Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0003605

Physical Location & Seq

Genomic Coordinates Forward (+)

2367647 .. 2368753

Gene Structure 1107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g03560.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGCCAACAAATAAGCTATTTAGTTTCTGGAATATGAACAATGTTTCAGTGGATTTTGGGATTGGATTGCAGAAACTAGTTTGTCGTCTAAAATATGAAGCTCTGGAGTATATGCTCGAACTTTCCTATGAAAACATCTGGCAGATTGAGTTGCACCGTCCACGCGGTCGTGCTGCTAAGCATCTTCTGATTCAGTCCTTCTCTTCCACAGTCTGTGTAAGCTTTGCAATTGCTTCGCTCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009615 GO:0009719 GO:0009725 GO:0009751 GO:0009892 GO:0009987 GO:0010025 GO:0010033 GO:0010166 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0043331 GO:0044237 GO:0044238 GO:0046483 GO:0046677 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060147 GO:0060148 GO:0060255 GO:0060968 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:1901360 GO:1901568 GO:1901570 GO:1901576 GO:1901698 GO:1901699 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RdRP

Protein Analysis

82

Amino Acids

9.38

Weight (kDa)

8.71

Isoelectric Point (pI)

36.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14790
fragaria_vesca	FvH4_4g33391 FvH4_4g33391 FvH4_4g33391 FvH4_4g33391 FvH4_4g33391 FvH4_4g33391
malus_domestica	MD13G1019300.v1.1 MD13G1041300.v1.1 MD16G1017200.v1.1
prunus_persica	Prupe.1G334600_v2.0.a1 Prupe.1G334600_v2.0.a1
pyrus_communis	pycom13g01640 pycom13g03560 pycom13g03580 pycom16g01590
rosa_chinensis	RchiOBHm_Chr4g0442681 RchiOBHm_Chr4g0442701
rosa_laevigata	RLG00000005990 RLG00000005992
rosa_multiflora	Rmu_ssc0000204.1_g000024 Rmu_ssc0000204.1_g000026
rosa_roxburghii	Rroxscaffold_5G00383490 Rroxscaffold_5G00383510
rosa_rugosa	Rorug04G0342200 Rorug04G0342300
rosa_samantha	Rh4AG394700 Rh4AG394900 Rh4BG407600 Rh4CG423000 Rh4CG423600 Rh4DG401700 Rh4DG401900
rosa_wichuraiana	Rw4G034110 Rw4G034130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	165
AciI	CCGC	1 cut(s)	165
AhlI	ACTAGT	1 cut(s)	76
AluBI	AGCT	3 cut(s)	16, 101, 222
AluI	AGCT	3 cut(s)	16, 101, 222
ApeKI	GCWGC	1 cut(s)	173
BbvI	GCAGC	1 cut(s)	160
BcgI	CGANNNNNNTGC	1 cut(s)	216
BcuI	ACTAGT	1 cut(s)	76
BfaI	CTAG	1 cut(s)	77
BisI	GCNGC	1 cut(s)	174
BlpI	GCTNAGC	1 cut(s)	177
BlsI	GCNGC	1 cut(s)	175
BmsI	GCATC	1 cut(s)	190
BpmI	CTGGAG	1 cut(s)	125
Bpu1102I	GCTNAGC	1 cut(s)	177
BseXI	GCAGC	1 cut(s)	160
Bsh1236I	CGCG	1 cut(s)	165
Bsh1285I	CGRYCG	1 cut(s)	169
BsiEI	CGRYCG	1 cut(s)	169
Bsp1720I	GCTNAGC	1 cut(s)	177
BspACI	CCGC	1 cut(s)	165
BspFNI	CGCG	1 cut(s)	165
Bst4CI	ACNGT	2 cut(s)	158, 211
Bst6I	CTCTTC	1 cut(s)	208
BstDEI	CTNAG	1 cut(s)	177
BstFNI	CGCG	1 cut(s)	165
BstMCI	CGRYCG	1 cut(s)	169
BstUI	CGCG	1 cut(s)	165
BstV1I	GCAGC	1 cut(s)	160
BtsIMutI	CAGTG	1 cut(s)	54
CviJI	RGCY	3 cut(s)	16, 101, 222
CviKI_1	RGCY	3 cut(s)	16, 101, 222
DdeI	CTNAG	1 cut(s)	177
Eam1104I	CTCTTC	1 cut(s)	208
EarI	CTCTTC	1 cut(s)	208
FaiI	YATR	5 cut(s)	35, 96, 111, 113, 129
Fnu4HI	GCNGC	1 cut(s)	174
Fsp4HI	GCNGC	1 cut(s)	174
FspBI	CTAG	1 cut(s)	77
GluI	GCNGC	1 cut(s)	174
GsuI	CTGGAG	1 cut(s)	125
HindIII	AAGCTT	1 cut(s)	220
HinfI	GANTC	1 cut(s)	190
Hpy166II	GTNNAC	1 cut(s)	161
Hpy188I	TCNGA	1 cut(s)	189
Hpy188III	TCNNGA	2 cut(s)	28, 104
Hpy8I	GTNNAC	1 cut(s)	161
HpyAV	CCTTC	1 cut(s)	208
HpyCH4III	ACNGT	2 cut(s)	158, 211
HpyCH4V	TGCA	3 cut(s)	70, 154, 227
HpyF3I	CTNAG	1 cut(s)	177
LpnPI	CCDG	3 cut(s)	13, 89, 124
Lsp1109I	GCAGC	1 cut(s)	160
LweI	GCATC	1 cut(s)	190
MaeI	CTAG	1 cut(s)	77
MboII	GAAGA	2 cut(s)	176, 195
MfeI	CAATTG	1 cut(s)	228
MluCI	AATT	1 cut(s)	228
MunI	CAATTG	1 cut(s)	228
MvnI	CGCG	1 cut(s)	165
PfeI	GAWTC	1 cut(s)	190
PkrI	GCNGC	1 cut(s)	175
SatI	GCNGC	1 cut(s)	174
SetI	ASST	3 cut(s)	18, 103, 224
SfaNI	GCATC	1 cut(s)	190
SgeI	CNNG	8 cut(s)	40, 89, 116, 128, 151, 174, 176, 182
SpeI	ACTAGT	1 cut(s)	76
Sse9I	AATT	1 cut(s)	228
SsiI	CCGC	1 cut(s)	165
SspMI	CTAG	1 cut(s)	77
TaaI	ACNGT	2 cut(s)	158, 211
TaqI	TCGA	1 cut(s)	117
TasI	AATT	1 cut(s)	228
TfiI	GAWTC	1 cut(s)	190
TscAI	CASTG	1 cut(s)	54
TseI	GCWGC	1 cut(s)	173
TspDTI	ATGAA	3 cut(s)	50, 111, 144
TspRI	CASTG	1 cut(s)	54
XspI	CTAG	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.