Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0006076

Physical Location & Seq

Genomic Coordinates Reverse (-)

1020917 .. 1022076

Gene Structure 1160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005706

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGAAGTCTTTTAGCTCCAATGCAAATGTTGCCTCAGTTGCTTTGCTGTTGTTGCTTGCCCTGATGAGCACAGCAAGCTCAGCTAAGCTCTCCTCGACATTTTATGACAAAGCCTGTCCAAATGCTCTCGCTACGATCAGAAAATCAATAAGAACAGCAGTCTCAGCCGAACGTCGGATGGCAGCCTCCCTAATCCGCCTGCATTTCCATGATTGCTTTGTTCAGGGTTGTGATGCATCAATCTTACTTGACGATACTTCTTCTATCACAGGCGAAAAGAACGCACTGCCTAATCTGAACTCTGTGAGAGGATATGGAGTCATAGATAATGCCAAATCTGAAGTGGAGAAGCTATGTCCTGGGGTAGTTTCTTGTGCAGATATCGTTGCCGTGGCTGCTAGGGATGCTTCAGTTGCCGTTGGAGGTCCAGACTGGGCGGTGAAGCTTGGAAGAAGAGATTCGACCACAGCAAGCAAAACTCTTGCTGAAAGCTCGCTTCCCAGTTTCTTAGACAGCCTCGAAAGCCTTGCCAACAGATTTGCTGGTAATGGCCTCAATATCAGAGATTTGGTTGCGCTATCCGGTGCACATTCAATTGGACAAGCTCAGTGCTTCACATTCCGCGGTAGAATCTACAGCAACACCAGTGACATTGATGCAAACTTTGCTCGTACTCGCGGACGTGGTTGTCCAGCAGCAACTAACGTTGGTAATGCAAATTTGGCACCACTTGATTTGGTGACACCTAATCAATTGGACAACAACTACTTCAAGAACTTGATCCAGAAGAAGGGTCTTCTTGCATCTGATCAAGTTCTCTTTAGTGGAGGATCCACAGACAGCATTGTCTCGGAGTATAGCTCAAAACCTGCAAACTTCAAGGCTGATTTTGCCGCCGCTATGATCAAGATGGGAAACATTAACCCTCTCACTGGCTCAAATGGGCAGATAAGAAGGATATGTAGTGCTCTCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0006950 GO:0008150 GO:0009628 GO:0009987 GO:0033554 GO:0036293 GO:0036294 GO:0042221 GO:0050896 GO:0051716 GO:0070482 GO:0070887 GO:0071453 GO:0071456

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

326

Amino Acids

34.24

Weight (kDa)

9.02

Isoelectric Point (pI)

27.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	46 - 288	1.9e-80	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006076)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14540 AT1G14550
fragaria_vesca	FvH4_2g30540 FvH4_4g13860 FvH4_4g36130
malus_domestica	MD13G1011000.v1.1 MD13G1011200.v1.1
prunus_persica	Prupe.1G341900_v2.0.a1
pyrus_communis	pycom13g00920
rosa_chinensis	RchiOBHm_Chr4g0445821 RchiOBHm_Chr4g0445871
rosa_laevigata	RLG00000005706 RLG00000005707
rosa_multiflora	Rmu_co8195238.1_g000001 Rmu_sc0000961.1_g000005 Rmu_sc0000961.1_g000010
rosa_roxburghii	Rroxscaffold_5G00386290 Rroxscaffold_5G00386310
rosa_rugosa	Rorug04G0365400
rosa_samantha	Rh4AG426900 Rh4AG427100 Rh4BG437300 Rh4CG454100 Rh4DG435200 Rh4DG435400
rosa_wichuraiana	Rw4G036540 Rw4G036570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	687, 845
Acc36I	ACCTGC	1 cut(s)	877
AccB1I	GGYRCC	1 cut(s)	724
AccII	CGCG	2 cut(s)	624, 678
AciI	CCGC	7 cut(s)	196, 437, 622, 624, 678, 894, 897
AclI	AACGTT	1 cut(s)	705
AclWI	GGATC	3 cut(s)	775, 825, 838
AcsI	RAATTY	1 cut(s)	718
AcuI	CTGAAG	2 cut(s)	360, 393
AfaI	GTAC	1 cut(s)	673
AfiI	CCNNNNNNNGG	3 cut(s)	174, 790, 932
AgsI	TTSAA	3 cut(s)	594, 772, 880
AjiI	CACGTC	1 cut(s)	683
AjnI	CCWGG	1 cut(s)	358
AluBI	AGCT	9 cut(s)	15, 78, 83, 88, 352, 445, 492, 605, 861
AluI	AGCT	9 cut(s)	15, 78, 83, 88, 352, 445, 492, 605, 861
Alw21I	GWGCWC	3 cut(s)	71, 589, 970
Alw26I	GTCTC	2 cut(s)	166, 853
Alw44I	GTGCAC	1 cut(s)	585
AlwI	GGATC	3 cut(s)	775, 825, 838
AoxI	GGCC	1 cut(s)	550
ApaLI	GTGCAC	1 cut(s)	585
ApeKI	GCWGC	3 cut(s)	182, 395, 695
ApoI	RAATTY	1 cut(s)	718
Asp700I	GAANNNNTTC	1 cut(s)	457
AspLEI	GCGC	1 cut(s)	577
AspS9I	GGNCC	1 cut(s)	425
AsuHPI	GGTGA	2 cut(s)	451, 751
AvaII	GGWCC	1 cut(s)	425
BaeGI	GKGCMC	1 cut(s)	589
BamHI	GGATCC	1 cut(s)	830
BanI	GGYRCC	1 cut(s)	724
BbsI	GAAGAC	1 cut(s)	788
Bbv12I	GWGCWC	3 cut(s)	71, 589, 970
BbvI	GCAGC	3 cut(s)	194, 382, 707
BccI	CCATC	2 cut(s)	172, 904
BceAI	ACGGC	2 cut(s)	374, 401
BcgI	CGANNNNNNTGC	2 cut(s)	509, 543
BciT130I	CCWGG	1 cut(s)	360
BclI	TGATCA	2 cut(s)	808, 903
BcoDI	GTCTC	2 cut(s)	166, 853
BfaI	CTAG	1 cut(s)	399
BfmI	CTRYAG	1 cut(s)	634
BfuAI	ACCTGC	1 cut(s)	877
BisI	GCNGC	5 cut(s)	183, 396, 696, 894, 897
BlpI	GCTNAGC	2 cut(s)	79, 84
BlsI	GCNGC	5 cut(s)	184, 397, 697, 895, 898
Bme1390I	CCNGG	1 cut(s)	360
Bme18I	GGWCC	1 cut(s)	425
BmgBI	CACGTC	1 cut(s)	683
BmgT120I	GGNCC	1 cut(s)	425
BmiI	GGNNCC	2 cut(s)	726, 832
BmrFI	CCNGG	1 cut(s)	360
BmrI	ACTGGG	2 cut(s)	442, 495
BmsI	GCATC	5 cut(s)	223, 245, 394, 646, 812
BmuI	ACTGGG	2 cut(s)	442, 495
BpiI	GAAGAC	1 cut(s)	788
BplI	GAGNNNNNCTC	2 cut(s)	845, 877
Bpu1102I	GCTNAGC	2 cut(s)	79, 84
BsaJI	CCNNGG	3 cut(s)	359, 390, 622
BsaWI	WCCGGW	1 cut(s)	581
Bsc4I	CCNNNNNNNGG	3 cut(s)	174, 790, 932
Bse1I	ACTGG	4 cut(s)	437, 501, 645, 937
BseBI	CCWGG	1 cut(s)	360
BseDI	CCNNGG	3 cut(s)	359, 390, 622
BseGI	GGATG	2 cut(s)	183, 409
BseLI	CCNNNNNNNGG	3 cut(s)	174, 790, 932
BseMII	CTCAG	4 cut(s)	48, 93, 177, 620
BseNI	ACTGG	4 cut(s)	437, 501, 645, 937
BseRI	GAGGAG	1 cut(s)	82
BseSI	GKGCMC	1 cut(s)	589
BseXI	GCAGC	3 cut(s)	194, 382, 707
BsgI	GTGCAG	1 cut(s)	396
Bsh1236I	CGCG	2 cut(s)	624, 678
BshFI	GGCC	1 cut(s)	552
BshNI	GGYRCC	1 cut(s)	724
BsiHKAI	GWGCWC	3 cut(s)	71, 589, 970
BsiSI	CCGG	1 cut(s)	582
BslI	CCNNNNNNNGG	3 cut(s)	174, 790, 932
BsmAI	GTCTC	2 cut(s)	166, 853
BsnI	GGCC	1 cut(s)	552
Bsp1286I	GDGCHC	3 cut(s)	71, 589, 970
Bsp143I	GATC	5 cut(s)	135, 780, 808, 830, 903
Bsp1720I	GCTNAGC	2 cut(s)	79, 84
BspACI	CCGC	7 cut(s)	196, 437, 622, 624, 678, 894, 897
BspANI	GGCC	1 cut(s)	552
BspCNI	CTCAG	4 cut(s)	47, 92, 176, 619
BspFNI	CGCG	2 cut(s)	624, 678
BspLI	GGNNCC	2 cut(s)	726, 832
BspMI	ACCTGC	1 cut(s)	877
BspPI	GGATC	3 cut(s)	775, 825, 838
BspT107I	GGYRCC	1 cut(s)	724
BsrI	ACTGG	4 cut(s)	437, 501, 645, 937
BssECI	CCNNGG	3 cut(s)	359, 390, 622
BssMI	GATC	5 cut(s)	135, 780, 808, 830, 903
Bst2UI	CCWGG	1 cut(s)	360
Bst6I	CTCTTC	1 cut(s)	448
BstAPI	GCANNNNNTGC	2 cut(s)	29, 665
BstC8I	GCNNGC	5 cut(s)	57, 76, 200, 472, 494
BstDEI	CTNAG	6 cut(s)	34, 79, 84, 163, 508, 606
BstDSI	CCRYGG	2 cut(s)	390, 622
BstF5I	GGATG	2 cut(s)	183, 409
BstFNI	CGCG	2 cut(s)	624, 678
BstHHI	GCGC	1 cut(s)	577
BstKTI	GATC	5 cut(s)	138, 783, 811, 833, 906
BstMAI	GTCTC	2 cut(s)	166, 853
BstMBI	GATC	5 cut(s)	135, 780, 808, 830, 903
BstNI	CCWGG	1 cut(s)	360
BstSCI	CCNGG	1 cut(s)	358
BstSFI	CTRYAG	1 cut(s)	634
BstSLI	GKGCMC	1 cut(s)	589
BstUI	CGCG	2 cut(s)	624, 678
BstV1I	GCAGC	3 cut(s)	194, 382, 707
BstV2I	GAAGAC	1 cut(s)	788
BstX2I	RGATCY	1 cut(s)	830
BstYI	RGATCY	1 cut(s)	830
BsuRI	GGCC	1 cut(s)	552
BtgI	CCRYGG	2 cut(s)	390, 622
BtrI	CACGTC	1 cut(s)	683
BtsCI	GGATG	2 cut(s)	183, 409
BtsI	GCAGTG	1 cut(s)	284
BtsIMutI	CAGTG	4 cut(s)	284, 614, 652, 930
BveI	ACCTGC	1 cut(s)	877
Cac8I	GCNNGC	5 cut(s)	57, 76, 200, 472, 494
CfoI	GCGC	1 cut(s)	577
Cfr13I	GGNCC	1 cut(s)	425
Cfr42I	CCGCGG	1 cut(s)	625
Csp6I	GTAC	1 cut(s)	672
CspCI	CAANNNNNGTGG	2 cut(s)	717, 752
CviAII	CATG	1 cut(s)	209
CviQI	GTAC	1 cut(s)	672
DdeI	CTNAG	6 cut(s)	34, 79, 84, 163, 508, 606
DpnI	GATC	5 cut(s)	137, 782, 810, 832, 905
DpnII	GATC	5 cut(s)	135, 780, 808, 830, 903
DrdI	GACNNNNNNGTC	2 cut(s)	687, 845
DseDI	GACNNNNNNGTC	2 cut(s)	687, 845
Eam1104I	CTCTTC	1 cut(s)	448
EarI	CTCTTC	1 cut(s)	448
EciI	GGCGGA	1 cut(s)	185
Eco32I	GATATC	1 cut(s)	382
Eco47I	GGWCC	1 cut(s)	425
Eco57I	CTGAAG	2 cut(s)	360, 393
EcoRII	CCWGG	1 cut(s)	358
EcoRV	GATATC	1 cut(s)	382
EcoT22I	ATGCAT	1 cut(s)	238
FaeI	CATG	1 cut(s)	212
FaiI	YATR	8 cut(s)	105, 210, 315, 323, 355, 858, 902, 961
FatI	CATG	1 cut(s)	208
FbaI	TGATCA	2 cut(s)	808, 903
Fnu4HI	GCNGC	5 cut(s)	183, 396, 696, 894, 897
FokI	GGATG	2 cut(s)	190, 416
Fsp4HI	GCNGC	5 cut(s)	183, 396, 696, 894, 897
FspBI	CTAG	1 cut(s)	399
GlaI	GCGC	1 cut(s)	576
GluI	GCNGC	5 cut(s)	183, 396, 696, 894, 897
HaeIII	GGCC	1 cut(s)	552
HapII	CCGG	1 cut(s)	582
HhaI	GCGC	1 cut(s)	577
Hin1II	CATG	1 cut(s)	212
Hin6I	GCGC	1 cut(s)	575
HinP1I	GCGC	1 cut(s)	575
HindIII	AAGCTT	1 cut(s)	443
HinfI	GANTC	3 cut(s)	318, 458, 630
HpaII	CCGG	1 cut(s)	582
HphI	GGTGA	2 cut(s)	451, 751
Hpy166II	GTNNAC	1 cut(s)	587
Hpy188I	TCNGA	7 cut(s)	140, 177, 297, 340, 563, 808, 853
Hpy188III	TCNNGA	4 cut(s)	428, 772, 784, 907
Hpy8I	GTNNAC	1 cut(s)	587
Hpy99I	CGWCG	1 cut(s)	177
HpyAV	CCTTC	2 cut(s)	784, 948
HpyCH4IV	ACGT	3 cut(s)	172, 682, 705
HpyCH4V	TGCA	9 cut(s)	23, 202, 236, 377, 587, 659, 716, 803, 872
HpyF3I	CTNAG	6 cut(s)	34, 79, 84, 163, 508, 606
HpySE526I	ACGT	3 cut(s)	172, 682, 705
Hsp92II	CATG	1 cut(s)	212
HspAI	GCGC	1 cut(s)	575
Ksp22I	TGATCA	2 cut(s)	808, 903
KspI	CCGCGG	1 cut(s)	625
Kzo9I	GATC	5 cut(s)	135, 780, 808, 830, 903
LmnI	GCTCC	1 cut(s)	20
Lsp1109I	GCAGC	3 cut(s)	194, 382, 707
LweI	GCATC	5 cut(s)	223, 245, 394, 646, 812
MaeI	CTAG	1 cut(s)	399
MaeII	ACGT	3 cut(s)	172, 682, 705
MaeIII	GTNAC	2 cut(s)	647, 739
MalI	GATC	5 cut(s)	137, 782, 810, 832, 905
MboI	GATC	5 cut(s)	135, 780, 808, 830, 903
MboII	GAAGA	5 cut(s)	252, 462, 465, 788, 799
MfeI	CAATTG	2 cut(s)	594, 752
MflI	RGATCY	1 cut(s)	830
MhlI	GDGCHC	3 cut(s)	71, 589, 970
MluCI	AATT	3 cut(s)	594, 718, 752
MlyI	GAGTC	1 cut(s)	327
MmeI	TCCRAC	2 cut(s)	155, 400
MnlI	CCTC	9 cut(s)	43, 103, 196, 302, 416, 527, 563, 821, 936
Mph1103I	ATGCAT	1 cut(s)	238
MroXI	GAANNNNTTC	1 cut(s)	457
MseI	TTAA	1 cut(s)	921
MslI	CAYNNNNRTG	1 cut(s)	207
MspA1I	CMGCKG	1 cut(s)	624
MspI	CCGG	1 cut(s)	582
MspR9I	CCNGG	1 cut(s)	360
MunI	CAATTG	2 cut(s)	594, 752
MvaI	CCWGG	1 cut(s)	360
MvnI	CGCG	2 cut(s)	624, 678
NdeII	GATC	5 cut(s)	135, 780, 808, 830, 903
NlaIII	CATG	1 cut(s)	212
NlaIV	GGNNCC	2 cut(s)	726, 832
NmuCI	GTSAC	2 cut(s)	647, 739
NsiI	ATGCAT	1 cut(s)	238
PdmI	GAANNNNTTC	1 cut(s)	457
PfeI	GAWTC	2 cut(s)	458, 630
PkrI	GCNGC	5 cut(s)	184, 397, 697, 895, 898
PleI	GAGTC	1 cut(s)	326
PpsI	GAGTC	1 cut(s)	326
Psp1406I	AACGTT	1 cut(s)	705
Psp6I	CCWGG	1 cut(s)	358
PspGI	CCWGG	1 cut(s)	358
PspN4I	GGNNCC	2 cut(s)	726, 832
PspPI	GGNCC	1 cut(s)	425
PsuI	RGATCY	1 cut(s)	830
RsaI	GTAC	1 cut(s)	673
RsaNI	GTAC	1 cut(s)	672
RseI	CAYNNNNRTG	1 cut(s)	207
SacII	CCGCGG	1 cut(s)	625
SaqAI	TTAA	1 cut(s)	921
SatI	GCNGC	5 cut(s)	183, 396, 696, 894, 897
Sau3AI	GATC	5 cut(s)	135, 780, 808, 830, 903
Sau96I	GGNCC	1 cut(s)	425
SchI	GAGTC	1 cut(s)	327
ScrFI	CCNGG	1 cut(s)	360
SduI	GDGCHC	3 cut(s)	71, 589, 970
SfaNI	GCATC	5 cut(s)	223, 245, 394, 646, 812
SfcI	CTRYAG	1 cut(s)	634
Sfr303I	CCGCGG	1 cut(s)	625
SgrBI	CCGCGG	1 cut(s)	625
SinI	GGWCC	1 cut(s)	425
SmiMI	CAYNNNNRTG	1 cut(s)	207
Sse9I	AATT	3 cut(s)	594, 718, 752
SsiI	CCGC	7 cut(s)	196, 437, 622, 624, 678, 894, 897
SspMI	CTAG	1 cut(s)	399
StyD4I	CCNGG	1 cut(s)	358
TaiI	ACGT	3 cut(s)	175, 685, 708
TaqI	TCGA	3 cut(s)	95, 461, 519
TasI	AATT	3 cut(s)	594, 718, 752
TauI	GCSGC	2 cut(s)	896, 899
TfiI	GAWTC	2 cut(s)	458, 630
Tru1I	TTAA	1 cut(s)	921
Tru9I	TTAA	1 cut(s)	921
TscAI	CASTG	4 cut(s)	291, 614, 652, 937
TseFI	GTSAC	2 cut(s)	647, 739
TseI	GCWGC	3 cut(s)	182, 395, 695
Tsp45I	GTSAC	2 cut(s)	647, 739
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	4 cut(s)	291, 614, 652, 937
VneI	GTGCAC	1 cut(s)	585
VpaK11BI	GGWCC	1 cut(s)	425
XapI	RAATTY	1 cut(s)	718
XcmI	CCANNNNNNNNNTGG	1 cut(s)	340
XmnI	GAANNNNTTC	1 cut(s)	457
XspI	CTAG	1 cut(s)	399
Zsp2I	ATGCAT	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.