Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000961.1

Orthogroup ID

OG0006076

Physical Location & Seq

Genomic Coordinates Reverse (-)

22205 .. 23364

Gene Structure 1160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000961.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

atgatgaagtacttcagctctaatgcaaatgtcgcctctgttgcactgctgttgttgcttgccttgatgagcacaaccacctctgctcagctctcctccacattttatgacaaagcctgtccaaatgctctcgctacgatcagaaaatcaataagaacagcagtctcagcagaacgtcggatggctgcctccctaatccgcctccatttccatgattgctttgttcagggttgtgatgcatcaatcttacttgatgatacttcttctatcacaggcgaaaagaacgcacggcctaatcagaactctgtgagaggatatggagtcatagataatgccaaatctgaggtggagaaactatgtccgggtgtagtttcttgtgcagatatcgtcgccgtggctgctagggatgcttcagttgccgttggaggtccagactgggcggtgaagcttggaagaagagattcgaccacagcaagcaaaactctagctgaaagctcgcttcccagtttcttagacagcctcgaaagccttgctgacagattttctggtaatggcctcagtgtcagagatttggttgcactatccggtgcacattcaattggacaagctcagtgcttcacattccgcggtagaatctacagcaacactagtgacattgatgcaaactttgctcgtactcgcggacgtggttgtccagctgcaaataacgttggtaatgcaaatttggcaccacttgatttggtgacacctaatcaattggacaacaactacttcaagaacttgatccagaagaagggtcttcttgcatctgatcaagttctcttcagtggaggatccacagacagcattgtctcggagtatagctcaaaacctgcaaacttcaaggctgattttgccgccgccatgatcaagatgggaaacattaaccctctcactggctcaaatgggcagataagaaagatatgtagtgctctcaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0006950 GO:0008150 GO:0009628 GO:0009987 GO:0033554 GO:0036293 GO:0036294 GO:0042221 GO:0050896 GO:0051716 GO:0070482 GO:0070887 GO:0071453 GO:0071456

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

326

Amino Acids

34.51

Weight (kDa)

8.89

Isoelectric Point (pI)

23.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006076)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14540 AT1G14550
fragaria_vesca	FvH4_2g30540 FvH4_4g13860 FvH4_4g36130
malus_domestica	MD13G1011000.v1.1 MD13G1011200.v1.1
prunus_persica	Prupe.1G341900_v2.0.a1
pyrus_communis	pycom13g00920
rosa_chinensis	RchiOBHm_Chr4g0445821 RchiOBHm_Chr4g0445871
rosa_laevigata	RLG00000005706 RLG00000005707
rosa_multiflora	Rmu_co8195238.1_g000001 Rmu_sc0000961.1_g000005 Rmu_sc0000961.1_g000010
rosa_roxburghii	Rroxscaffold_5G00386290 Rroxscaffold_5G00386310
rosa_rugosa	Rorug04G0365400
rosa_samantha	Rh4AG426900 Rh4AG427100 Rh4BG437300 Rh4CG454100 Rh4DG435200 Rh4DG435400
rosa_wichuraiana	Rw4G036540 Rw4G036570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	690, 848
Acc36I	ACCTGC	1 cut(s)	880
AccB1I	GGYRCC	1 cut(s)	727
AccII	CGCG	2 cut(s)	627, 681
AciI	CCGC	7 cut(s)	199, 440, 625, 627, 681, 897, 900
AclI	AACGTT	1 cut(s)	708
AclWI	GGATC	3 cut(s)	778, 828, 841
AcsI	RAATTY	1 cut(s)	721
AcuI	CTGAAG	2 cut(s)	396, 808
AfaI	GTAC	2 cut(s)	11, 676
AfiI	CCNNNNNNNGG	2 cut(s)	793, 935
AgsI	TTSAA	3 cut(s)	597, 775, 883
AhlI	ACTAGT	1 cut(s)	647
AjiI	CACGTC	1 cut(s)	686
AluBI	AGCT	8 cut(s)	18, 91, 448, 488, 495, 608, 698, 864
AluI	AGCT	8 cut(s)	18, 91, 448, 488, 495, 608, 698, 864
Alw21I	GWGCWC	3 cut(s)	74, 592, 973
Alw26I	GTCTC	2 cut(s)	169, 856
Alw44I	GTGCAC	1 cut(s)	588
AlwI	GGATC	3 cut(s)	778, 828, 841
AoxI	GGCC	2 cut(s)	290, 553
ApaLI	GTGCAC	1 cut(s)	588
ApeKI	GCWGC	3 cut(s)	185, 398, 698
ApoI	RAATTY	1 cut(s)	721
Asp700I	GAANNNNTTC	2 cut(s)	11, 460
AspS9I	GGNCC	1 cut(s)	428
AsuC2I	CCSGG	1 cut(s)	363
AsuHPI	GGTGA	2 cut(s)	454, 754
AvaII	GGWCC	1 cut(s)	428
BaeGI	GKGCMC	1 cut(s)	592
BamHI	GGATCC	1 cut(s)	833
BanI	GGYRCC	1 cut(s)	727
BbsI	GAAGAC	1 cut(s)	791
Bbv12I	GWGCWC	3 cut(s)	74, 592, 973
BbvI	GCAGC	3 cut(s)	172, 385, 685
BccI	CCATC	2 cut(s)	175, 907
BceAI	ACGGC	3 cut(s)	305, 377, 404
BcgI	CGANNNNNNTGC	2 cut(s)	512, 546
BclI	TGATCA	2 cut(s)	811, 906
BcnI	CCSGG	1 cut(s)	363
BcoDI	GTCTC	2 cut(s)	169, 856
BcuI	ACTAGT	1 cut(s)	647
BfaI	CTAG	3 cut(s)	402, 485, 648
BfmI	CTRYAG	1 cut(s)	637
BfuAI	ACCTGC	1 cut(s)	880
BisI	GCNGC	5 cut(s)	186, 399, 699, 897, 900
BlpI	GCTNAGC	1 cut(s)	87
BlsI	GCNGC	5 cut(s)	187, 400, 700, 898, 901
BmcAI	AGTACT	1 cut(s)	11
Bme1390I	CCNGG	1 cut(s)	363
Bme18I	GGWCC	1 cut(s)	428
BmgBI	CACGTC	1 cut(s)	686
BmgT120I	GGNCC	1 cut(s)	428
BmiI	GGNNCC	2 cut(s)	729, 835
BmrFI	CCNGG	1 cut(s)	363
BmrI	ACTGGG	2 cut(s)	445, 498
BmsI	GCATC	5 cut(s)	226, 248, 397, 649, 815
BmuI	ACTGGG	2 cut(s)	445, 498
BpiI	GAAGAC	1 cut(s)	791
BplI	GAGNNNNNCTC	2 cut(s)	848, 880
Bpu1102I	GCTNAGC	1 cut(s)	87
BpuMI	CCSGG	1 cut(s)	363
BsaJI	CCNNGG	2 cut(s)	393, 625
BsaWI	WCCGGW	1 cut(s)	584
Bsc4I	CCNNNNNNNGG	2 cut(s)	793, 935
Bse1I	ACTGG	3 cut(s)	440, 504, 940
BseDI	CCNNGG	2 cut(s)	393, 625
BseGI	GGATG	2 cut(s)	186, 412
BseLI	CCNNNNNNNGG	2 cut(s)	793, 935
BseMII	CTCAG	5 cut(s)	101, 180, 333, 571, 623
BseNI	ACTGG	3 cut(s)	440, 504, 940
BseRI	GAGGAG	1 cut(s)	85
BseSI	GKGCMC	1 cut(s)	592
BseXI	GCAGC	3 cut(s)	172, 385, 685
BsgI	GTGCAG	1 cut(s)	399
Bsh1236I	CGCG	2 cut(s)	627, 681
BshFI	GGCC	2 cut(s)	292, 555
BshNI	GGYRCC	1 cut(s)	727
BsiHKAI	GWGCWC	3 cut(s)	74, 592, 973
BsiSI	CCGG	2 cut(s)	362, 585
BslI	CCNNNNNNNGG	2 cut(s)	793, 935
BsmAI	GTCTC	2 cut(s)	169, 856
BsnI	GGCC	2 cut(s)	292, 555
Bsp1286I	GDGCHC	3 cut(s)	74, 592, 973
Bsp143I	GATC	5 cut(s)	138, 783, 811, 833, 906
Bsp1720I	GCTNAGC	1 cut(s)	87
BspACI	CCGC	7 cut(s)	199, 440, 625, 627, 681, 897, 900
BspANI	GGCC	2 cut(s)	292, 555
BspCNI	CTCAG	5 cut(s)	100, 179, 334, 570, 622
BspFNI	CGCG	2 cut(s)	627, 681
BspLI	GGNNCC	2 cut(s)	729, 835
BspMI	ACCTGC	1 cut(s)	880
BspPI	GGATC	3 cut(s)	778, 828, 841
BspT107I	GGYRCC	1 cut(s)	727
BsrI	ACTGG	3 cut(s)	440, 504, 940
BssECI	CCNNGG	2 cut(s)	393, 625
BssMI	GATC	5 cut(s)	138, 783, 811, 833, 906
Bst6I	CTCTTC	2 cut(s)	451, 827
BstAPI	GCANNNNNTGC	1 cut(s)	668
BstC8I	GCNNGC	3 cut(s)	60, 475, 497
BstDEI	CTNAG	6 cut(s)	87, 166, 342, 511, 557, 609
BstDSI	CCRYGG	2 cut(s)	393, 625
BstF5I	GGATG	2 cut(s)	186, 412
BstFNI	CGCG	2 cut(s)	627, 681
BstKTI	GATC	5 cut(s)	141, 786, 814, 836, 909
BstMAI	GTCTC	2 cut(s)	169, 856
BstMBI	GATC	5 cut(s)	138, 783, 811, 833, 906
BstSCI	CCNGG	1 cut(s)	361
BstSFI	CTRYAG	1 cut(s)	637
BstSLI	GKGCMC	1 cut(s)	592
BstUI	CGCG	2 cut(s)	627, 681
BstV1I	GCAGC	3 cut(s)	172, 385, 685
BstV2I	GAAGAC	1 cut(s)	791
BstX2I	RGATCY	1 cut(s)	833
BstYI	RGATCY	1 cut(s)	833
BsuRI	GGCC	2 cut(s)	292, 555
BtgI	CCRYGG	2 cut(s)	393, 625
BtrI	CACGTC	1 cut(s)	686
BtsCI	GGATG	2 cut(s)	186, 412
BtsI	GCAGTG	1 cut(s)	44
BtsIMutI	CAGTG	5 cut(s)	44, 565, 617, 832, 933
BveI	ACCTGC	1 cut(s)	880
Cac8I	GCNNGC	3 cut(s)	60, 475, 497
Cfr13I	GGNCC	1 cut(s)	428
Cfr42I	CCGCGG	1 cut(s)	628
Csp6I	GTAC	2 cut(s)	10, 675
CspCI	CAANNNNNGTGG	2 cut(s)	720, 755
CviAII	CATG	2 cut(s)	212, 904
CviQI	GTAC	2 cut(s)	10, 675
DdeI	CTNAG	6 cut(s)	87, 166, 342, 511, 557, 609
DpnI	GATC	5 cut(s)	140, 785, 813, 835, 908
DpnII	GATC	5 cut(s)	138, 783, 811, 833, 906
DrdI	GACNNNNNNGTC	2 cut(s)	690, 848
DseDI	GACNNNNNNGTC	2 cut(s)	690, 848
Eam1104I	CTCTTC	2 cut(s)	451, 827
EarI	CTCTTC	2 cut(s)	451, 827
EciI	GGCGGA	1 cut(s)	188
Eco32I	GATATC	1 cut(s)	385
Eco47I	GGWCC	1 cut(s)	428
Eco57I	CTGAAG	2 cut(s)	396, 808
EcoRV	GATATC	1 cut(s)	385
EcoT22I	ATGCAT	1 cut(s)	241
FaeI	CATG	2 cut(s)	215, 907
FaiI	YATR	8 cut(s)	108, 213, 318, 326, 358, 861, 905, 964
FatI	CATG	2 cut(s)	211, 903
FbaI	TGATCA	2 cut(s)	811, 906
Fnu4HI	GCNGC	5 cut(s)	186, 399, 699, 897, 900
FokI	GGATG	2 cut(s)	193, 419
Fsp4HI	GCNGC	5 cut(s)	186, 399, 699, 897, 900
FspBI	CTAG	3 cut(s)	402, 485, 648
GluI	GCNGC	5 cut(s)	186, 399, 699, 897, 900
HaeIII	GGCC	2 cut(s)	292, 555
HapII	CCGG	2 cut(s)	362, 585
Hin1II	CATG	2 cut(s)	215, 907
HindIII	AAGCTT	1 cut(s)	446
HinfI	GANTC	3 cut(s)	321, 461, 633
HpaII	CCGG	2 cut(s)	362, 585
HphI	GGTGA	2 cut(s)	454, 754
Hpy166II	GTNNAC	1 cut(s)	590
Hpy188I	TCNGA	7 cut(s)	143, 180, 300, 343, 566, 811, 856
Hpy188III	TCNNGA	4 cut(s)	431, 775, 787, 910
Hpy8I	GTNNAC	1 cut(s)	590
Hpy99I	CGWCG	2 cut(s)	180, 392
HpyAV	CCTTC	1 cut(s)	787
HpyCH4IV	ACGT	3 cut(s)	175, 685, 708
HpyF3I	CTNAG	6 cut(s)	87, 166, 342, 511, 557, 609
HpySE526I	ACGT	3 cut(s)	175, 685, 708
Hsp92II	CATG	2 cut(s)	215, 907
Ksp22I	TGATCA	2 cut(s)	811, 906
KspI	CCGCGG	1 cut(s)	628
Kzo9I	GATC	5 cut(s)	138, 783, 811, 833, 906
Lsp1109I	GCAGC	3 cut(s)	172, 385, 685
LweI	GCATC	5 cut(s)	226, 248, 397, 649, 815
MaeI	CTAG	3 cut(s)	402, 485, 648
MaeII	ACGT	3 cut(s)	175, 685, 708
MaeIII	GTNAC	2 cut(s)	650, 742
MalI	GATC	5 cut(s)	140, 785, 813, 835, 908
MboI	GATC	5 cut(s)	138, 783, 811, 833, 906
MboII	GAAGA	6 cut(s)	255, 465, 468, 791, 802, 814
MfeI	CAATTG	2 cut(s)	597, 755
MflI	RGATCY	1 cut(s)	833
MhlI	GDGCHC	3 cut(s)	74, 592, 973
MluCI	AATT	3 cut(s)	597, 721, 755
MlyI	GAGTC	1 cut(s)	330
MmeI	TCCRAC	2 cut(s)	158, 403
Mph1103I	ATGCAT	1 cut(s)	241
MroXI	GAANNNNTTC	2 cut(s)	11, 460
MseI	TTAA	1 cut(s)	924
MslI	CAYNNNNRTG	1 cut(s)	210
MspA1I	CMGCKG	2 cut(s)	627, 698
MspI	CCGG	2 cut(s)	362, 585
MspR9I	CCNGG	1 cut(s)	363
MunI	CAATTG	2 cut(s)	597, 755
MvnI	CGCG	2 cut(s)	627, 681
NciI	CCSGG	1 cut(s)	363
NdeII	GATC	5 cut(s)	138, 783, 811, 833, 906
NlaIII	CATG	2 cut(s)	215, 907
NlaIV	GGNNCC	2 cut(s)	729, 835
NmuCI	GTSAC	2 cut(s)	650, 742
NsiI	ATGCAT	1 cut(s)	241
PdmI	GAANNNNTTC	2 cut(s)	11, 460
PfeI	GAWTC	2 cut(s)	461, 633
PkrI	GCNGC	5 cut(s)	187, 400, 700, 898, 901
PleI	GAGTC	1 cut(s)	329
PpsI	GAGTC	1 cut(s)	329
Psp1406I	AACGTT	1 cut(s)	708
PspN4I	GGNNCC	2 cut(s)	729, 835
PspPI	GGNCC	1 cut(s)	428
PsuI	RGATCY	1 cut(s)	833
PvuII	CAGCTG	1 cut(s)	698
RsaI	GTAC	2 cut(s)	11, 676
RsaNI	GTAC	2 cut(s)	10, 675
RseI	CAYNNNNRTG	1 cut(s)	210
SacII	CCGCGG	1 cut(s)	628
SaqAI	TTAA	1 cut(s)	924
SatI	GCNGC	5 cut(s)	186, 399, 699, 897, 900
Sau3AI	GATC	5 cut(s)	138, 783, 811, 833, 906
Sau96I	GGNCC	1 cut(s)	428
ScaI	AGTACT	1 cut(s)	11
SchI	GAGTC	1 cut(s)	330
ScrFI	CCNGG	1 cut(s)	363
SduI	GDGCHC	3 cut(s)	74, 592, 973
SfaNI	GCATC	5 cut(s)	226, 248, 397, 649, 815
SfcI	CTRYAG	1 cut(s)	637
Sfr303I	CCGCGG	1 cut(s)	628
SgrBI	CCGCGG	1 cut(s)	628
SinI	GGWCC	1 cut(s)	428
SmiMI	CAYNNNNRTG	1 cut(s)	210
SpeI	ACTAGT	1 cut(s)	647
Sse9I	AATT	3 cut(s)	597, 721, 755
SsiI	CCGC	7 cut(s)	199, 440, 625, 627, 681, 897, 900
SspMI	CTAG	3 cut(s)	402, 485, 648
StyD4I	CCNGG	1 cut(s)	361
TaiI	ACGT	3 cut(s)	178, 688, 711
TaqI	TCGA	2 cut(s)	464, 522
TasI	AATT	3 cut(s)	597, 721, 755
TatI	WGTACW	1 cut(s)	9
TauI	GCSGC	2 cut(s)	899, 902
TfiI	GAWTC	2 cut(s)	461, 633
Tru1I	TTAA	1 cut(s)	924
Tru9I	TTAA	1 cut(s)	924
TscAI	CASTG	5 cut(s)	51, 565, 617, 832, 940
TseFI	GTSAC	2 cut(s)	650, 742
TseI	GCWGC	3 cut(s)	185, 398, 698
Tsp45I	GTSAC	2 cut(s)	650, 742
TspDTI	ATGAA	1 cut(s)	20
TspRI	CASTG	5 cut(s)	51, 565, 617, 832, 940
VneI	GTGCAC	1 cut(s)	588
VpaK11BI	GGWCC	1 cut(s)	428
XapI	RAATTY	1 cut(s)	721
XcmI	CCANNNNNNNNNTGG	2 cut(s)	343, 910
XmnI	GAANNNNTTC	2 cut(s)	11, 460
XspI	CTAG	3 cut(s)	402, 485, 648
ZrmI	AGTACT	1 cut(s)	11
Zsp2I	ATGCAT	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.