Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8195238.1

Orthogroup ID

OG0006076

Physical Location & Seq

Genomic Coordinates Reverse (-)

133 .. 704

Gene Structure 572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8195238.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

cttggaagaagagattcgaccacagcaagcaaaactctagctgaaagctcgcttcccagtttcttagacagcctcgaaagccttgctaacagattttctggtaatggcctcagtgtcagagatttggttgcactatccggtgcacattcaattggacaagctcagtgcttcacattccgcggtagaatctacagcaacactagtgacattgatgcaaactttgctcgtactcgcggacgtggttgtccagctgcaaataacgttggtaatgcaaatttggcaccacttgatttggtgacacctaatcaattggacaacaactacttcaagaacttgatccagaagaagggtcttcttgcatctgatcaagttctcttcagtggaggatccacagacagcattgtctcggagtatagctcaaaacctgcaaacttcaaggctgattttgccgccgccatgatcaagatgggaaacattaaccctctcactggctcaaatgggcagataagaaagatatgtagtgctctcaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0006950 GO:0008150 GO:0009628 GO:0009987 GO:0033554 GO:0036293 GO:0036294 GO:0042221 GO:0050896 GO:0051716 GO:0070482 GO:0070887 GO:0071453 GO:0071456

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

177

Amino Acids

18.75

Weight (kDa)

9.33

Isoelectric Point (pI)

18.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006076)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14540 AT1G14550
fragaria_vesca	FvH4_2g30540 FvH4_4g13860 FvH4_4g36130
malus_domestica	MD13G1011000.v1.1 MD13G1011200.v1.1
prunus_persica	Prupe.1G341900_v2.0.a1
pyrus_communis	pycom13g00920
rosa_chinensis	RchiOBHm_Chr4g0445821 RchiOBHm_Chr4g0445871
rosa_laevigata	RLG00000005706 RLG00000005707
rosa_multiflora	Rmu_co8195238.1_g000001 Rmu_sc0000961.1_g000005 Rmu_sc0000961.1_g000010
rosa_roxburghii	Rroxscaffold_5G00386290 Rroxscaffold_5G00386310
rosa_rugosa	Rorug04G0365400
rosa_samantha	Rh4AG426900 Rh4AG427100 Rh4BG437300 Rh4CG454100 Rh4DG435200 Rh4DG435400
rosa_wichuraiana	Rw4G036540 Rw4G036570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	243, 401
Acc36I	ACCTGC	1 cut(s)	433
AccB1I	GGYRCC	1 cut(s)	280
AccII	CGCG	2 cut(s)	180, 234
AciI	CCGC	5 cut(s)	178, 180, 234, 450, 453
AclI	AACGTT	1 cut(s)	261
AclWI	GGATC	3 cut(s)	331, 381, 394
AcsI	RAATTY	1 cut(s)	274
AcuI	CTGAAG	1 cut(s)	361
AfaI	GTAC	1 cut(s)	229
AfiI	CCNNNNNNNGG	2 cut(s)	346, 488
AgsI	TTSAA	3 cut(s)	150, 328, 436
AhlI	ACTAGT	1 cut(s)	200
AjiI	CACGTC	1 cut(s)	239
AluBI	AGCT	5 cut(s)	41, 48, 161, 251, 417
AluI	AGCT	5 cut(s)	41, 48, 161, 251, 417
Alw21I	GWGCWC	2 cut(s)	145, 526
Alw26I	GTCTC	1 cut(s)	409
Alw44I	GTGCAC	1 cut(s)	141
AlwI	GGATC	3 cut(s)	331, 381, 394
AoxI	GGCC	1 cut(s)	106
ApaLI	GTGCAC	1 cut(s)	141
ApeKI	GCWGC	1 cut(s)	251
ApoI	RAATTY	1 cut(s)	274
Asp700I	GAANNNNTTC	1 cut(s)	13
AsuHPI	GGTGA	1 cut(s)	307
BaeGI	GKGCMC	1 cut(s)	145
BamHI	GGATCC	1 cut(s)	386
BanI	GGYRCC	1 cut(s)	280
BbsI	GAAGAC	1 cut(s)	344
Bbv12I	GWGCWC	2 cut(s)	145, 526
BbvI	GCAGC	1 cut(s)	238
BccI	CCATC	1 cut(s)	460
BcgI	CGANNNNNNTGC	2 cut(s)	65, 99
BclI	TGATCA	2 cut(s)	364, 459
BcoDI	GTCTC	1 cut(s)	409
BcuI	ACTAGT	1 cut(s)	200
BfaI	CTAG	2 cut(s)	38, 201
BfmI	CTRYAG	1 cut(s)	190
BfuAI	ACCTGC	1 cut(s)	433
BisI	GCNGC	3 cut(s)	252, 450, 453
BlsI	GCNGC	3 cut(s)	253, 451, 454
BmgBI	CACGTC	1 cut(s)	239
BmiI	GGNNCC	2 cut(s)	282, 388
BmrI	ACTGGG	1 cut(s)	51
BmsI	GCATC	2 cut(s)	202, 368
BmuI	ACTGGG	1 cut(s)	51
BpiI	GAAGAC	1 cut(s)	344
BplI	GAGNNNNNCTC	2 cut(s)	401, 433
BsaJI	CCNNGG	1 cut(s)	178
BsaWI	WCCGGW	1 cut(s)	137
Bsc4I	CCNNNNNNNGG	2 cut(s)	346, 488
Bse1I	ACTGG	2 cut(s)	57, 493
BseDI	CCNNGG	1 cut(s)	178
BseLI	CCNNNNNNNGG	2 cut(s)	346, 488
BseMII	CTCAG	2 cut(s)	124, 176
BseNI	ACTGG	2 cut(s)	57, 493
BseSI	GKGCMC	1 cut(s)	145
BseXI	GCAGC	1 cut(s)	238
Bsh1236I	CGCG	2 cut(s)	180, 234
BshFI	GGCC	1 cut(s)	108
BshNI	GGYRCC	1 cut(s)	280
BsiHKAI	GWGCWC	2 cut(s)	145, 526
BsiSI	CCGG	1 cut(s)	138
BslI	CCNNNNNNNGG	2 cut(s)	346, 488
BsmAI	GTCTC	1 cut(s)	409
BsnI	GGCC	1 cut(s)	108
Bsp1286I	GDGCHC	2 cut(s)	145, 526
Bsp143I	GATC	4 cut(s)	336, 364, 386, 459
BspACI	CCGC	5 cut(s)	178, 180, 234, 450, 453
BspANI	GGCC	1 cut(s)	108
BspCNI	CTCAG	2 cut(s)	123, 175
BspFNI	CGCG	2 cut(s)	180, 234
BspLI	GGNNCC	2 cut(s)	282, 388
BspMI	ACCTGC	1 cut(s)	433
BspPI	GGATC	3 cut(s)	331, 381, 394
BspT107I	GGYRCC	1 cut(s)	280
BsrI	ACTGG	2 cut(s)	57, 493
BssECI	CCNNGG	1 cut(s)	178
BssMI	GATC	4 cut(s)	336, 364, 386, 459
Bst6I	CTCTTC	2 cut(s)	4, 380
BstAPI	GCANNNNNTGC	1 cut(s)	221
BstC8I	GCNNGC	2 cut(s)	28, 50
BstDEI	CTNAG	3 cut(s)	64, 110, 162
BstDSI	CCRYGG	1 cut(s)	178
BstFNI	CGCG	2 cut(s)	180, 234
BstKTI	GATC	4 cut(s)	339, 367, 389, 462
BstMAI	GTCTC	1 cut(s)	409
BstMBI	GATC	4 cut(s)	336, 364, 386, 459
BstMWI	GCNNNNNNNGC	4 cut(s)	78, 221, 278, 446
BstSFI	CTRYAG	1 cut(s)	190
BstSLI	GKGCMC	1 cut(s)	145
BstUI	CGCG	2 cut(s)	180, 234
BstV1I	GCAGC	1 cut(s)	238
BstV2I	GAAGAC	1 cut(s)	344
BstX2I	RGATCY	1 cut(s)	386
BstYI	RGATCY	1 cut(s)	386
BsuRI	GGCC	1 cut(s)	108
BtgI	CCRYGG	1 cut(s)	178
BtrI	CACGTC	1 cut(s)	239
BtsIMutI	CAGTG	4 cut(s)	118, 170, 385, 486
BveI	ACCTGC	1 cut(s)	433
Cac8I	GCNNGC	2 cut(s)	28, 50
Cfr42I	CCGCGG	1 cut(s)	181
Csp6I	GTAC	1 cut(s)	228
CspCI	CAANNNNNGTGG	2 cut(s)	273, 308
CviAII	CATG	1 cut(s)	457
CviQI	GTAC	1 cut(s)	228
DdeI	CTNAG	3 cut(s)	64, 110, 162
DpnI	GATC	4 cut(s)	338, 366, 388, 461
DpnII	GATC	4 cut(s)	336, 364, 386, 459
DrdI	GACNNNNNNGTC	2 cut(s)	243, 401
DseDI	GACNNNNNNGTC	2 cut(s)	243, 401
Eam1104I	CTCTTC	2 cut(s)	4, 380
EarI	CTCTTC	2 cut(s)	4, 380
Eco57I	CTGAAG	1 cut(s)	361
FaeI	CATG	1 cut(s)	460
FaiI	YATR	3 cut(s)	414, 458, 517
FatI	CATG	1 cut(s)	456
FbaI	TGATCA	2 cut(s)	364, 459
Fnu4HI	GCNGC	3 cut(s)	252, 450, 453
Fsp4HI	GCNGC	3 cut(s)	252, 450, 453
FspBI	CTAG	2 cut(s)	38, 201
GluI	GCNGC	3 cut(s)	252, 450, 453
HaeIII	GGCC	1 cut(s)	108
HapII	CCGG	1 cut(s)	138
Hin1II	CATG	1 cut(s)	460
HinfI	GANTC	2 cut(s)	14, 186
HpaII	CCGG	1 cut(s)	138
HphI	GGTGA	1 cut(s)	307
Hpy166II	GTNNAC	1 cut(s)	143
Hpy188I	TCNGA	3 cut(s)	119, 364, 409
Hpy188III	TCNNGA	3 cut(s)	328, 340, 463
Hpy8I	GTNNAC	1 cut(s)	143
HpyAV	CCTTC	1 cut(s)	340
HpyCH4IV	ACGT	2 cut(s)	238, 261
HpyCH4V	TGCA	7 cut(s)	131, 143, 215, 254, 272, 359, 428
HpyF10VI	GCNNNNNNNGC	4 cut(s)	78, 221, 278, 446
HpyF3I	CTNAG	3 cut(s)	64, 110, 162
HpySE526I	ACGT	2 cut(s)	238, 261
Hsp92II	CATG	1 cut(s)	460
Ksp22I	TGATCA	2 cut(s)	364, 459
KspI	CCGCGG	1 cut(s)	181
Kzo9I	GATC	4 cut(s)	336, 364, 386, 459
LpnPI	CCDG	7 cut(s)	70, 84, 151, 261, 353, 438, 474
Lsp1109I	GCAGC	1 cut(s)	238
LweI	GCATC	2 cut(s)	202, 368
MaeI	CTAG	2 cut(s)	38, 201
MaeII	ACGT	2 cut(s)	238, 261
MaeIII	GTNAC	2 cut(s)	203, 295
MalI	GATC	4 cut(s)	338, 366, 388, 461
MboI	GATC	4 cut(s)	336, 364, 386, 459
MboII	GAAGA	5 cut(s)	18, 21, 344, 355, 367
MfeI	CAATTG	2 cut(s)	150, 308
MflI	RGATCY	1 cut(s)	386
MhlI	GDGCHC	2 cut(s)	145, 526
MluCI	AATT	3 cut(s)	150, 274, 308
MnlI	CCTC	4 cut(s)	83, 119, 377, 492
MroXI	GAANNNNTTC	1 cut(s)	13
MseI	TTAA	1 cut(s)	477
MspA1I	CMGCKG	2 cut(s)	180, 251
MspI	CCGG	1 cut(s)	138
MunI	CAATTG	2 cut(s)	150, 308
MvnI	CGCG	2 cut(s)	180, 234
MwoI	GCNNNNNNNGC	4 cut(s)	78, 221, 278, 446
NdeII	GATC	4 cut(s)	336, 364, 386, 459
NlaIII	CATG	1 cut(s)	460
NlaIV	GGNNCC	2 cut(s)	282, 388
NmuCI	GTSAC	2 cut(s)	203, 295
PdmI	GAANNNNTTC	1 cut(s)	13
PfeI	GAWTC	2 cut(s)	14, 186
PkrI	GCNGC	3 cut(s)	253, 451, 454
Psp1406I	AACGTT	1 cut(s)	261
PspN4I	GGNNCC	2 cut(s)	282, 388
PsuI	RGATCY	1 cut(s)	386
PvuII	CAGCTG	1 cut(s)	251
RsaI	GTAC	1 cut(s)	229
RsaNI	GTAC	1 cut(s)	228
SacII	CCGCGG	1 cut(s)	181
SaqAI	TTAA	1 cut(s)	477
SatI	GCNGC	3 cut(s)	252, 450, 453
Sau3AI	GATC	4 cut(s)	336, 364, 386, 459
SduI	GDGCHC	2 cut(s)	145, 526
SetI	ASST	9 cut(s)	43, 50, 163, 241, 253, 264, 304, 419, 427
SfaNI	GCATC	2 cut(s)	202, 368
SfcI	CTRYAG	1 cut(s)	190
Sfr303I	CCGCGG	1 cut(s)	181
SgrBI	CCGCGG	1 cut(s)	181
SpeI	ACTAGT	1 cut(s)	200
Sse9I	AATT	3 cut(s)	150, 274, 308
SsiI	CCGC	5 cut(s)	178, 180, 234, 450, 453
SspMI	CTAG	2 cut(s)	38, 201
TaiI	ACGT	2 cut(s)	241, 264
TaqI	TCGA	2 cut(s)	17, 75
TasI	AATT	3 cut(s)	150, 274, 308
TauI	GCSGC	2 cut(s)	452, 455
TfiI	GAWTC	2 cut(s)	14, 186
Tru1I	TTAA	1 cut(s)	477
Tru9I	TTAA	1 cut(s)	477
TscAI	CASTG	4 cut(s)	118, 170, 385, 493
TseFI	GTSAC	2 cut(s)	203, 295
TseI	GCWGC	1 cut(s)	251
Tsp45I	GTSAC	2 cut(s)	203, 295
TspRI	CASTG	4 cut(s)	118, 170, 385, 493
VneI	GTGCAC	1 cut(s)	141
XapI	RAATTY	1 cut(s)	274
XcmI	CCANNNNNNNNNTGG	1 cut(s)	463
XmnI	GAANNNNTTC	1 cut(s)	13
XspI	CTAG	2 cut(s)	38, 201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.