s)	555
HapII	CCGG	1 cut(s)	585
HhaI	GCGC	1 cut(s)	580
Hin1II	CATG	2 cut(s)	215, 906
Hin6I	GCGC	1 cut(s)	578
HinP1I	GCGC	1 cut(s)	578
HindIII	AAGCTT	1 cut(s)	446
HinfI	GANTC	3 cut(s)	461, 633, 890
HpaII	CCGG	1 cut(s)	585
HphI	GGTGA	3 cut(s)	454, 725, 754
Hpy166II	GTNNAC	1 cut(s)	590
Hpy188I	TCNGA	7 cut(s)	143, 180, 300, 343, 566, 811, 856
Hpy188III	TCNNGA	4 cut(s)	212, 431, 775, 787
Hpy8I	GTNNAC	1 cut(s)	590
Hpy99I	CGWCG	1 cut(s)	180
HpyAV	CCTTC	1 cut(s)	787
HpyCH4IV	ACGT	3 cut(s)	175, 685, 708
HpyF3I	CTNAG	4 cut(s)	87, 166, 511, 609
HpySE526I	ACGT	3 cut(s)	175, 685, 708
Hsp92II	CATG	2 cut(s)	215, 906
HspAI	GCGC	1 cut(s)	578
Ksp22I	TGATCA	1 cut(s)	811
KspI	CCGCGG	1 cut(s)	628
Kzo9I	GATC	3 cut(s)	783, 811, 833
Lsp1109I	GCAGC	3 cut(s)	197, 385, 710
LweI	GCATC	6 cut(s)	226, 248, 397, 649, 706, 815
MaeI	CTAG	2 cut(s)	402, 485
MaeII	ACGT	3 cut(s)	175, 685, 708
MaeIII	GTNAC	2 cut(s)	650, 742
MalI	GATC	3 cut(s)	785, 813, 835
MboI	GATC	3 cut(s)	783, 811, 833
MboII	GAAGA	5 cut(s)	255, 465, 468, 791, 802
MfeI	CAATTG	2 cut(s)	597, 755
MflI	RGATCY	1 cut(s)	833
MhlI	GDGCHC	2 cut(s)	74, 592
MluCI	AATT	3 cut(s)	597, 721, 755
MmeI	TCCRAC	2 cut(s)	158, 403
Mph1103I	ATGCAT	1 cut(s)	241
MroXI	GAANNNNTTC	1 cut(s)	460
MslI	CAYNNNNRTG	1 cut(s)	210
MspA1I	CMGCKG	1 cut(s)	627
MspI	CCGG	1 cut(s)	585
MspR9I	CCNGG	1 cut(s)	363
MunI	CAATTG	2 cut(s)	597, 755
MvaI	CCWGG	1 cut(s)	363
MvnI	CGCG	2 cut(s)	627, 681
NdeII	GATC	3 cut(s)	783, 811, 833
NlaIII	CATG	2 cut(s)	215, 906
NlaIV	GGNNCC	2 cut(s)	729, 835
NmuCI	GTSAC	2 cut(s)	650, 742
NsiI	ATGCAT	1 cut(s)	241
PagI	TCATGA	1 cut(s)	211
PdmI	GAANNNNTTC	1 cut(s)	460
PfeI	GAWTC	3 cut(s)	461, 633, 890
PkrI	GCNGC	5 cut(s)	187, 400, 700, 897, 900
Psp1406I	AACGTT	1 cut(s)	708
Psp6I	CCWGG	1 cut(s)	361
PspGI	CCWGG	1 cut(s)	361
PspN4I	GGNNCC	2 cut(s)	729, 835
PspPI	GGNCC	1 cut(s)	428
PsuI	RGATCY	1 cut(s)	833
RsaI	GTAC	2 cut(s)	11, 676
RsaNI	GTAC	2 cut(s)	10, 675
RseI	CAYNNNNRTG	1 cut(s)	210
SacII	CCGCGG	1 cut(s)	628
SatI	GCNGC	5 cut(s)	186, 399, 699, 896, 899
Sau3AI	GATC	3 cut(s)	783, 811, 833
Sau96I	GGNCC	1 cut(s)	428
ScaI	AGTACT	1 cut(s)	11
ScrFI	CCNGG	1 cut(s)	363
SduI	GDGCHC	2 cut(s)	74, 592
SfaNI	GCATC	6 cut(s)	226, 248, 397, 649, 706, 815
SfcI	CTRYAG	1 cut(s)	637
Sfr303I	CCGCGG	1 cut(s)	628
SgrBI	CCGCGG	1 cut(s)	628
SinI	GGWCC	1 cut(s)	428
SmiMI	CAYNNNNRTG	1 cut(s)	210
Sse9I	AATT	3 cut(s)	597, 721, 755
SsiI	CCGC	8 cut(s)	199, 440, 625, 627, 681, 696, 896, 899
SspMI	CTAG	2 cut(s)	402, 485
StyD4I	CCNGG	1 cut(s)	361
TaiI	ACGT	3 cut(s)	178, 688, 711
TaqI	TCGA	4 cut(s)	98, 464, 522, 866
TasI	AATT	3 cut(s)	597, 721, 755
TatI	WGTACW	1 cut(s)	9
TauI	GCSGC	2 cut(s)	898, 901
TfiI	GAWTC	3 cut(s)	461, 633, 890
TscAI	CASTG	4 cut(s)	51, 294, 617, 655
TseFI	GTSAC	2 cut(s)	650, 742
TseI	GCWGC	3 cut(s)	185, 398, 698
Tsp45I	GTSAC	2 cut(s)	650, 742
TspDTI	ATGAA	2 cut(s)	20, 200
TspRI	CASTG	4 cut(s)	51, 294, 617, 655
VneI	GTGCAC	1 cut(s)	588
VpaK11BI	GGWCC	1 cut(s)	428
XapI	RAATTY	1 cut(s)	721
XcmI	CCANNNNNNNNNTGG	1 cut(s)	343
XmnI	GAANNNNTTC	1 cut(s)	460
XspI	CTAG	2 cut(s)	402, 485
ZrmI	AGTACT	1 cut(s)	11
Zsp2I	ATGCAT	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.