Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003605

Physical Location & Seq

Genomic Coordinates Reverse (-)

5093961 .. 5098270

Gene Structure 4310 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G14790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3324 bp

ATGGGGAAGACAATTCAAGTGTTTGGATTCCCTAATGGTGTGAGCGCAGAAGAAGTTAAGAAGTTTCTTGAAAGACTCACTGGTTCAGGCACTGTTTACGCAATCAAAGTTAGACAACCAAAGAAAGGTGGTCCAAGAGTCTATGCCATTGTTCAATTCACATCTGAGAGACATACGAGGCTGATCATCACTGCGGCAGCAGAACGTCTTTACTATGGAAGATCTTATCTCAAGGCTTTTGAAGTTGAACAAGACATTGTTCCAAAGCCAAGAGCTTCATTACACACCATCTCTGGTTTAAAGATGTTCTTTGGATGTCAAGTCTCGACTAAGAAGTTTTTAACTCTATGGAGTGCTCAAGATGTTTGTGTCTCGTTTGGAATTGGGATGAGGAAACTGCATTTTTCGTTTTCTTGGTATCAAAAGGATTATCGTCTTGAGCTTTCGTATGAGAATATATGGCAGATTGATTTGCATTCTCCGCAAGGACGATCATCGAAGTTTCTTGTGATTCAGGTGATTGGTGCTCCTAAAATATTTGAGAAAGAGGATCAACCTATCAATCTTTTGTTTGGAATAATGGATTTTTACAGTGATGGGTCTGATGAGCAATGGATTAGAACTACAGATTTCACTTCATCTTCTTGTATTGGTCAATCAACAGCGTTTTGTTTAGAGCTTCCTGTTCATCTTAATGTTCCTGATTTCAGAGAGAATTTTGCCAACTATGCAGAGCACAGAGCCAGCTCTTTTCTCATTGAATCTGGTTCTAGCTATTCATCTAATGCTAACACACTTGTTCCTGTTGTTGATCCTCCTCCAGGGTTTAGTTTGCCTTTTGAGATCTTGTTTAAACTTAACACATTGGTGCAGAACGCGTGTCTCTCCGGGCCAGCTCTTGATCTTGACTTTTATCGGTTGCTTAATCAGAAAAAATATGATAGAGCTCTCATAGATCACTGTCTTGAAAAACTCTTTCACCTTGGAGAATGTTGCTATGAGCCTGCTCATTGGCTTCGCGATGAGTACAAGAAGTGGATATCGAAAGGAAAGCTTCCACTGTCTCCTACAATATCTCTTGATGATGGACTTGTTTATATGTATCGCGTTCAAGTTACACCAGCAAGAGTCTATTTCTCTGGACCGGAGGTGAATGTTTCTAATCGTGTGCTTCGACATTACTCCAAGTATATCAACAACTTCCTCAGGGTCTCATTTGTTGATGAAGATCTTGAAAAGGTTCGTTCCATGGATCTATCTCCACGCTCTTCTACTCAAAGAAGAACCAAGTTATACGACAGGATATATTCTGTTCTTCGCGATGGGATTGTCATAGGCGATAAGAAGTTTGAGTTTCTCGCCTTTTCTTCCAGCCAGTTGCGGGAGAACTCTGCTTGGATGTTTGCACCAATAGATCGGATTACAGCAGCACATATCAGAGCTTGGATGGGTGATTTTGACCATATAAGAAATGTAGCTAAATATGCTGCAAGGCTTGGTCAATCTTTTAGCTCTTCAAGAGAGACACTTAATGTTAGGAGTGATGAGATTGAAGTGATTCCTGATGTTGAGATTATATCTTTAGGGACACGCTATGTGTTTTCCGATGGAATAGGAAAGATATCAGCTGAATTTGCTAGAAAGGTAGCGAGGAAATGTGGTCTTACAGAGTTTTCTCCATCTGCTTTTCAAATCCGTTATGGCGGTTATAAAGGAGTGGTGGCTGTTGATCCAAACTCATCAAAGAAACTGTCTCTGAGGAAGAGTATGAGCAAATTCGAATCGGAGAACACCAAGCTTGATGTTCTGGCGTGGAGCAAGTACCAACCTTGTTATATGAACAGACAACTGATTACACTTTTGTCTACTCTTGGAGTTACGGACAGTGTGTTTGAGAAGAAACAAAGGGAAGTTGTGGATCGTCTCGACGCAATCTTGACTCATCCTTTGGAAGCTCACGAGGCTCTTGGTTTAATGGCTCCAGGGGAAAACACAAATATTCTCAAGGCATTGATCTTGTGTGGCTATAAACCTGACGCTGAACCTTTCCTTTCAATGATGCTTCAGAATTTCAGGGCATCTAAGTTGTTGGAACTACGGACAAAAACAAGGATTTTCATTTCTGGTGGAAGATCTATGATGGGATGCCTAGACGAGACCAGAACACTGGAGTATGGTCAGGTAGTAGTGCAGTATTCAGATCCCATGAGGCCGGGAAGGCGATTCATCATCACCGGACCTGTTGTTGTTGCCAAAAACCCATGCCTGCATCCTGGTGACGTGCGTGTTCTTCAAGCTGTCAATGTCCCAGCTTTAAATCATATGGTGGACTGCGTTGTGTTCCCGCAAAAGGGCTTGAGGCCACACCCAAATGAATGTTCTGGGAGTGATTTAGATGGAGATATTTACTTTGTATGTTGGGATCAAGAATTGGTTCCGCCAAGAACGTCTGAACCAATGGACTACACTCCTGAACCAACTCAAATCTTGGATCATGATGTCACAATTGAGGAAGTTGAAGAGTACTTTGCGAACTACATTGTGAATGATAGTTTAGGGATCATCGCGAATGCTCATACCGCCTTTGCGGATAAGGAACCACTCAAGGCGTTTAGTGACCCATGCATTGAGCTTGCAAAGAAGTTTTCAACTGCGGTAGATTTCCCAAAAACTGGTGTTGCAGCTGTGATACCGCAACATCTTTACGTGAAAGAGTATCCTGATTTCATGGAGAAACCGGATAAGCCAACATATGAGTCGAAGAACGTGATTGGTAAGCTTTTTAGAGAGGTAAAAGAGCGAGCTCCACCGTTGATCTCGATCAAATCATTCACGCTTGATGTGGCCTCAAAGTCTTATGATAAAGACATGGAAGTTGACGGATTTGAGGAGTATGTTGATGAAGCTTTCTACCAGAAGGCGAATTATGATTTCAAGTTAGGTAATTTGATGGATTACTATGGGATTAAGACTGAGGCTGAGATTCTTAGTGGTGGTATAATGAGGATGTCAAAGTCATTCACCAAGAGACGAGATGCAGAATCGATTGGAAGAGCGGTTCGGGCGTTGAGGAAAGAAACTTTGTCGTTGTTCAATGCTTCTGAAGAAGAAGAAAATGAGTCAGCAAAGGCTTCGGCTTGGTATCATGTAACGTACCACTCAAGTTACTGGGGACTTTATAATGAGGGTTTGAATCGTGACCATTTCTTAAGTTTTGCGTGGTGCGTTTATGATAAGCTTGTGAGGATCAAGAAGACCAATCTTGGGAGGCGTCAGCGGCAGGAGACGCTCGAGCGGTTAGACCATGTTCTGCGTTTCGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009615 GO:0009719 GO:0009725 GO:0009751 GO:0009892 GO:0009987 GO:0010025 GO:0010033 GO:0010166 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0043331 GO:0044237 GO:0044238 GO:0046483 GO:0046677 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060147 GO:0060148 GO:0060255 GO:0060968 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:1901360 GO:1901568 GO:1901570 GO:1901576 GO:1901698 GO:1901699 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RdRP

Protein Analysis

1107

Amino Acids

126.21

Weight (kDa)

7.92

Isoelectric Point (pI)

38.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_RdRP1_2	PF26250	4 - 85	1.4e-37	RdRP1/2, RRM domain
PH_RDR2	PF24823	103 - 246	1e-35	RDR2 PH-like domain
RDR6_2nd	PF24577	142 - 228	6.8e-06	RNA-dependent RNA polymerase 6 second domain
RdRP_helical	PF26252	268 - 355	8.9e-27	RNA dependent RNA polymerase, helical domain
RdRP	PF05183	372 - 931	5.4e-199	RNA dependent RNA polymerase
RdRP_head	PF26253	952 - 1102	3.2e-55	RdRP, head domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14790
fragaria_vesca	FvH4_4g33391 FvH4_4g33391 FvH4_4g33391 FvH4_4g33391 FvH4_4g33391 FvH4_4g33391
malus_domestica	MD13G1019300.v1.1 MD13G1041300.v1.1 MD16G1017200.v1.1
prunus_persica	Prupe.1G334600_v2.0.a1 Prupe.1G334600_v2.0.a1
pyrus_communis	pycom13g01640 pycom13g03560 pycom13g03580 pycom16g01590
rosa_chinensis	RchiOBHm_Chr4g0442681 RchiOBHm_Chr4g0442701
rosa_laevigata	RLG00000005990 RLG00000005992
rosa_multiflora	Rmu_ssc0000204.1_g000024 Rmu_ssc0000204.1_g000026
rosa_roxburghii	Rroxscaffold_5G00383490 Rroxscaffold_5G00383510
rosa_rugosa	Rorug04G0342200 Rorug04G0342300
rosa_samantha	Rh4AG394700 Rh4AG394900 Rh4BG407600 Rh4CG423000 Rh4CG423600 Rh4DG401700 Rh4DG401900
rosa_wichuraiana	Rw4G034110 Rw4G034130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1710, 3180
AccB7I	CCANNNNNTGG	1 cut(s)	2672
AccBSI	CCGCTC	2 cut(s)	3056, 3295
AccI	GTMKAC	1 cut(s)	1865
AccII	CGCG	5 cut(s)	878, 1020, 1107, 1320, 2567
AcsI	RAATTY	4 cut(s)	715, 1631, 1775, 2068
AcuI	CTGAAG	2 cut(s)	2048, 3123
AcyI	GRCGYC	1 cut(s)	3271
AfaI	GTAC	4 cut(s)	1028, 1823, 2525, 3155
AfiI	CCNNNNNNNGG	7 cut(s)	125, 821, 1381, 2350, 2351, 2672, 3264
AflII	CTTAAG	1 cut(s)	3208
AflIII	ACRYGT	1 cut(s)	876
AjiI	CACGTC	1 cut(s)	2281
AjnI	CCWGG	3 cut(s)	820, 1981, 2272
AjuI	GAANNNNNNNTTGG	2 cut(s)	2362, 2394
AleI	CACNNNNGTG	1 cut(s)	866
AloI	GAACNNNNNNTCC	2 cut(s)	3042, 3074
Alw21I	GWGCWC	5 cut(s)	358, 529, 738, 949, 2806
AlwNI	CAGNNNCTG	1 cut(s)	92
Ama87I	CYCGRG	1 cut(s)	3290
AoxI	GGCC	4 cut(s)	890, 2210, 2360, 2844
ApeKI	GCWGC	4 cut(s)	197, 1427, 1487, 2681
ApoI	RAATTY	4 cut(s)	715, 1631, 1775, 2068
ArsI	GACNNNNNNTTYG	6 cut(s)	1736, 1768, 1874, 1906, 1930, 1962
Asp700I	GAANNNNTTC	3 cut(s)	1239, 1557, 2433
AspLEI	GCGC	1 cut(s)	47
AspS9I	GGNCC	4 cut(s)	131, 890, 1142, 2237
AsuC2I	CCSGG	2 cut(s)	889, 2214
AsuHPI	GGTGA	7 cut(s)	529, 971, 1162, 1463, 2224, 2288, 3013
AsuII	TTCGAA	1 cut(s)	1779
AvaI	CYCGRG	1 cut(s)	3290
AvaII	GGWCC	3 cut(s)	131, 1142, 2237
AxyI	CCTNAGG	1 cut(s)	1205
BanII	GRGCYC	2 cut(s)	949, 2806
BauI	CACGAG	1 cut(s)	1958
BbsI	GAAGAC	2 cut(s)	14, 3260
Bbv12I	GWGCWC	5 cut(s)	358, 529, 738, 949, 2806
BbvI	GCAGC	4 cut(s)	209, 1439, 1474, 2693
BcgI	CGANNNNNNTGC	2 cut(s)	3114, 3148
BciT130I	CCWGG	3 cut(s)	822, 1983, 2274
BciVI	GTATCC	1 cut(s)	2727
BclI	TGATCA	1 cut(s)	183
BcnI	CCSGG	2 cut(s)	889, 2214
BfaI	CTAG	3 cut(s)	771, 1638, 2150
BfmI	CTRYAG	1 cut(s)	624
BfrI	CTTAAG	1 cut(s)	3208
BfuI	GTATCC	1 cut(s)	2727
BglI	GCCNNNNNGGC	1 cut(s)	2218
BglII	AGATCT	4 cut(s)	221, 843, 1228, 2132
BisI	GCNGC	6 cut(s)	195, 198, 1428, 1488, 2682, 3278
BlsI	GCNGC	6 cut(s)	196, 199, 1429, 1489, 2683, 3279
BmcAI	AGTACT	1 cut(s)	2525
Bme1390I	CCNGG	5 cut(s)	822, 889, 1983, 2214, 2274
Bme18I	GGWCC	3 cut(s)	131, 1142, 2237
BmeT110I	CYCGRG	1 cut(s)	3290
BmgBI	CACGTC	1 cut(s)	2281
BmgT120I	GGNCC	4 cut(s)	131, 890, 1142, 2237
BmiI	GGNNCC	3 cut(s)	1980, 2436, 2598
BmrFI	CCNGG	5 cut(s)	822, 889, 1983, 2214, 2274
BmrI	ACTGGG	1 cut(s)	3178
BmsI	GCATC	5 cut(s)	2049, 2087, 2135, 2278, 3025
BmuI	ACTGGG	1 cut(s)	3178
BpiI	GAAGAC	2 cut(s)	14, 3260
BpmI	CTGGAG	3 cut(s)	804, 1965, 2189
Bpu14I	TTCGAA	1 cut(s)	1779
BpuEI	CTTGAG	7 cut(s)	215, 342, 458, 1988, 2377, 2588, 3145
BpuMI	CCSGG	2 cut(s)	889, 2214
Bsa29I	ATCGAT	1 cut(s)	3044
BsaAI	YACGTR	1 cut(s)	2707
BsaBI	GATNNNNATC	2 cut(s)	1227, 2819
BsaHI	GRCGYC	1 cut(s)	3271
BsaI	GGTCTC	2 cut(s)	1216, 2150
BsaJI	CCNNGG	4 cut(s)	821, 982, 1248, 1982
BsaWI	WCCGGW	3 cut(s)	1144, 2234, 2737
Bsc4I	CCNNNNNNNGG	7 cut(s)	125, 821, 1381, 2350, 2351, 2672, 3264
Bse1I	ACTGG	5 cut(s)	85, 1375, 2172, 2677, 3173
Bse21I	CCTNAGG	1 cut(s)	1205
Bse3DI	GCAATG	1 cut(s)	617
Bse8I	GATNNNNATC	2 cut(s)	1227, 2819
BseBI	CCWGG	3 cut(s)	822, 1983, 2274
BseCI	ATCGAT	1 cut(s)	3044
BseDI	CCNNGG	4 cut(s)	821, 982, 1248, 1982
BseGI	GGATG	8 cut(s)	320, 393, 1404, 1452, 1942, 2150, 2269, 3012
BseJI	GATNNNNATC	2 cut(s)	1227, 2819
BseLI	CCNNNNNNNGG	7 cut(s)	125, 821, 1381, 2350, 2351, 2672, 3264
BseMI	GCAATG	1 cut(s)	617
BseMII	CTCAG	5 cut(s)	156, 1219, 1748, 2964, 2970
BseNI	ACTGG	5 cut(s)	85, 1375, 2172, 2677, 3173
BseRI	GAGGAG	2 cut(s)	807, 2903
BseXI	GCAGC	4 cut(s)	209, 1439, 1474, 2693
BseYI	CCCAGC	1 cut(s)	2308
BsgI	GTGCAG	2 cut(s)	890, 2210
Bsh1236I	CGCG	5 cut(s)	878, 1020, 1107, 1320, 2567
BshFI	GGCC	4 cut(s)	892, 2212, 2362, 2846
BshVI	ATCGAT	1 cut(s)	3044
BsiHKAI	GWGCWC	5 cut(s)	358, 529, 738, 949, 2806
BsiHKCI	CYCGRG	1 cut(s)	3290
BsiSI	CCGG	5 cut(s)	888, 1145, 2213, 2235, 2738
BslFI	GGGAC	3 cut(s)	1600, 2291, 3186
BslI	CCNNNNNNNGG	7 cut(s)	125, 821, 1381, 2350, 2351, 2672, 3264
BsmBI	CGTCTC	3 cut(s)	1928, 3022, 3278
BsmFI	GGGAC	3 cut(s)	1600, 2291, 3186
BsmI	GAATGC	2 cut(s)	475, 2575
BsnI	GGCC	4 cut(s)	892, 2212, 2362, 2846
Bso31I	GGTCTC	2 cut(s)	1216, 2150
BsoBI	CYCGRG	1 cut(s)	3290
Bsp119I	TTCGAA	1 cut(s)	1779
Bsp1286I	GDGCHC	5 cut(s)	358, 529, 738, 949, 2806
Bsp19I	CCATGG	1 cut(s)	1248
Bsp68I	TCGCGA	3 cut(s)	1020, 1320, 2567
BspANI	GGCC	4 cut(s)	892, 2212, 2362, 2846
BspCNI	CTCAG	5 cut(s)	157, 1218, 1749, 2965, 2971
BspDI	ATCGAT	1 cut(s)	3044
BspFNI	CGCG	5 cut(s)	878, 1020, 1107, 1320, 2567
BspHI	TCATGA	1 cut(s)	2494
BspLI	GGNNCC	3 cut(s)	1980, 2436, 2598
BspQI	GCTCTTC	3 cut(s)	1273, 1519, 3046
BspT104I	TTCGAA	1 cut(s)	1779
BspTI	CTTAAG	1 cut(s)	3208
BspTNI	GGTCTC	2 cut(s)	1216, 2150
BsrBI	CCGCTC	2 cut(s)	3056, 3295
BsrDI	GCAATG	1 cut(s)	617
BsrI	ACTGG	5 cut(s)	85, 1375, 2172, 2677, 3173
BssECI	CCNNGG	4 cut(s)	821, 982, 1248, 1982
BssNI	GRCGYC	1 cut(s)	3271
BssSI	CACGAG	1 cut(s)	1958
BssT1I	CCWWGG	2 cut(s)	982, 1248
Bst2BI	CACGAG	1 cut(s)	1958
Bst2UI	CCWGG	3 cut(s)	822, 1983, 2274
Bst4CI	ACNGT	7 cut(s)	94, 593, 962, 1062, 1752, 1886, 2811
Bst6I	CTCTTC	5 cut(s)	1273, 1519, 1757, 2514, 3046
BstACI	GRCGYC	1 cut(s)	3271
BstAFI	CTTAAG	1 cut(s)	3208
BstBAI	YACGTR	1 cut(s)	2707
BstBI	TTCGAA	1 cut(s)	1779
BstC8I	GCNNGC	6 cut(s)	745, 894, 1005, 2267, 2634, 2802
BstDEI	CTNAG	8 cut(s)	165, 330, 1205, 1757, 2082, 2973, 2979, 2987
BstDSI	CCRYGG	1 cut(s)	1248
BstENI	CCTNNNNNAGG	1 cut(s)	819
BstF5I	GGATG	8 cut(s)	320, 393, 1404, 1452, 1942, 2150, 2269, 3012
BstFNI	CGCG	5 cut(s)	878, 1020, 1107, 1320, 2567
BstHHI	GCGC	1 cut(s)	47
BstNI	CCWGG	3 cut(s)	822, 1983, 2274
BstSCI	CCNGG	5 cut(s)	820, 887, 1981, 2212, 2272
BstSFI	CTRYAG	1 cut(s)	624
BstUI	CGCG	5 cut(s)	878, 1020, 1107, 1320, 2567
BstV1I	GCAGC	4 cut(s)	209, 1439, 1474, 2693
BstV2I	GAAGAC	2 cut(s)	14, 3260
BstX2I	RGATCY	6 cut(s)	221, 843, 1228, 1252, 2132, 2200
BstXI	CCANNNNNNTGG	1 cut(s)	2167
BstYI	RGATCY	6 cut(s)	221, 843, 1228, 1252, 2132, 2200
Bsu15I	ATCGAT	1 cut(s)	3044
Bsu36I	CCTNAGG	1 cut(s)	1205
BsuI	GTATCC	1 cut(s)	2727
BsuRI	GGCC	4 cut(s)	892, 2212, 2362, 2846
BsuTUI	ATCGAT	1 cut(s)	3044
BtgI	CCRYGG	1 cut(s)	1248
BtgZI	GCGATG	3 cut(s)	1035, 1335, 2548
BtrI	CACGTC	1 cut(s)	2281
BtsCI	GGATG	8 cut(s)	320, 393, 1404, 1452, 1942, 2150, 2269, 3012
BtsI	GCAGTG	1 cut(s)	189
BtsIMutI	CAGTG	8 cut(s)	78, 90, 189, 598, 958, 1058, 1891, 2165
BtuMI	TCGCGA	3 cut(s)	1020, 1320, 2567
Cac8I	GCNNGC	6 cut(s)	745, 894, 1005, 2267, 2634, 2802
CaiI	CAGNNNCTG	1 cut(s)	92
CciI	TCATGA	1 cut(s)	2494
CfoI	GCGC	1 cut(s)	47
Cfr13I	GGNCC	4 cut(s)	131, 890, 1142, 2237
ClaI	ATCGAT	1 cut(s)	3044
CseI	GACGC	4 cut(s)	1937, 2045, 3260, 3295
Csp6I	GTAC	4 cut(s)	1027, 1822, 2524, 3154
CviAII	CATG	9 cut(s)	1249, 2206, 2262, 2495, 2622, 2728, 2869, 3146, 3305
CviQI	GTAC	4 cut(s)	1027, 1822, 2524, 3154
DdeI	CTNAG	8 cut(s)	165, 330, 1205, 1757, 2082, 2973, 2979, 2987
DraI	TTTAAA	3 cut(s)	300, 853, 2316
Eam1104I	CTCTTC	5 cut(s)	1273, 1519, 1757, 2514, 3046
EarI	CTCTTC	5 cut(s)	1273, 1519, 1757, 2514, 3046
EciI	GGCGGA	1 cut(s)	2427
Ecl136II	GAGCTC	2 cut(s)	947, 2804
Eco130I	CCWWGG	2 cut(s)	982, 1248
Eco24I	GRGCYC	2 cut(s)	949, 2806
Eco31I	GGTCTC	2 cut(s)	1216, 2150
Eco32I	GATATC	2 cut(s)	1041, 1623
Eco47I	GGWCC	3 cut(s)	131, 1142, 2237
Eco53kI	GAGCTC	2 cut(s)	947, 2804
Eco57I	CTGAAG	2 cut(s)	2048, 3123
Eco81I	CCTNAGG	1 cut(s)	1205
Eco88I	CYCGRG	1 cut(s)	3290
EcoICRI	GAGCTC	2 cut(s)	947, 2804
EcoNI	CCTNNNNNAGG	1 cut(s)	819
EcoRII	CCWGG	3 cut(s)	820, 1981, 2272
EcoRV	GATATC	2 cut(s)	1041, 1623
EcoT14I	CCWWGG	2 cut(s)	982, 1248
EcoT22I	ATGCAT	1 cut(s)	2627
EcoT38I	GRGCYC	2 cut(s)	949, 2806
ErhI	CCWWGG	2 cut(s)	982, 1248
Esp3I	CGTCTC	3 cut(s)	1928, 3022, 3278
FaeI	CATG	9 cut(s)	1252, 2209, 2265, 2498, 2625, 2731, 2872, 3149, 3308
FalI	AAGNNNNNCTT	4 cut(s)	293, 325, 1038, 1070
FaqI	GGGAC	3 cut(s)	1600, 2291, 3186
FatI	CATG	9 cut(s)	1248, 2205, 2261, 2494, 2621, 2727, 2868, 3145, 3304
FauI	CCCGC	2 cut(s)	1374, 2352
FauNDI	CATATG	2 cut(s)	2322, 2752
FbaI	TGATCA	1 cut(s)	183
FblI	GTMKAC	1 cut(s)	1865
Fnu4HI	GCNGC	6 cut(s)	195, 198, 1428, 1488, 2682, 3278
FokI	GGATG	8 cut(s)	327, 400, 1411, 1459, 1929, 2157, 2256, 3019
FriOI	GRGCYC	2 cut(s)	949, 2806
Fsp4HI	GCNGC	6 cut(s)	195, 198, 1428, 1488, 2682, 3278
FspBI	CTAG	3 cut(s)	771, 1638, 2150
GlaI	GCGC	1 cut(s)	46
GluI	GCNGC	6 cut(s)	195, 198, 1428, 1488, 2682, 3278
GsaI	CCCAGC	1 cut(s)	2312
GsuI	CTGGAG	3 cut(s)	804, 1965, 2189
HaeIII	GGCC	4 cut(s)	892, 2212, 2362, 2846
HapII	CCGG	5 cut(s)	888, 1145, 2213, 2235, 2738
HgaI	GACGC	4 cut(s)	1937, 2045, 3260, 3295
HhaI	GCGC	1 cut(s)	47
Hin1I	GRCGYC	1 cut(s)	3271
Hin1II	CATG	9 cut(s)	1252, 2209, 2265, 2498, 2625, 2731, 2872, 3149, 3308
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HincII	GTYRAC	1 cut(s)	2878
HindII	GTYRAC	1 cut(s)	2878
HindIII	AAGCTT	5 cut(s)	1052, 1796, 2777, 2904, 3236
HpaII	CCGG	5 cut(s)	888, 1145, 2213, 2235, 2738
HphI	GGTGA	7 cut(s)	529, 971, 1162, 1463, 2224, 2288, 3013
Hpy166II	GTNNAC	4 cut(s)	97, 1866, 2329, 2878
Hpy8I	GTNNAC	4 cut(s)	97, 1866, 2329, 2878
Hpy99I	CGWCG	1 cut(s)	1931
HpyAV	CCTTC	2 cut(s)	2211, 2911
HpyCH4III	ACNGT	7 cut(s)	94, 593, 962, 1062, 1752, 1886, 2811
HpyCH4IV	ACGT	6 cut(s)	205, 2280, 2447, 2706, 2766, 3152
HpyF3I	CTNAG	8 cut(s)	165, 330, 1205, 1757, 2082, 2973, 2979, 2987
HpySE526I	ACGT	6 cut(s)	205, 2280, 2447, 2706, 2766, 3152
Hsp92I	GRCGYC	1 cut(s)	3271
Hsp92II	CATG	9 cut(s)	1252, 2209, 2265, 2498, 2625, 2731, 2872, 3149, 3308
HspAI	GCGC	1 cut(s)	45
Ksp22I	TGATCA	1 cut(s)	183
LguI	GCTCTTC	3 cut(s)	1273, 1519, 3046
LmnI	GCTCC	4 cut(s)	532, 1815, 1984, 2809
Lsp1109I	GCAGC	4 cut(s)	209, 1439, 1474, 2693
LweI	GCATC	5 cut(s)	2049, 2087, 2135, 2278, 3025
MaeI	CTAG	3 cut(s)	771, 1638, 2150
MaeII	ACGT	6 cut(s)	205, 2280, 2447, 2706, 2766, 3152
MaeIII	GTNAC	8 cut(s)	1114, 1876, 2276, 2500, 2615, 3148, 3164, 3197
MbiI	CCGCTC	2 cut(s)	3056, 3295
MfeI	CAATTG	1 cut(s)	2505
MflI	RGATCY	6 cut(s)	221, 843, 1228, 1252, 2132, 2200
MhlI	GDGCHC	5 cut(s)	358, 529, 738, 949, 2806
MluI	ACGCGT	1 cut(s)	876
MlyI	GAGTC	6 cut(s)	69, 147, 1137, 1933, 2765, 3128
MmeI	TCCRAC	1 cut(s)	2070
Mph1103I	ATGCAT	1 cut(s)	2627
MroXI	GAANNNNTTC	3 cut(s)	1239, 1557, 2433
MslI	CAYNNNNRTG	4 cut(s)	693, 866, 2274, 2370
MspA1I	CMGCKG	3 cut(s)	1628, 2684, 3277
MspCI	CTTAAG	1 cut(s)	3208
MspI	CCGG	5 cut(s)	888, 1145, 2213, 2235, 2738
MspR9I	CCNGG	5 cut(s)	822, 889, 1983, 2214, 2274
MssI	GTTTAAAC	1 cut(s)	853
MunI	CAATTG	1 cut(s)	2505
Mva1269I	GAATGC	2 cut(s)	475, 2575
MvaI	CCWGG	3 cut(s)	822, 1983, 2274
MvnI	CGCG	5 cut(s)	878, 1020, 1107, 1320, 2567
NciI	CCSGG	2 cut(s)	889, 2214
NcoI	CCATGG	1 cut(s)	1248
NdeI	CATATG	2 cut(s)	2322, 2752
NlaIII	CATG	9 cut(s)	1252, 2209, 2265, 2498, 2625, 2731, 2872, 3149, 3308
NlaIV	GGNNCC	3 cut(s)	1980, 2436, 2598
NmuCI	GTSAC	4 cut(s)	2276, 2500, 2615, 3197
NruI	TCGCGA	3 cut(s)	1020, 1320, 2567
NsiI	ATGCAT	1 cut(s)	2627
NspV	TTCGAA	1 cut(s)	1779
OliI	CACNNNNGTG	1 cut(s)	866
PaeR7I	CTCGAG	1 cut(s)	3290
PagI	TCATGA	1 cut(s)	2494
PciSI	GCTCTTC	3 cut(s)	1273, 1519, 3046
PcsI	WCGNNNNNNNCGW	1 cut(s)	1171
PctI	GAATGC	2 cut(s)	475, 2575
PdmI	GAANNNNTTC	3 cut(s)	1239, 1557, 2433
PfeI	GAWTC	9 cut(s)	27, 511, 761, 1558, 1781, 2223, 2983, 3041, 3193
PflMI	CCANNNNNTGG	1 cut(s)	2672
PkrI	GCNGC	6 cut(s)	196, 199, 1429, 1489, 2683, 3279
PleI	GAGTC	6 cut(s)	69, 146, 1136, 1933, 2764, 3127
PmeI	GTTTAAAC	1 cut(s)	853
PpsI	GAGTC	6 cut(s)	69, 146, 1136, 1933, 2764, 3127
Ppu21I	YACGTR	1 cut(s)	2707
PsiI	TTATAA	2 cut(s)	1710, 3180
Psp124BI	GAGCTC	2 cut(s)	949, 2806
Psp6I	CCWGG	3 cut(s)	820, 1981, 2272
PspFI	CCCAGC	1 cut(s)	2308
PspGI	CCWGG	3 cut(s)	820, 1981, 2272
PspN4I	GGNNCC	3 cut(s)	1980, 2436, 2598
PspPI	GGNCC	4 cut(s)	131, 890, 1142, 2237
PspXI	VCTCGAGB	1 cut(s)	3290
PstNI	CAGNNNCTG	1 cut(s)	92
PsuI	RGATCY	6 cut(s)	221, 843, 1228, 1252, 2132, 2200
PvuII	CAGCTG	2 cut(s)	1628, 2684
RruI	TCGCGA	3 cut(s)	1020, 1320, 2567
RsaI	GTAC	4 cut(s)	1028, 1823, 2525, 3155
RsaNI	GTAC	4 cut(s)	1027, 1822, 2524, 3154
RseI	CAYNNNNRTG	4 cut(s)	693, 866, 2274, 2370
SacI	GAGCTC	2 cut(s)	949, 2806
SapI	GCTCTTC	3 cut(s)	1273, 1519, 3046
SatI	GCNGC	6 cut(s)	195, 198, 1428, 1488, 2682, 3278
Sau96I	GGNCC	4 cut(s)	131, 890, 1142, 2237
ScaI	AGTACT	1 cut(s)	2525
SchI	GAGTC	6 cut(s)	69, 147, 1137, 1933, 2765, 3128
ScrFI	CCNGG	5 cut(s)	822, 889, 1983, 2214, 2274
SduI	GDGCHC	5 cut(s)	358, 529, 738, 949, 2806
SfaNI	GCATC	5 cut(s)	2049, 2087, 2135, 2278, 3025
SfcI	CTRYAG	1 cut(s)	624
Sfr274I	CTCGAG	1 cut(s)	3290
SfuI	TTCGAA	1 cut(s)	1779
SinI	GGWCC	3 cut(s)	131, 1142, 2237
SlaI	CTCGAG	1 cut(s)	3290
SmiMI	CAYNNNNRTG	4 cut(s)	693, 866, 2274, 2370
SmlI	CTYRAG	9 cut(s)	230, 357, 437, 2003, 2356, 2603, 3160, 3208, 3290
SmoI	CTYRAG	9 cut(s)	230, 357, 437, 2003, 2356, 2603, 3160, 3208, 3290
SspI	AATATT	2 cut(s)	537, 1999
SspMI	CTAG	3 cut(s)	771, 1638, 2150
SstI	GAGCTC	2 cut(s)	949, 2806
StyD4I	CCNGG	5 cut(s)	820, 887, 1981, 2212, 2272
StyI	CCWWGG	2 cut(s)	982, 1248
TaaI	ACNGT	7 cut(s)	94, 593, 962, 1062, 1752, 1886, 2811
TaiI	ACGT	6 cut(s)	208, 2283, 2450, 2709, 2769, 3155
TatI	WGTACW	2 cut(s)	1026, 2523
TauI	GCSGC	2 cut(s)	197, 3280
TfiI	GAWTC	9 cut(s)	27, 511, 761, 1558, 1781, 2223, 2983, 3041, 3193
TscAI	CASTG	8 cut(s)	85, 97, 196, 598, 965, 1065, 1891, 2172
TseFI	GTSAC	4 cut(s)	2276, 2500, 2615, 3197
TseI	GCWGC	4 cut(s)	197, 1427, 1487, 2681
Tsp45I	GTSAC	4 cut(s)	2276, 2500, 2615, 3197
TspGWI	ACGGA	4 cut(s)	1685, 1895, 2113, 2895
TspRI	CASTG	8 cut(s)	85, 97, 196, 598, 965, 1065, 1891, 2172
Van91I	CCANNNNNTGG	1 cut(s)	2672
Vha464I	CTTAAG	1 cut(s)	3208
VpaK11BI	GGWCC	3 cut(s)	131, 1142, 2237
XagI	CCTNNNNNAGG	1 cut(s)	819
XapI	RAATTY	4 cut(s)	715, 1631, 1775, 2068
XhoI	CTCGAG	1 cut(s)	3290
XmiI	GTMKAC	1 cut(s)	1865
XmnI	GAANNNNTTC	3 cut(s)	1239, 1557, 2433
XspI	CTAG	3 cut(s)	771, 1638, 2150
ZrmI	AGTACT	1 cut(s)	2525
Zsp2I	ATGCAT	1 cut(s)	2627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.