Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003605

Physical Location & Seq

Genomic Coordinates Reverse (-)

63078909 .. 63083617

Gene Structure 4709 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00383510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3015 bp

ATGGAGAAAACAATAAAATTACATGGATTCCCTTCAGGTGAATCTGCCGAAAAAATTAAGTTTCAGTCCACCAGTCAGGCTGAGCTTATCACCTCTTTGGCCAAAGCTAGGCTGTGGTATGGGAGATCCTATTTGACATTTTATGCAGCGGACCATGATATTGTACCAAAGCCAAGAACTGTAATGCATAGCTTGCAAAATTTAGAATTGCATGTTGGCTGCCAGGTTGCAAATGATAAGTTGTCTGGTTTTTGGAGAACGGCTGAAGTTTCAGTGGACTTTGGGACTGGAACGCGGAAATTCCAATTTCGGCTGTTATATCGTCAGAAGTTATATAGACTTCAGCTCTCTTATGAGAACATCTGGCAAAGTGAGTTGCATTGTCCACGTGGTCGCACTGCAAAATATCTTGTCATTCAGTTATATGGAGCTCCTCGCATCTACCAACAAGAAGAAGCATGTTCTCCTGGAAATGTATATGATGACCCTCTTATGAACTACTTTAGGGATGTCCCTGATGACCAATGGGTTCGGACTACTGATTTCACTCCACGAAGCTGTATTGGGGAGTCATCTTCATTATGTTTAGAGCTTCCTTCTGGTCGCCAACTTCCTGATTTTGAAGAAAATTTTGCTTATTATAAGGAGAATGATGGGCAATTTATCTTGGAGAAAGGCTCAACTTTCTCTTGCAACCAAGATCTGGTCCCTATTGTTGGTTCTCCTGCAGGGGTTGATTTGCCATATGATATCTTGTTTAAAATAAACTCGCTGGTTCAAATGGGTTGTCTGTCAGGGCCGACACTTGATAACAGGTTTTATAGGCTGGTGGATCCACGAAGAATAACTCGTTCCTGTATAGAGTATGCCCTAGATAAATTATCTAATTTGAAAAAGAGCTGTTATGAACCTGCAGTGTGGCTTCATGAGGAATATCAGAAGTACCTGACATCAAAGAAACCTCCAAAGCCGGCACTTATCTCCTTAGATTCTGGTTTGGTATATGTACGCAGGGTTCAAATAACACCATCTAAAGTGTATTTTTCTGGTCCTGAGGTCAATGTCTCAAATCGCATACTACGCCAGTATTCCAGTGATATCGATAACTTTCTTCGTGTTTCATTTGTTGATGAGGAGATGGAAAATCTCTATTCAACAGATTTGTCCCCCGTACATCTACTAGAAAACTCGCATCTACAACAGAATTCTTTCTATTCTCAGAAACGGCATAATAAGAGCAGGGATGGGGGATTTTCGCAAGATAAGAAATGTGGCAAAGTATGCTGCCAGATTGGGTGTGGCATCGAATATATGTTCTCTGATGGGATTGGGAAAATATCAGCTGATTTTGCAAGGAGAGTAGCCTTCAAATGTGGCTATAAAGCGTTCACACCATCTGCATTTCAAATTCGATATGGTGGTTACAAAGGTGTTGTCGCTGTTGATCCAACCTCGTCAATGAAATTATCACTGAGAAAGAGCATGTCTAAGTATGATTCTGAAAACACAAAGCTAGATGTTCTAGCATGTAGCAAGTTTCAGTCTTGTTTTTTGAATCGTCAGGTGATAACTCTTCTGTCTACACTTGGAGTTCAAGATCATGTTTTCTTGAAAAAGCAAAGAGCAGCTGTACAACAACTTAATGCCATATTGACTGACCCATTAAAAGCAGGGGAGGCTCTTGATTTGATGTCTGCAGGTGAGAGTACAAACATCCTCAAGGAACTGCTGATGTGTGGTTATAAACCTGATGTTGAACCATTCCTTTCAATGATGCTCCAAACATTTCGGGCATCAAAGTTGTTGGAATTGAGGACCAAAACAAGAATCTTTATCCCAGACGGAAGACTAATGATGGGATGTCTAGACGAAACAAGAACCTTGGAATATGGGCAGGTGTTTGTGCAAATCTCTGGATACAGACAAAGGCAGTTATTTGATGATTCATTCATGCATAGTGGAAGCTCATCAGGCAACTGTTTTGTTATTGAGGGAAAGGTGGTTGTTGCAAAGAACCCATGTTTACACCCTGGTGATGTGCGTGTTTTAAGGGCTGTGAATGTGCCGGAGTTACTCCATATGGTGGACTGTGTGGTATTTCCACAAAAAGGACCAAGGCCTCATCCAAATGAATGTTCTGGAAGTGATCTTGATGGAGATATTTACTTTGTTTGCTGGGACCCCGAGTTGATTCCTCGCAAGCAAATCCAACCTATGGATTATACCCCAGCACCACCTTTAGAGATGGATCATGATGTCACAATTGAGGAAGTAGAAGGGTACTTTGTGAATTACATACTCAATGATAGTTTGGGGATAATTGCCAATGCCCACACTGTTTTTGCTGACAGAGAGCGTGGTAAAGCAATGAGCCGTCCGTGCATAGAGCTCGCGAAGCTACATTCAAAAGCTGTAGACTTTCCAAAAACTGGCGTGCCAGCTGTGATACCACCAGAACTGTATGTCAAGGAATATCCAGATTTCATGGAGAAGACCGACAAAAGCACCTATCGTTCAAGCAATGTGATCGGACAGCTATTTCGTGAGGTGAAGGACATTGCACCCCTTGACAGCTGTATTACATCCTTCACTCTTCAAGTGGCGACAAAATCCTATGACCCTGACATGGAGGTTGATGGCTTTGAGGATTACCTTGGAGATGCTGTCTATTACAAAGGCAATTATGATTACAAATTGGGAAACCTGCGGGATGCAGATGCTATAAACATGGCTGTGAAGTCATTGAGGAAGGAAGCTAGGGCCTGGTTCAATGAGAAAGGAACTGGAATAGATTCTGGCGATGATGTCTATGCAAAGGCCTCAGCTTGGTATTATGTCACATATCATCCCAAGTATTTTGGTTTGTACAATGAGGGAATGAAACGTGACCATTTTATCAGCTTTCCATGGTGTGTTTATGACAAGCTGGTTCACATAAAAAAGGACAAAGTAAGGCAAGCTCGGCGTATATCATCTCTAGAAAGTCAGTTGAGGTACGGCTTGCATTTGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009615 GO:0009719 GO:0009725 GO:0009751 GO:0009892 GO:0009987 GO:0010025 GO:0010033 GO:0010166 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0043331 GO:0044237 GO:0044238 GO:0046483 GO:0046677 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060147 GO:0060148 GO:0060255 GO:0060968 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:1901360 GO:1901568 GO:1901570 GO:1901576 GO:1901698 GO:1901699 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RdRP

Protein Analysis

1004

Amino Acids

114.37

Weight (kDa)

7.66

Isoelectric Point (pI)

41.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PH_RDR2	PF24823	70 - 221	4.7e-43	RDR2 PH-like domain
RdRP_helical	PF26252	242 - 320	4.9e-13	RNA dependent RNA polymerase, helical domain
RdRP	PF05183	341 - 386	4e-09	RNA dependent RNA polymerase
RdRP	PF05183	436 - 850	6.6e-149	RNA dependent RNA polymerase
RdRP_head	PF26253	904 - 988	1.1e-21	RdRP, head domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14790
fragaria_vesca	FvH4_4g33391 FvH4_4g33391 FvH4_4g33391 FvH4_4g33391 FvH4_4g33391 FvH4_4g33391
malus_domestica	MD13G1019300.v1.1 MD13G1041300.v1.1 MD16G1017200.v1.1
prunus_persica	Prupe.1G334600_v2.0.a1 Prupe.1G334600_v2.0.a1
pyrus_communis	pycom13g01640 pycom13g03560 pycom13g03580 pycom16g01590
rosa_chinensis	RchiOBHm_Chr4g0442681 RchiOBHm_Chr4g0442701
rosa_laevigata	RLG00000005990 RLG00000005992
rosa_multiflora	Rmu_ssc0000204.1_g000024 Rmu_ssc0000204.1_g000026
rosa_roxburghii	Rroxscaffold_5G00383490 Rroxscaffold_5G00383510
rosa_rugosa	Rorug04G0342200 Rorug04G0342300
rosa_samantha	Rh4AG394700 Rh4AG394900 Rh4BG407600 Rh4CG423000 Rh4CG423600 Rh4DG401700 Rh4DG401900
rosa_wichuraiana	Rw4G034110 Rw4G034130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	642, 1743
AarI	CACCTGC	2 cut(s)	1688, 1885
Acc36I	ACCTGC	4 cut(s)	919, 1688, 1885, 2712
AccB7I	CCANNNNNTGG	4 cut(s)	703, 2083, 2215, 2429
AccI	GTMKAC	2 cut(s)	1580, 2415
AccII	CGCG	2 cut(s)	295, 2393
AciI	CCGC	3 cut(s)	149, 295, 2707
AclWI	GGATC	5 cut(s)	120, 827, 840, 1439, 2256
AcoI	YGGCCR	1 cut(s)	99
AcsI	RAATTY	5 cut(s)	199, 299, 628, 1204, 1407
AcuI	CTGAAG	3 cut(s)	18, 285, 326
AcvI	CACGTG	1 cut(s)	389
AfaI	GTAC	9 cut(s)	165, 944, 1008, 1173, 1632, 1708, 2282, 2867, 2996
AfiI	CCNNNNNNNGG	9 cut(s)	108, 703, 716, 2083, 2108, 2215, 2429, 2626, 2826
AjnI	CCWGG	4 cut(s)	222, 466, 2029, 2762
AjuI	GAANNNNNNNTTGG	4 cut(s)	198, 230, 2119, 2151
AleI	CACNNNNGTG	1 cut(s)	2031
Alw21I	GWGCWC	2 cut(s)	433, 2391
Alw26I	GTCTC	1 cut(s)	1069
AlwI	GGATC	5 cut(s)	120, 827, 840, 1439, 2256
Ama87I	CYCGRG	1 cut(s)	2183
AoxI	GGCC	5 cut(s)	99, 797, 2117, 2760, 2817
ApeKI	GCWGC	4 cut(s)	146, 219, 1284, 1625
ApoI	RAATTY	5 cut(s)	199, 299, 628, 1204, 1407
ArsI	GACNNNNNNTTYG	6 cut(s)	772, 804, 1419, 1451, 2523, 2555
Asp700I	GAANNNNTTC	2 cut(s)	1208, 2791
AspS9I	GGNCC	8 cut(s)	151, 706, 797, 1049, 1815, 2111, 2179, 2760
AsuHPI	GGTGA	6 cut(s)	50, 82, 1576, 1712, 2045, 2560
AvaI	CYCGRG	1 cut(s)	2183
AvaII	GGWCC	6 cut(s)	151, 706, 1049, 1815, 2111, 2179
AxyI	CCTNAGG	1 cut(s)	1053
BalI	TGGCCA	1 cut(s)	101
BamHI	GGATCC	1 cut(s)	832
BanII	GRGCYC	2 cut(s)	433, 2391
BbrPI	CACGTG	1 cut(s)	389
BbsI	GAAGAC	2 cut(s)	1852, 2498
Bbv12I	GWGCWC	2 cut(s)	433, 2391
BbvCI	CCTCAGC	1 cut(s)	2821
BbvI	GCAGC	4 cut(s)	158, 206, 1271, 1637
BceAI	ACGGC	4 cut(s)	276, 1241, 2358, 3013
BcgI	CGANNNNNNTGC	4 cut(s)	2371, 2405, 2509, 2543
BciT130I	CCWGG	4 cut(s)	224, 468, 2031, 2764
BciVI	GTATCC	1 cut(s)	1910
BcoDI	GTCTC	1 cut(s)	1069
BfaI	CTAG	8 cut(s)	108, 872, 1181, 1514, 1523, 1865, 2757, 2978
BfmI	CTRYAG	4 cut(s)	726, 912, 1695, 2412
BfuAI	ACCTGC	4 cut(s)	919, 1688, 1885, 2712
BfuI	GTATCC	1 cut(s)	1910
BglII	AGATCT	1 cut(s)	700
BisI	GCNGC	4 cut(s)	147, 220, 1285, 1626
BlpI	GCTNAGC	1 cut(s)	81
BlsI	GCNGC	4 cut(s)	148, 221, 1286, 1627
Bme1390I	CCNGG	4 cut(s)	224, 468, 2031, 2764
Bme18I	GGWCC	6 cut(s)	151, 706, 1049, 1815, 2111, 2179
BmeT110I	CYCGRG	1 cut(s)	2183
BmgT120I	GGNCC	8 cut(s)	151, 706, 797, 1049, 1815, 2111, 2179, 2760
BmiI	GGNNCC	4 cut(s)	708, 834, 2180, 2181
BmrFI	CCNGG	4 cut(s)	224, 468, 2031, 2764
BmsI	GCATC	8 cut(s)	447, 1201, 1311, 1764, 1802, 2650, 2701, 2707
BpiI	GAAGAC	2 cut(s)	1852, 2498
BplI	GAGNNNNNCTC	2 cut(s)	662, 694
Bpu10I	CCTNAGC	1 cut(s)	2821
Bpu1102I	GCTNAGC	1 cut(s)	81
BpuEI	CTTGAG	1 cut(s)	1703
Bsa29I	ATCGAT	1 cut(s)	1101
BsaAI	YACGTR	1 cut(s)	389
BsaJI	CCNNGG	5 cut(s)	1881, 2029, 2114, 2653, 2906
BsaXI	ACNNNNNCTCC	2 cut(s)	2649, 2679
Bsc4I	CCNNNNNNNGG	9 cut(s)	108, 703, 716, 2083, 2108, 2215, 2429, 2626, 2826
Bse118I	RCCGGY	1 cut(s)	970
Bse1I	ACTGG	6 cut(s)	72, 292, 1084, 1092, 2434, 2788
Bse21I	CCTNAGG	1 cut(s)	1053
Bse3DI	GCAATG	3 cut(s)	2373, 2527, 2556
BseBI	CCWGG	4 cut(s)	224, 468, 2031, 2764
BseCI	ATCGAT	1 cut(s)	1101
BseDI	CCNNGG	5 cut(s)	1881, 2029, 2114, 2653, 2906
BseGI	GGATG	8 cut(s)	514, 1249, 1713, 1865, 2122, 2582, 2716, 2845
BseLI	CCNNNNNNNGG	9 cut(s)	108, 703, 716, 2083, 2108, 2215, 2429, 2626, 2826
BseMI	GCAATG	3 cut(s)	2373, 2527, 2556
BseMII	CTCAG	5 cut(s)	72, 1044, 1232, 1463, 2835
BseNI	ACTGG	6 cut(s)	72, 292, 1084, 1092, 2434, 2788
BseRI	GAGGAG	2 cut(s)	423, 1148
BseXI	GCAGC	4 cut(s)	158, 206, 1271, 1637
BseYI	CCCAGC	2 cut(s)	2175, 2227
Bsh1236I	CGCG	2 cut(s)	295, 2393
BshFI	GGCC	5 cut(s)	101, 799, 2119, 2762, 2819
BshVI	ATCGAT	1 cut(s)	1101
BsiHKAI	GWGCWC	2 cut(s)	433, 2391
BsiHKCI	CYCGRG	1 cut(s)	2183
BsiSI	CCGG	2 cut(s)	971, 2066
BslFI	GGGAC	5 cut(s)	298, 497, 692, 1150, 2192
BslI	CCNNNNNNNGG	9 cut(s)	108, 703, 716, 2083, 2108, 2215, 2429, 2626, 2826
BsmAI	GTCTC	1 cut(s)	1069
BsmFI	GGGAC	5 cut(s)	298, 497, 692, 1150, 2192
BsnI	GGCC	5 cut(s)	101, 799, 2119, 2762, 2819
BsoBI	CYCGRG	1 cut(s)	2183
Bsp1286I	GDGCHC	2 cut(s)	433, 2391
Bsp1407I	TGTACA	2 cut(s)	1630, 2865
Bsp143I	GATC	8 cut(s)	125, 700, 832, 1444, 1597, 2146, 2248, 2526
Bsp1720I	GCTNAGC	1 cut(s)	81
Bsp19I	CCATGG	1 cut(s)	2906
Bsp68I	TCGCGA	1 cut(s)	2393
BspACI	CCGC	3 cut(s)	149, 295, 2707
BspANI	GGCC	5 cut(s)	101, 799, 2119, 2762, 2819
BspCNI	CTCAG	5 cut(s)	73, 1045, 1231, 1464, 2834
BspDI	ATCGAT	1 cut(s)	1101
BspFNI	CGCG	2 cut(s)	295, 2393
BspHI	TCATGA	2 cut(s)	925, 2251
BspLI	GGNNCC	4 cut(s)	708, 834, 2180, 2181
BspMAI	CTGCAG	3 cut(s)	730, 916, 1699
BspMI	ACCTGC	4 cut(s)	919, 1688, 1885, 2712
BspPI	GGATC	5 cut(s)	120, 827, 840, 1439, 2256
BsrDI	GCAATG	3 cut(s)	2373, 2527, 2556
BsrFI	RCCGGY	1 cut(s)	970
BsrGI	TGTACA	2 cut(s)	1630, 2865
BsrI	ACTGG	6 cut(s)	72, 292, 1084, 1092, 2434, 2788
BssAI	RCCGGY	1 cut(s)	970
BssECI	CCNNGG	5 cut(s)	1881, 2029, 2114, 2653, 2906
BssMI	GATC	8 cut(s)	125, 700, 832, 1444, 1597, 2146, 2248, 2526
BssT1I	CCWWGG	4 cut(s)	1881, 2114, 2653, 2906
Bst2UI	CCWGG	4 cut(s)	224, 468, 2031, 2764
Bst4CI	ACNGT	5 cut(s)	181, 1979, 2090, 2338, 2460
Bst6I	CTCTTC	2 cut(s)	1578, 2598
BstAPI	GCANNNNNTGC	2 cut(s)	193, 1281
BstAUI	TGTACA	2 cut(s)	1630, 2865
BstBAI	YACGTR	1 cut(s)	389
BstC8I	GCNNGC	8 cut(s)	194, 972, 2201, 2391, 2435, 2439, 2958, 3002
BstDEI	CTNAG	7 cut(s)	81, 985, 1053, 1218, 1472, 1488, 2821
BstDSI	CCRYGG	1 cut(s)	2906
BstF5I	GGATG	8 cut(s)	514, 1249, 1713, 1865, 2122, 2582, 2716, 2845
BstFNI	CGCG	2 cut(s)	295, 2393
BstKTI	GATC	8 cut(s)	128, 703, 835, 1447, 1600, 2149, 2251, 2529
BstMAI	GTCTC	1 cut(s)	1069
BstMBI	GATC	8 cut(s)	125, 700, 832, 1444, 1597, 2146, 2248, 2526
BstMWI	GCNNNNNNNGC	9 cut(s)	193, 1080, 1281, 1349, 1676, 1971, 2379, 2395, 2962
BstNI	CCWGG	4 cut(s)	224, 468, 2031, 2764
BstNSI	RCATGY	4 cut(s)	215, 462, 1486, 1530
BstSCI	CCNGG	4 cut(s)	222, 466, 2029, 2762
BstSFI	CTRYAG	4 cut(s)	726, 912, 1695, 2412
BstUI	CGCG	2 cut(s)	295, 2393
BstV1I	GCAGC	4 cut(s)	158, 206, 1271, 1637
BstV2I	GAAGAC	2 cut(s)	1852, 2498
BstX2I	RGATCY	3 cut(s)	125, 700, 832
BstYI	RGATCY	3 cut(s)	125, 700, 832
Bsu15I	ATCGAT	1 cut(s)	1101
Bsu36I	CCTNAGG	1 cut(s)	1053
BsuI	GTATCC	1 cut(s)	1910
BsuRI	GGCC	5 cut(s)	101, 799, 2119, 2762, 2819
BsuTUI	ATCGAT	1 cut(s)	1101
BtgI	CCRYGG	1 cut(s)	2906
BtgZI	GCGATG	1 cut(s)	2814
BtsCI	GGATG	8 cut(s)	514, 1249, 1713, 1865, 2122, 2582, 2716, 2845
BtsI	GCAGTG	2 cut(s)	396, 921
BtsIMutI	CAGTG	6 cut(s)	279, 396, 921, 1099, 1469, 2334
BtuMI	TCGCGA	1 cut(s)	2393
BveI	ACCTGC	4 cut(s)	919, 1688, 1885, 2712
Cac8I	GCNNGC	8 cut(s)	194, 972, 2201, 2391, 2435, 2439, 2958, 3002
CciI	TCATGA	2 cut(s)	925, 2251
Cfr10I	RCCGGY	1 cut(s)	970
Cfr13I	GGNCC	8 cut(s)	151, 706, 797, 1049, 1815, 2111, 2179, 2760
ClaI	ATCGAT	1 cut(s)	1101
Csp6I	GTAC	9 cut(s)	164, 943, 1007, 1172, 1631, 1707, 2281, 2866, 2995
CviQI	GTAC	9 cut(s)	164, 943, 1007, 1172, 1631, 1707, 2281, 2866, 2995
DdeI	CTNAG	7 cut(s)	81, 985, 1053, 1218, 1472, 1488, 2821
DpnI	GATC	8 cut(s)	127, 702, 834, 1446, 1599, 2148, 2250, 2528
DpnII	GATC	8 cut(s)	125, 700, 832, 1444, 1597, 2146, 2248, 2526
DraI	TTTAAA	1 cut(s)	760
EaeI	YGGCCR	1 cut(s)	99
Eam1104I	CTCTTC	2 cut(s)	1578, 2598
EarI	CTCTTC	2 cut(s)	1578, 2598
Ecl136II	GAGCTC	2 cut(s)	431, 2389
Eco130I	CCWWGG	4 cut(s)	1881, 2114, 2653, 2906
Eco147I	AGGCCT	2 cut(s)	2119, 2819
Eco24I	GRGCYC	2 cut(s)	433, 2391
Eco32I	GATATC	2 cut(s)	751, 1099
Eco47I	GGWCC	6 cut(s)	151, 706, 1049, 1815, 2111, 2179
Eco53kI	GAGCTC	2 cut(s)	431, 2389
Eco57I	CTGAAG	3 cut(s)	18, 285, 326
Eco72I	CACGTG	1 cut(s)	389
Eco81I	CCTNAGG	1 cut(s)	1053
Eco88I	CYCGRG	1 cut(s)	2183
EcoICRI	GAGCTC	2 cut(s)	431, 2389
EcoO109I	RGGNCCY	2 cut(s)	2179, 2760
EcoRI	GAATTC	1 cut(s)	1204
EcoRII	CCWGG	4 cut(s)	222, 466, 2029, 2762
EcoRV	GATATC	2 cut(s)	751, 1099
EcoT14I	CCWWGG	4 cut(s)	1881, 2114, 2653, 2906
EcoT22I	ATGCAT	2 cut(s)	189, 1956
EcoT38I	GRGCYC	2 cut(s)	433, 2391
ErhI	CCWWGG	4 cut(s)	1881, 2114, 2653, 2906
FaqI	GGGAC	5 cut(s)	298, 497, 692, 1150, 2192
FauI	CCCGC	1 cut(s)	2700
FauNDI	CATATG	2 cut(s)	745, 2079
FblI	GTMKAC	2 cut(s)	1580, 2415
Fnu4HI	GCNGC	4 cut(s)	147, 220, 1285, 1626
FokI	GGATG	8 cut(s)	521, 1256, 1700, 1872, 2109, 2569, 2723, 2832
FriOI	GRGCYC	2 cut(s)	433, 2391
Fsp4HI	GCNGC	4 cut(s)	147, 220, 1285, 1626
FspBI	CTAG	8 cut(s)	108, 872, 1181, 1514, 1523, 1865, 2757, 2978
GluI	GCNGC	4 cut(s)	147, 220, 1285, 1626
GsaI	CCCAGC	2 cut(s)	2179, 2231
HaeIII	GGCC	5 cut(s)	101, 799, 2119, 2762, 2819
HapII	CCGG	2 cut(s)	971, 2066
HpaII	CCGG	2 cut(s)	971, 2066
HphI	GGTGA	6 cut(s)	50, 82, 1576, 1712, 2045, 2560
Hpy166II	GTNNAC	9 cut(s)	69, 277, 386, 1389, 1581, 2024, 2086, 2416, 2932
Hpy188I	TCNGA	8 cut(s)	327, 534, 939, 1221, 1321, 1501, 2531, 3014
Hpy8I	GTNNAC	9 cut(s)	69, 277, 386, 1389, 1581, 2024, 2086, 2416, 2932
HpyAV	CCTTC	7 cut(s)	42, 606, 1375, 2270, 2545, 2596, 2743
HpyCH4III	ACNGT	5 cut(s)	181, 1979, 2090, 2338, 2460
HpyCH4IV	ACGT	2 cut(s)	388, 2884
HpyF10VI	GCNNNNNNNGC	9 cut(s)	193, 1080, 1281, 1349, 1676, 1971, 2379, 2395, 2962
HpyF3I	CTNAG	7 cut(s)	81, 985, 1053, 1218, 1472, 1488, 2821
HpySE526I	ACGT	2 cut(s)	388, 2884
KflI	GGGWCCC	1 cut(s)	2179
KroI	GCCGGC	1 cut(s)	970
KroNI	GCCGGC	1 cut(s)	972
Kzo9I	GATC	8 cut(s)	125, 700, 832, 1444, 1597, 2146, 2248, 2526
LmnI	GCTCC	3 cut(s)	428, 436, 1782
Lsp1109I	GCAGC	4 cut(s)	158, 206, 1271, 1637
LweI	GCATC	8 cut(s)	447, 1201, 1311, 1764, 1802, 2650, 2701, 2707
MaeI	CTAG	8 cut(s)	108, 872, 1181, 1514, 1523, 1865, 2757, 2978
MaeII	ACGT	2 cut(s)	388, 2884
MaeIII	GTNAC	5 cut(s)	1421, 2070, 2257, 2836, 2885
MalI	GATC	8 cut(s)	127, 702, 834, 1446, 1599, 2148, 2250, 2528
MboI	GATC	8 cut(s)	125, 700, 832, 1444, 1597, 2146, 2248, 2526
MboII	GAAGA	9 cut(s)	464, 567, 635, 852, 1103, 1565, 1857, 2503, 2585
MfeI	CAATTG	1 cut(s)	2262
MflI	RGATCY	3 cut(s)	125, 700, 832
MhlI	GDGCHC	2 cut(s)	433, 2391
MlsI	TGGCCA	1 cut(s)	101
MluNI	TGGCCA	1 cut(s)	101
MlyI	GAGTC	1 cut(s)	578
MmeI	TCCRAC	3 cut(s)	1472, 1785, 2233
Mox20I	TGGCCA	1 cut(s)	101
Mph1103I	ATGCAT	2 cut(s)	189, 1956
MroNI	GCCGGC	1 cut(s)	970
MroXI	GAANNNNTTC	2 cut(s)	1208, 2791
MscI	TGGCCA	1 cut(s)	101
MseI	TTAA	5 cut(s)	57, 759, 1641, 1664, 2048
MslI	CAYNNNNRTG	3 cut(s)	2031, 2127, 2732
Msp20I	TGGCCA	1 cut(s)	101
MspA1I	CMGCKG	5 cut(s)	149, 1343, 1628, 2441, 2574
MspI	CCGG	2 cut(s)	971, 2066
MspR9I	CCNGG	4 cut(s)	224, 468, 2031, 2764
MunI	CAATTG	1 cut(s)	2262
MvaI	CCWGG	4 cut(s)	224, 468, 2031, 2764
MvnI	CGCG	2 cut(s)	295, 2393
MwoI	GCNNNNNNNGC	9 cut(s)	193, 1080, 1281, 1349, 1676, 1971, 2379, 2395, 2962
NaeI	GCCGGC	1 cut(s)	972
NcoI	CCATGG	1 cut(s)	2906
NdeI	CATATG	2 cut(s)	745, 2079
NdeII	GATC	8 cut(s)	125, 700, 832, 1444, 1597, 2146, 2248, 2526
NgoMIV	GCCGGC	1 cut(s)	970
NlaIV	GGNNCC	4 cut(s)	708, 834, 2180, 2181
NmeAIII	GCCGAG	1 cut(s)	2941
NmuCI	GTSAC	3 cut(s)	2257, 2836, 2885
NruI	TCGCGA	1 cut(s)	2393
NsiI	ATGCAT	2 cut(s)	189, 1956
NspI	RCATGY	4 cut(s)	215, 462, 1486, 1530
OliI	CACNNNNGTG	1 cut(s)	2031
PagI	TCATGA	2 cut(s)	925, 2251
PaqCI	CACCTGC	2 cut(s)	1688, 1885
PceI	AGGCCT	2 cut(s)	2119, 2819
PdiI	GCCGGC	1 cut(s)	972
PdmI	GAANNNNTTC	2 cut(s)	1208, 2791
PfeI	GAWTC	9 cut(s)	27, 41, 989, 1496, 1555, 1827, 1943, 2191, 2792
PflMI	CCANNNNNTGG	4 cut(s)	703, 2083, 2215, 2429
PfoI	TCCNGGA	1 cut(s)	466
PkrI	GCNGC	4 cut(s)	148, 221, 1286, 1627
PleI	GAGTC	1 cut(s)	577
PmaCI	CACGTG	1 cut(s)	389
PmlI	CACGTG	1 cut(s)	389
PpsI	GAGTC	1 cut(s)	577
Ppu21I	YACGTR	1 cut(s)	389
PpuMI	RGGWCCY	1 cut(s)	2179
PsiI	TTATAA	2 cut(s)	642, 1743
Psp124BI	GAGCTC	2 cut(s)	433, 2391
Psp5II	RGGWCCY	1 cut(s)	2179
Psp6I	CCWGG	4 cut(s)	222, 466, 2029, 2762
PspCI	CACGTG	1 cut(s)	389
PspFI	CCCAGC	2 cut(s)	2175, 2227
PspGI	CCWGG	4 cut(s)	222, 466, 2029, 2762
PspN4I	GGNNCC	4 cut(s)	708, 834, 2180, 2181
PspPI	GGNCC	8 cut(s)	151, 706, 797, 1049, 1815, 2111, 2179, 2760
PspPPI	RGGWCCY	1 cut(s)	2179
PsrI	GAACNNNNNNTAC	2 cut(s)	999, 1031
PstI	CTGCAG	3 cut(s)	730, 916, 1699
PsuI	RGATCY	3 cut(s)	125, 700, 832
PvuII	CAGCTG	4 cut(s)	1343, 1628, 2441, 2574
RruI	TCGCGA	1 cut(s)	2393
RsaI	GTAC	9 cut(s)	165, 944, 1008, 1173, 1632, 1708, 2282, 2867, 2996
RsaNI	GTAC	9 cut(s)	164, 943, 1007, 1172, 1631, 1707, 2281, 2866, 2995
RseI	CAYNNNNRTG	3 cut(s)	2031, 2127, 2732
SacI	GAGCTC	2 cut(s)	433, 2391
SaqAI	TTAA	5 cut(s)	57, 759, 1641, 1664, 2048
SatI	GCNGC	4 cut(s)	147, 220, 1285, 1626
Sau3AI	GATC	8 cut(s)	125, 700, 832, 1444, 1597, 2146, 2248, 2526
Sau96I	GGNCC	8 cut(s)	151, 706, 797, 1049, 1815, 2111, 2179, 2760
SbfI	CCTGCAGG	1 cut(s)	730
SchI	GAGTC	1 cut(s)	578
ScrFI	CCNGG	4 cut(s)	224, 468, 2031, 2764
SdaI	CCTGCAGG	1 cut(s)	730
SduI	GDGCHC	2 cut(s)	433, 2391
SfaNI	GCATC	8 cut(s)	447, 1201, 1311, 1764, 1802, 2650, 2701, 2707
SfcI	CTRYAG	4 cut(s)	726, 912, 1695, 2412
SinI	GGWCC	6 cut(s)	151, 706, 1049, 1815, 2111, 2179
SmiMI	CAYNNNNRTG	3 cut(s)	2031, 2127, 2732
SmlI	CTYRAG	1 cut(s)	1718
SmoI	CTYRAG	1 cut(s)	1718
Sse8387I	CCTGCAGG	1 cut(s)	730
SseBI	AGGCCT	2 cut(s)	2119, 2819
SsiI	CCGC	3 cut(s)	149, 295, 2707
SspMI	CTAG	8 cut(s)	108, 872, 1181, 1514, 1523, 1865, 2757, 2978
SstI	GAGCTC	2 cut(s)	433, 2391
StuI	AGGCCT	2 cut(s)	2119, 2819
StyD4I	CCNGG	4 cut(s)	222, 466, 2029, 2762
StyI	CCWWGG	4 cut(s)	1881, 2114, 2653, 2906
TaaI	ACNGT	5 cut(s)	181, 1979, 2090, 2338, 2460
TaiI	ACGT	2 cut(s)	391, 2887
TaqI	TCGA	3 cut(s)	1101, 1305, 1411
TaqII	GACCGA	1 cut(s)	2510
TatI	WGTACW	3 cut(s)	1630, 1706, 2865
TfiI	GAWTC	9 cut(s)	27, 41, 989, 1496, 1555, 1827, 1943, 2191, 2792
Tru1I	TTAA	5 cut(s)	57, 759, 1641, 1664, 2048
Tru9I	TTAA	5 cut(s)	57, 759, 1641, 1664, 2048
TscAI	CASTG	6 cut(s)	279, 403, 921, 1099, 1476, 2341
TseFI	GTSAC	3 cut(s)	2257, 2836, 2885
TseI	GCWGC	4 cut(s)	146, 219, 1284, 1625
Tsp45I	GTSAC	3 cut(s)	2257, 2836, 2885
TspGWI	ACGGA	2 cut(s)	1857, 2367
TspRI	CASTG	6 cut(s)	279, 403, 921, 1099, 1476, 2341
Van91I	CCANNNNNTGG	4 cut(s)	703, 2083, 2215, 2429
VpaK11BI	GGWCC	6 cut(s)	151, 706, 1049, 1815, 2111, 2179
XapI	RAATTY	5 cut(s)	199, 299, 628, 1204, 1407
XbaI	TCTAGA	2 cut(s)	1864, 2977
XceI	RCATGY	4 cut(s)	215, 462, 1486, 1530
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1295
XmiI	GTMKAC	2 cut(s)	1580, 2415
XmnI	GAANNNNTTC	2 cut(s)	1208, 2791
XspI	CTAG	8 cut(s)	108, 872, 1181, 1514, 1523, 1865, 2757, 2978
Zsp2I	ATGCAT	2 cut(s)	189, 1956

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.