Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G14790 |
| fragaria_vesca | FvH4_4g33391 FvH4_4g33391 FvH4_4g33391 FvH4_4g33391 FvH4_4g33391 FvH4_4g33391 |
| malus_domestica | MD13G1019300.v1.1 MD13G1041300.v1.1 MD16G1017200.v1.1 |
| prunus_persica | Prupe.1G334600_v2.0.a1 Prupe.1G334600_v2.0.a1 |
| pyrus_communis | pycom13g01640 pycom13g03560 pycom13g03580 pycom16g01590 |
| rosa_chinensis | RchiOBHm_Chr4g0442681 RchiOBHm_Chr4g0442701 |
| rosa_laevigata | RLG00000005990 RLG00000005992 |
| rosa_multiflora | Rmu_ssc0000204.1_g000024 Rmu_ssc0000204.1_g000026 |
| rosa_roxburghii | Rroxscaffold_5G00383490 Rroxscaffold_5G00383510 |
| rosa_rugosa | Rorug04G0342200 Rorug04G0342300 |
| rosa_samantha | Rh4AG394700 Rh4AG394900 Rh4BG407600 Rh4CG423000 Rh4CG423600 Rh4DG401700 Rh4DG401900 |
| rosa_wichuraiana | Rw4G034110 Rw4G034130 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 4 cut(s) | 462, 543, 2040, 2940 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 623, 2897 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 2350, 2482, 2696, 2837 |
| AccI | GTMKAC | 1 cut(s) | 573 |
| AccII | CGCG | 2 cut(s) | 654, 1273 |
| AclWI | GGATC | 5 cut(s) | 923, 2523, 2844, 2996, 3059 |
| AcoI | YGGCCR | 2 cut(s) | 192, 1659 |
| AcsI | RAATTY | 6 cut(s) | 62, 395, 1364, 1370, 1471, 1632 |
| AcuI | CTGAAG | 3 cut(s) | 999, 2839, 3156 |
| AcvI | CACGTG | 1 cut(s) | 485 |
| AflII | CTTAAG | 2 cut(s) | 2015, 3091 |
| AflIII | ACRYGT | 1 cut(s) | 340 |
| AjnI | CCWGG | 6 cut(s) | 823, 889, 1192, 2296, 2465, 3176 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2386, 2418 |
| Alw21I | GWGCWC | 2 cut(s) | 532, 1688 |
| Alw26I | GTCTC | 3 cut(s) | 704, 737, 1171 |
| Alw44I | GTGCAC | 1 cut(s) | 1684 |
| AlwI | GGATC | 5 cut(s) | 923, 2523, 2844, 2996, 3059 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 3002 |
| AoxI | GGCC | 6 cut(s) | 192, 266, 893, 1659, 2377, 2384 |
| ApaI | GGGCCC | 1 cut(s) | 2381 |
| ApaLI | GTGCAC | 1 cut(s) | 1684 |
| ApeKI | GCWGC | 8 cut(s) | 315, 494, 497, 1002, 1445, 1505, 1922, 2074 |
| ApoI | RAATTY | 6 cut(s) | 62, 395, 1364, 1370, 1471, 1632 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 596, 726, 1575, 2457, 2805 |
| AspLEI | GCGC | 2 cut(s) | 656, 806 |
| AspS9I | GGNCC | 8 cut(s) | 625, 893, 1151, 2112, 2377, 2378, 3087, 3280 |
| AsuC2I | CCSGG | 1 cut(s) | 2087 |
| AsuHPI | GGTGA | 7 cut(s) | 1065, 1208, 1367, 2201, 2827, 3037, 3094 |
| AvaII | GGWCC | 5 cut(s) | 625, 1151, 2112, 3087, 3280 |
| AxyI | CCTNAGG | 1 cut(s) | 209 |
| BaeGI | GKGCMC | 2 cut(s) | 1688, 2381 |
| BaeI | ACNNNNGTAYC | 3 cut(s) | 38, 1711, 1744 |
| BalI | TGGCCA | 1 cut(s) | 194 |
| BanII | GRGCYC | 2 cut(s) | 2381, 3319 |
| BbrPI | CACGTG | 1 cut(s) | 485 |
| BbsI | GAAGAC | 2 cut(s) | 1603, 1894 |
| Bbv12I | GWGCWC | 2 cut(s) | 532, 1688 |
| BbvCI | CCTCAGC | 1 cut(s) | 174 |
| BbvI | GCAGC | 8 cut(s) | 302, 481, 484, 989, 1432, 1492, 1934, 2061 |
| BceAI | ACGGC | 2 cut(s) | 1646, 2629 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2776, 2810 |
| BciT130I | CCWGG | 6 cut(s) | 825, 891, 1194, 2298, 2467, 3178 |
| BciVI | GTATCC | 1 cut(s) | 598 |
| BcnI | CCSGG | 1 cut(s) | 2087 |
| BcoDI | GTCTC | 3 cut(s) | 704, 737, 1171 |
| BfaI | CTAG | 3 cut(s) | 974, 2162, 2172 |
| BfmI | CTRYAG | 1 cut(s) | 2505 |
| BfrI | CTTAAG | 2 cut(s) | 2015, 3091 |
| BfuI | GTATCC | 1 cut(s) | 598 |
| BisI | GCNGC | 8 cut(s) | 316, 495, 498, 1003, 1446, 1506, 1923, 2075 |
| BlsI | GCNGC | 8 cut(s) | 317, 496, 499, 1004, 1447, 1507, 1924, 2076 |
| Bme1390I | CCNGG | 7 cut(s) | 825, 891, 1194, 2087, 2298, 2467, 3178 |
| Bme18I | GGWCC | 5 cut(s) | 625, 1151, 2112, 3087, 3280 |
| BmgT120I | GGNCC | 8 cut(s) | 625, 893, 1151, 2112, 2377, 2378, 3087, 3280 |
| BmiI | GGNNCC | 5 cut(s) | 72, 626, 775, 2379, 2842 |
| BmrFI | CCNGG | 7 cut(s) | 825, 891, 1194, 2087, 2298, 2467, 3178 |
| BmsI | GCATC | 6 cut(s) | 160, 1265, 1930, 2061, 2099, 2917 |
| BpiI | GAAGAC | 2 cut(s) | 1603, 1894 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 989, 1021, 3301, 3333 |
| BpmI | CTGGAG | 3 cut(s) | 807, 3165, 3356 |
| Bpu10I | CCTNAGC | 1 cut(s) | 174 |
| BpuEI | CTTGAG | 1 cut(s) | 732 |
| BpuMI | CCSGG | 1 cut(s) | 2087 |
| BsaAI | YACGTR | 1 cut(s) | 485 |
| BsaBI | GATNNNNATC | 1 cut(s) | 3063 |
| BsaI | GGTCTC | 1 cut(s) | 704 |
| BsaJI | CCNNGG | 7 cut(s) | 189, 263, 533, 890, 2296, 2381, 3257 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 3329, 3359 |
| Bse1I | ACTGG | 4 cut(s) | 151, 1858, 2701, 3136 |
| Bse21I | CCTNAGG | 1 cut(s) | 209 |
| Bse3DI | GCAATG | 4 cut(s) | 813, 2154, 2640, 2794 |
| Bse8I | GATNNNNATC | 1 cut(s) | 3063 |
| BseBI | CCWGG | 6 cut(s) | 825, 891, 1194, 2298, 2467, 3178 |
| BseDI | CCNNGG | 7 cut(s) | 189, 263, 533, 890, 2296, 2381, 3257 |
| BseJI | GATNNNNATC | 1 cut(s) | 3063 |
| BseMI | GCAATG | 4 cut(s) | 813, 2154, 2640, 2794 |
| BseMII | CTCAG | 5 cut(s) | 165, 200, 723, 1348, 3025 |
| BseNI | ACTGG | 4 cut(s) | 151, 1858, 2701, 3136 |
| BseRI | GAGGAG | 5 cut(s) | 235, 810, 1250, 1786, 3067 |
| BseSI | GKGCMC | 2 cut(s) | 1688, 2381 |
| BseXI | GCAGC | 8 cut(s) | 302, 481, 484, 989, 1432, 1492, 1934, 2061 |
| Bsh1236I | CGCG | 2 cut(s) | 654, 1273 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2887 |
| BshFI | GGCC | 6 cut(s) | 194, 268, 895, 1661, 2379, 2386 |
| BsiEI | CGRYCG | 1 cut(s) | 2887 |
| BsiHKAI | GWGCWC | 2 cut(s) | 532, 1688 |
| BsiSI | CCGG | 2 cut(s) | 2086, 2333 |
| BsiWI | CGTACG | 2 cut(s) | 553, 1274 |
| BslFI | GGGAC | 1 cut(s) | 1449 |
| BsmAI | GTCTC | 3 cut(s) | 704, 737, 1171 |
| BsmFI | GGGAC | 1 cut(s) | 1449 |
| BsmI | GAATGC | 3 cut(s) | 238, 475, 1379 |
| BsnI | GGCC | 6 cut(s) | 194, 268, 895, 1661, 2379, 2386 |
| Bso31I | GGTCTC | 1 cut(s) | 704 |
| Bsp120I | GGGCCC | 1 cut(s) | 2377 |
| Bsp1286I | GDGCHC | 4 cut(s) | 532, 1688, 2381, 3319 |
| Bsp1407I | TGTACA | 2 cut(s) | 1782, 1927 |
| Bsp19I | CCATGG | 1 cut(s) | 3257 |
| BspANI | GGCC | 6 cut(s) | 194, 268, 895, 1661, 2379, 2386 |
| BspCNI | CTCAG | 5 cut(s) | 166, 201, 724, 1347, 3024 |
| BspFNI | CGCG | 2 cut(s) | 654, 1273 |
| BspHI | TCATGA | 2 cut(s) | 418, 3024 |
| BspLI | GGNNCC | 5 cut(s) | 72, 626, 775, 2379, 2842 |
| BspPI | GGATC | 5 cut(s) | 923, 2523, 2844, 2996, 3059 |
| BspTI | CTTAAG | 2 cut(s) | 2015, 3091 |
| BspTNI | GGTCTC | 1 cut(s) | 704 |
| BsrDI | GCAATG | 4 cut(s) | 813, 2154, 2640, 2794 |
| BsrGI | TGTACA | 2 cut(s) | 1782, 1927 |
| BsrI | ACTGG | 4 cut(s) | 151, 1858, 2701, 3136 |
| BssECI | CCNNGG | 7 cut(s) | 189, 263, 533, 890, 2296, 2381, 3257 |
| BssNAI | GTATAC | 1 cut(s) | 574 |
| BssT1I | CCWWGG | 3 cut(s) | 189, 2381, 3257 |
| Bst1107I | GTATAC | 1 cut(s) | 574 |
| Bst2UI | CCWGG | 6 cut(s) | 825, 891, 1194, 2298, 2467, 3178 |
| Bst4CI | ACNGT | 3 cut(s) | 18, 1071, 2888 |
| BstAFI | CTTAAG | 2 cut(s) | 2015, 3091 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1502 |
| BstAUI | TGTACA | 2 cut(s) | 1782, 1927 |
| BstBAI | YACGTR | 1 cut(s) | 485 |
| BstC8I | GCNNGC | 4 cut(s) | 897, 2642, 2658, 2706 |
| BstDEI | CTNAG | 8 cut(s) | 174, 209, 501, 732, 1087, 1334, 1650, 3011 |
| BstDSI | CCRYGG | 1 cut(s) | 3257 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 822 |
| BstFNI | CGCG | 2 cut(s) | 654, 1273 |
| BstHHI | GCGC | 2 cut(s) | 656, 806 |
| BstMAI | GTCTC | 3 cut(s) | 704, 737, 1171 |
| BstMCI | CGRYCG | 1 cut(s) | 2887 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 1030, 1502, 1646, 1973, 2603, 2662 |
| BstNI | CCWGG | 6 cut(s) | 825, 891, 1194, 2298, 2467, 3178 |
| BstNSI | RCATGY | 2 cut(s) | 344, 1827 |
| BstSCI | CCNGG | 7 cut(s) | 823, 889, 1192, 2085, 2296, 2465, 3176 |
| BstSFI | CTRYAG | 1 cut(s) | 2505 |
| BstSLI | GKGCMC | 2 cut(s) | 1688, 2381 |
| BstUI | CGCG | 2 cut(s) | 654, 1273 |
| BstV1I | GCAGC | 8 cut(s) | 302, 481, 484, 989, 1432, 1492, 1934, 2061 |
| BstV2I | GAAGAC | 2 cut(s) | 1603, 1894 |
| BstX2I | RGATCY | 1 cut(s) | 3064 |
| BstYI | RGATCY | 1 cut(s) | 3064 |
| BstZ17I | GTATAC | 1 cut(s) | 574 |
| Bsu36I | CCTNAGG | 1 cut(s) | 209 |
| BsuI | GTATCC | 1 cut(s) | 598 |
| BsuRI | GGCC | 6 cut(s) | 194, 268, 895, 1661, 2379, 2386 |
| BtgI | CCRYGG | 1 cut(s) | 3257 |
| BtgZI | GCGATG | 1 cut(s) | 2316 |
| BtsI | GCAGTG | 1 cut(s) | 2601 |
| BtsIMutI | CAGTG | 4 cut(s) | 1023, 1067, 2601, 3019 |
| Cac8I | GCNNGC | 4 cut(s) | 897, 2642, 2658, 2706 |
| CaiI | CAGNNNCTG | 1 cut(s) | 3002 |
| CciI | TCATGA | 2 cut(s) | 418, 3024 |
| CfoI | GCGC | 2 cut(s) | 656, 806 |
| Cfr13I | GGNCC | 8 cut(s) | 625, 893, 1151, 2112, 2377, 2378, 3087, 3280 |
| CseI | GACGC | 1 cut(s) | 3329 |
| DdeI | CTNAG | 8 cut(s) | 174, 209, 501, 732, 1087, 1334, 1650, 3011 |
| DraI | TTTAAA | 3 cut(s) | 856, 993, 1678 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 623, 2897 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 623, 2897 |
| EaeI | YGGCCR | 2 cut(s) | 192, 1659 |
| Eco130I | CCWWGG | 3 cut(s) | 189, 2381, 3257 |
| Eco147I | AGGCCT | 1 cut(s) | 2386 |
| Eco24I | GRGCYC | 2 cut(s) | 2381, 3319 |
| Eco31I | GGTCTC | 1 cut(s) | 704 |
| Eco32I | GATATC | 2 cut(s) | 847, 2428 |
| Eco47I | GGWCC | 5 cut(s) | 625, 1151, 2112, 3087, 3280 |
| Eco57I | CTGAAG | 3 cut(s) | 999, 2839, 3156 |
| Eco72I | CACGTG | 1 cut(s) | 485 |
| Eco81I | CCTNAGG | 1 cut(s) | 209 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 822 |
| EcoO109I | RGGNCCY | 2 cut(s) | 2377, 3087 |
| EcoRII | CCWGG | 6 cut(s) | 823, 889, 1192, 2296, 2465, 3176 |
| EcoRV | GATATC | 2 cut(s) | 847, 2428 |
| EcoT14I | CCWWGG | 3 cut(s) | 189, 2381, 3257 |
| EcoT38I | GRGCYC | 2 cut(s) | 2381, 3319 |
| ErhI | CCWWGG | 3 cut(s) | 189, 2381, 3257 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 870, 902 |
| FaqI | GGGAC | 1 cut(s) | 1449 |
| FauI | CCCGC | 2 cut(s) | 1392, 2503 |
| FauNDI | CATATG | 2 cut(s) | 841, 2346 |
| FblI | GTMKAC | 1 cut(s) | 573 |
| Fnu4HI | GCNGC | 8 cut(s) | 316, 495, 498, 1003, 1446, 1506, 1923, 2075 |
| FriOI | GRGCYC | 2 cut(s) | 2381, 3319 |
| Fsp4HI | GCNGC | 8 cut(s) | 316, 495, 498, 1003, 1446, 1506, 1923, 2075 |
| FspBI | CTAG | 3 cut(s) | 974, 2162, 2172 |
| GlaI | GCGC | 2 cut(s) | 655, 805 |
| GluI | GCNGC | 8 cut(s) | 316, 495, 498, 1003, 1446, 1506, 1923, 2075 |
| GsuI | CTGGAG | 3 cut(s) | 807, 3165, 3356 |
| HaeIII | GGCC | 6 cut(s) | 194, 268, 895, 1661, 2379, 2386 |
| HapII | CCGG | 2 cut(s) | 2086, 2333 |
| HgaI | GACGC | 1 cut(s) | 3329 |
| HhaI | GCGC | 2 cut(s) | 656, 806 |
| Hin6I | GCGC | 2 cut(s) | 654, 804 |
| HinP1I | GCGC | 2 cut(s) | 654, 804 |
| HincII | GTYRAC | 3 cut(s) | 1394, 1950, 2683 |
| HindII | GTYRAC | 3 cut(s) | 1394, 1950, 2683 |
| HindIII | AAGCTT | 2 cut(s) | 434, 3168 |
| HpaII | CCGG | 2 cut(s) | 2086, 2333 |
| HphI | GGTGA | 7 cut(s) | 1065, 1208, 1367, 2201, 2827, 3037, 3094 |
| Hpy99I | CGWCG | 1 cut(s) | 3345 |
| HpyCH4III | ACNGT | 3 cut(s) | 18, 1071, 2888 |
| HpyCH4IV | ACGT | 4 cut(s) | 484, 552, 1277, 2823 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 1030, 1502, 1646, 1973, 2603, 2662 |
| HpyF3I | CTNAG | 8 cut(s) | 174, 209, 501, 732, 1087, 1334, 1650, 3011 |
| HpySE526I | ACGT | 4 cut(s) | 484, 552, 1277, 2823 |
| HspAI | GCGC | 2 cut(s) | 654, 804 |
| Lsp1109I | GCAGC | 8 cut(s) | 302, 481, 484, 989, 1432, 1492, 1934, 2061 |
| LweI | GCATC | 6 cut(s) | 160, 1265, 1930, 2061, 2099, 2917 |
| MaeI | CTAG | 3 cut(s) | 974, 2162, 2172 |
| MaeII | ACGT | 4 cut(s) | 484, 552, 1277, 2823 |
| MaeIII | GTNAC | 7 cut(s) | 251, 336, 1071, 2524, 2888, 3187, 3236 |
| MfeI | CAATTG | 3 cut(s) | 1934, 2529, 2673 |
| MflI | RGATCY | 1 cut(s) | 3064 |
| MhlI | GDGCHC | 4 cut(s) | 532, 1688, 2381, 3319 |
| MlsI | TGGCCA | 1 cut(s) | 194 |
| MluNI | TGGCCA | 1 cut(s) | 194 |
| MlyI | GAGTC | 1 cut(s) | 739 |
| MmeI | TCCRAC | 4 cut(s) | 270, 1791, 2500, 2955 |
| Mox20I | TGGCCA | 1 cut(s) | 194 |
| MroXI | GAANNNNTTC | 5 cut(s) | 596, 726, 1575, 2457, 2805 |
| MscI | TGGCCA | 1 cut(s) | 194 |
| MslI | CAYNNNNRTG | 4 cut(s) | 2394, 2727, 3029, 3080 |
| Msp20I | TGGCCA | 1 cut(s) | 194 |
| MspA1I | CMGCKG | 1 cut(s) | 1925 |
| MspCI | CTTAAG | 2 cut(s) | 2015, 3091 |
| MspI | CCGG | 2 cut(s) | 2086, 2333 |
| MspR9I | CCNGG | 7 cut(s) | 825, 891, 1194, 2087, 2298, 2467, 3178 |
| MunI | CAATTG | 3 cut(s) | 1934, 2529, 2673 |
| Mva1269I | GAATGC | 3 cut(s) | 238, 475, 1379 |
| MvaI | CCWGG | 6 cut(s) | 825, 891, 1194, 2298, 2467, 3178 |
| MvnI | CGCG | 2 cut(s) | 654, 1273 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 1030, 1502, 1646, 1973, 2603, 2662 |
| NciI | CCSGG | 1 cut(s) | 2087 |
| NcoI | CCATGG | 1 cut(s) | 3257 |
| NdeI | CATATG | 2 cut(s) | 841, 2346 |
| NlaIV | GGNNCC | 5 cut(s) | 72, 626, 775, 2379, 2842 |
| NmeAIII | GCCGAG | 1 cut(s) | 780 |
| NmuCI | GTSAC | 6 cut(s) | 251, 1071, 2524, 2888, 3187, 3236 |
| NspI | RCATGY | 2 cut(s) | 344, 1827 |
| PagI | TCATGA | 2 cut(s) | 418, 3024 |
| PceI | AGGCCT | 1 cut(s) | 2386 |
| PciI | ACATGT | 1 cut(s) | 340 |
| PctI | GAATGC | 3 cut(s) | 238, 475, 1379 |
| PdmI | GAANNNNTTC | 5 cut(s) | 596, 726, 1575, 2457, 2805 |
| Pfl23II | CGTACG | 2 cut(s) | 553, 1274 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 2350, 2482, 2696, 2837 |
| PkrI | GCNGC | 8 cut(s) | 317, 496, 499, 1004, 1447, 1507, 1924, 2076 |
| PleI | GAGTC | 1 cut(s) | 739 |
| PmaCI | CACGTG | 1 cut(s) | 485 |
| PmlI | CACGTG | 1 cut(s) | 485 |
| PpsI | GAGTC | 1 cut(s) | 739 |
| Ppu21I | YACGTR | 1 cut(s) | 485 |
| PpuMI | RGGWCCY | 1 cut(s) | 3087 |
| PscI | ACATGT | 1 cut(s) | 340 |
| PsiI | TTATAA | 4 cut(s) | 462, 543, 2040, 2940 |
| Psp5II | RGGWCCY | 1 cut(s) | 3087 |
| Psp6I | CCWGG | 6 cut(s) | 823, 889, 1192, 2296, 2465, 3176 |
| PspCI | CACGTG | 1 cut(s) | 485 |
| PspGI | CCWGG | 6 cut(s) | 823, 889, 1192, 2296, 2465, 3176 |
| PspLI | CGTACG | 2 cut(s) | 553, 1274 |
| PspN4I | GGNNCC | 5 cut(s) | 72, 626, 775, 2379, 2842 |
| PspOMI | GGGCCC | 1 cut(s) | 2377 |
| PspPI | GGNCC | 8 cut(s) | 625, 893, 1151, 2112, 2377, 2378, 3087, 3280 |
| PspPPI | RGGWCCY | 1 cut(s) | 3087 |
| PstNI | CAGNNNCTG | 1 cut(s) | 3002 |
| PsuI | RGATCY | 1 cut(s) | 3064 |
| PvuII | CAGCTG | 1 cut(s) | 1925 |
| RseI | CAYNNNNRTG | 4 cut(s) | 2394, 2727, 3029, 3080 |
| SatI | GCNGC | 8 cut(s) | 316, 495, 498, 1003, 1446, 1506, 1923, 2075 |
| Sau96I | GGNCC | 8 cut(s) | 625, 893, 1151, 2112, 2377, 2378, 3087, 3280 |
| SchI | GAGTC | 1 cut(s) | 739 |
| ScrFI | CCNGG | 7 cut(s) | 825, 891, 1194, 2087, 2298, 2467, 3178 |
| SduI | GDGCHC | 4 cut(s) | 532, 1688, 2381, 3319 |
| SfaNI | GCATC | 6 cut(s) | 160, 1265, 1930, 2061, 2099, 2917 |
| SfcI | CTRYAG | 1 cut(s) | 2505 |
| SinI | GGWCC | 5 cut(s) | 625, 1151, 2112, 3087, 3280 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 2394, 2727, 3029, 3080 |
| SmlI | CTYRAG | 3 cut(s) | 747, 2015, 3091 |
| SmoI | CTYRAG | 3 cut(s) | 747, 2015, 3091 |
| SseBI | AGGCCT | 1 cut(s) | 2386 |
| SspI | AATATT | 1 cut(s) | 2549 |
| SspMI | CTAG | 3 cut(s) | 974, 2162, 2172 |
| StuI | AGGCCT | 1 cut(s) | 2386 |
| StyD4I | CCNGG | 7 cut(s) | 823, 889, 1192, 2085, 2296, 2465, 3176 |
| StyI | CCWWGG | 3 cut(s) | 189, 2381, 3257 |
| TaaI | ACNGT | 3 cut(s) | 18, 1071, 2888 |
| TaiI | ACGT | 4 cut(s) | 487, 555, 1280, 2826 |
| TaqI | TCGA | 6 cut(s) | 468, 831, 1708, 2237, 2901, 3319 |
| TatI | WGTACW | 4 cut(s) | 1177, 1782, 1927, 2003 |
| TscAI | CASTG | 4 cut(s) | 1023, 1074, 2608, 3019 |
| TseFI | GTSAC | 6 cut(s) | 251, 1071, 2524, 2888, 3187, 3236 |
| TseI | GCWGC | 8 cut(s) | 315, 494, 497, 1002, 1445, 1505, 1922, 2074 |
| Tsp45I | GTSAC | 6 cut(s) | 251, 1071, 2524, 2888, 3187, 3236 |
| TspGWI | ACGGA | 1 cut(s) | 2297 |
| TspRI | CASTG | 4 cut(s) | 1023, 1074, 2608, 3019 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 2350, 2482, 2696, 2837 |
| Vha464I | CTTAAG | 2 cut(s) | 2015, 3091 |
| VneI | GTGCAC | 1 cut(s) | 1684 |
| VpaK11BI | GGWCC | 5 cut(s) | 625, 1151, 2112, 3087, 3280 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 822 |
| XapI | RAATTY | 6 cut(s) | 62, 395, 1364, 1370, 1471, 1632 |
| XbaI | TCTAGA | 1 cut(s) | 2161 |
| XceI | RCATGY | 2 cut(s) | 344, 1827 |
| XmiI | GTMKAC | 1 cut(s) | 573 |
| XmnI | GAANNNNTTC | 5 cut(s) | 596, 726, 1575, 2457, 2805 |
| XspI | CTAG | 3 cut(s) | 974, 2162, 2172 |