Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003605

Physical Location & Seq

Genomic Coordinates Reverse (-)

63066279 .. 63071032

Gene Structure 4754 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00383490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3282 bp

ATGGGGAAGACAATACAGTTATATGGATTCCCTTCAGGTGAATCTGCCGAAAAAATTAAGGTATTTTTGGAGAAACATACAGGAGAAGGAAGTGTTTTTGCTCTGAAATTACGGCCGGCCAAAAATGGGGGAAGATTCTATGCTATCATACAGTTTCAGTCCACCAGTCAGGCTGAGCTTATCACCACTTTGGCTAAGGCTAGGCTGTGGTATGGGAGATCATATTTGAACGCTCGTCCGGTGGACCTTGATATTGTACCAAAGCCAAGAACTTTTATGCATAGCTTGAAAAATTTAGTATTGCATGTTGGCTGCCAGATTGCGAATGATAAGTTGTCTGTTTTGTGGAGAACGGCTGAAGTTTCAGTGGACTTTGGGATTGGAATGAGGAAATTGCAATTTCGGCTGTTACATCGTCAGAAGTTATATAGACTTCAGCTCTCTTATGAGAACATCTGGCAAATTGAGTTGCATCGTCCACGTGGTCACACTGCAAAATATCTTGTCATTCAGTTATATGGAGCTCCTCGCATCTACCAACAAGAAGAAGCATGTTCTTCTGGAAATGTATATGATGACCCTCGTATGAACTACTTTTGGGATGTCCCTGATGACCAATGGGTTCGGACCACTGATTTCACTCCACGAAGCTGTATTGGGGAGTCATCATCATTATGTTTAGAGCTTCCTTCTGGTCGCCAACTTCCTGATTTTAAAGAAAATTTTGCTTATTATAAGGAGAATGATGGGCAATTTATCTTGGAGAATGGCTCAACTTTCTCTTGCAACCGAGATCTGGTCCCTATTGTTGGTTCTCCTGCAGGGGTTGATTTGCCATATGATATCTTGTTTAAAATAAACTTGCTCGTTCAAATGGGTTGTCTATCAGGGCCGACACTGGATAATAGTTTTTATAGGCTGGTGGATCCACGAAGAATAACTCGTTCCTGTATAGAGTATGCCCTAGATAAATTATCTAATTTGAAAGAGAGCTGTTATGAACCTGCAGTGTGGCTTCCTGAGGAATATCGGAAGTACCTGACATCAAAGAAACCTCCAAAGCCGGCACTTATCTCCTTAGATTCTGGTTTGGTATATGTACGCAGGGTTCAAATAACACCATCTAAAGTGTATTTCTCTGGTCCTGAGGTTAATGTCTCAAATCGCATACTACGCCAGTATTCCAGTGATATCGATAACTTTCTTCGTGTTTCATTTGTTGATGAGGAGATGGAAAAACACTATTCAACAGATTTATCCCCCGTACATCTACTAGGAAAACTCACATCTACAACAGAATTCTTTCTATTCTCAGAAACGGCATATGCTGATAAGATAAGAGCAGGGATGGGGGATTTTCGCAAGATAAGAAATGTGGCAAAGTATGCTGCCAGATTGGGTCAATCTTTTGGCTCCTCTACTGAAACTCTAAGTGTTGCCAGGAATGAAATTGAAGTTATTCCTGATGTAACCATTAACTGGGGTGGAGTCAAATATGTGTTCTCCGATGGGATTGGGAAAATATCAGCTGATTTTGCAAGGAAAGTAGCCTTCAAATGTGGCTATAAAGCGTTCACACCATCTGCATTTCAAATTCGATATGGTGGTTACAAAGGTGTTGTAGCTGTTGATCCAACCTCGTCAATGAAATTATCACTGAGAAAGAGCATGTCCAAGTATGATTCTGAAAACACCAAGCTAGATGTTCTAGCATGTAGCAAGTTTCAGCCTTGTTTTTTGAATCGTCAGTTGATAACTCTTCTGTCTACACTTGGAGTTCAAGATCATGTTTTCTTGAAAAAGCAAAGAGCAGCTGTACAACAACTTAATGCCATATTGACTGACCCATTAAAAGCAGAGGAGGCTCTTGATTTGATGTCTGCAGGTGAGAGTACAAACATCCTCAAGGAACTGCTGATGTGTGGTTATAAACCTGATGTTGAACCATTCCTTTCAATGATGCTCCAAACATTTCGGGCATCAAAGTTGTTGGAATTGAGGACCAAAACAAGAATCTTTATCCCAGACGGAAGAGCAATGATGGGATGTCTAGACGAAACAAGAACCTTGGAATATGGGCAGGTGTTTGTGCAAATCGCTGGAAACAGACAAAGGCAGTTATTTGATGATTCATTCATGCATAGTGGAAGCTCATCAGGCAACTGTTTTGTTATTGATGGAAAGGTGGTTGTTGCAAAGAACCCATGTTTACACCCTGGTGATGTGCGTGTTTTAAGGGCTGTGAATGTGCCAGAGTTACACCATATGGTGGACTGTGTGGTATTTCCACAAAAAGGACTAAGGCCTCATCCAAATGAATGTTCTGGAAGTGATCTTGATGGAGATATTTACTTTGTTTGCTGGGACCCCGAGTTGATTCCTGGCAAGCAAATCCAACCTATGGATTATACCCCAGCACCAACTGTAGAGATGGAGCATGATGTCACAATTGAGGAAGTAGAAGAGTACTTTGTGAACTACATACTCAATGATAGTTTGGGGATAATTGCCAATGCCCACACTGTTTTTGCTGACAGAGAGTATGGTAAAGCAATGAGCCCTCCATGCATAAAGCTTGCAAAGCTATTTTCAATTGCTGTAGACTTTCCAAAAACTGGCGTGCCAGCTGTGATACCACCAGAACTGTATGTCAAGGAATATCCAGATTTCATGGAGAAGCCCGACAAAAGCACCTATCTTTCAAGCAATGTGATCGGACAGCTATTTCGTGAGGTGAAGGACATTGCACCCCATGACAGCTGTATTACATCCTTCACTCTTCAAGTGGCGACAAAATCCTATGACCCTGACATGGAGGTTGATGGCTTTGAGGATTACCTTGAAGATGCTTTCTATTACAAAGGCAATTATGATTACAAATTGGGAAACCTGTTGGATTACTATGGGATCAAGACAGAAGCTGAAATATTGAGTGGGAGTATTATGAGCATGTCAAAATCTTTCACCAAGAGGCGGGATGCAGATGCTATAAACATGGCTGTGAAGTCATTGAGGAAGGAAGCTAGGGCCTGGTTCAATGAGAAAGGAACTGGAATAGATTCCGGCGATGATGTCTATGCAAGAGCCTCAGCTTGGTATTATGTCACATATCATCCCAAGTATTTTGGTTTGTACAATGAGGGAATGAAACGTGACCATTTTATCAGCTTTCCATGGTGTGTTTATGACAAGCTGGTTCACATAAAAAAGGACAAAGTAAGGCAAGCTCGGCGTATATCATCTCTAGAAAGTCAGTTGAGGTACGGCTTGCATTTGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009615 GO:0009719 GO:0009725 GO:0009751 GO:0009892 GO:0009987 GO:0010025 GO:0010033 GO:0010166 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0043331 GO:0044237 GO:0044238 GO:0046483 GO:0046677 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060147 GO:0060148 GO:0060255 GO:0060968 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:1901360 GO:1901568 GO:1901570 GO:1901576 GO:1901698 GO:1901699 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RdRP

Protein Analysis

1093

Amino Acids

124.18

Weight (kDa)

7.87

Isoelectric Point (pI)

38.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_RdRP1_2	PF26250	4 - 81	4.3e-17	RdRP1/2, RRM domain
RDR6_2nd	PF24577	98 - 247	7.1e-06	RNA-dependent RNA polymerase 6 second domain
PH_RDR2	PF24823	101 - 252	5.3e-46	RDR2 PH-like domain
RdRP_helical	PF26252	273 - 351	2.8e-10	RNA dependent RNA polymerase, helical domain
RdRP	PF05183	372 - 912	2.4e-171	RNA dependent RNA polymerase
RdRP_head	PF26253	933 - 1077	3.6e-48	RdRP, head domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14790
fragaria_vesca	FvH4_4g33391 FvH4_4g33391 FvH4_4g33391 FvH4_4g33391 FvH4_4g33391 FvH4_4g33391
malus_domestica	MD13G1019300.v1.1 MD13G1041300.v1.1 MD16G1017200.v1.1
prunus_persica	Prupe.1G334600_v2.0.a1 Prupe.1G334600_v2.0.a1
pyrus_communis	pycom13g01640 pycom13g03560 pycom13g03580 pycom16g01590
rosa_chinensis	RchiOBHm_Chr4g0442681 RchiOBHm_Chr4g0442701
rosa_laevigata	RLG00000005990 RLG00000005992
rosa_multiflora	Rmu_ssc0000204.1_g000024 Rmu_ssc0000204.1_g000026
rosa_roxburghii	Rroxscaffold_5G00383490 Rroxscaffold_5G00383510
rosa_rugosa	Rorug04G0342200 Rorug04G0342300
rosa_samantha	Rh4AG394700 Rh4AG394900 Rh4BG407600 Rh4CG423000 Rh4CG423600 Rh4DG401700 Rh4DG401900
rosa_wichuraiana	Rw4G034110 Rw4G034130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	735, 1929
AarI	CACCTGC	2 cut(s)	1874, 2071
Acc36I	ACCTGC	3 cut(s)	1012, 1874, 2071
AccB7I	CCANNNNNTGG	4 cut(s)	1479, 2269, 2401, 2615
AccI	GTMKAC	2 cut(s)	1766, 2601
AciI	CCGC	1 cut(s)	2974
AclWI	GGATC	4 cut(s)	920, 933, 1625, 2915
AcoI	YGGCCR	2 cut(s)	113, 117
AcsI	RAATTY	4 cut(s)	292, 721, 1298, 1593
AcuI	CTGAAG	3 cut(s)	18, 378, 419
AcvI	CACGTG	1 cut(s)	482
AfaI	GTAC	9 cut(s)	258, 1037, 1101, 1266, 1818, 1894, 2468, 3134, 3263
AjnI	CCWGG	4 cut(s)	1439, 2215, 2380, 3029
AjuI	GAANNNNNNNTTGG	2 cut(s)	2305, 2337
AleI	CACNNNNGTG	1 cut(s)	2217
Alw21I	GWGCWC	1 cut(s)	526
Alw26I	GTCTC	1 cut(s)	1162
AlwI	GGATC	4 cut(s)	920, 933, 1625, 2915
AlwNI	CAGNNNCTG	1 cut(s)	2921
Ama87I	CYCGRG	1 cut(s)	2369
AoxI	GGCC	5 cut(s)	113, 117, 890, 2303, 3027
ApeKI	GCWGC	3 cut(s)	312, 1388, 1811
ApoI	RAATTY	4 cut(s)	292, 721, 1298, 1593
ArsI	GACNNNNNNTTYG	4 cut(s)	865, 897, 2709, 2741
Asp700I	GAANNNNTTC	3 cut(s)	1302, 1458, 3058
AspS9I	GGNCC	8 cut(s)	244, 627, 799, 890, 1142, 2001, 2365, 3027
AsuHPI	GGTGA	6 cut(s)	50, 175, 1898, 2231, 2746, 2956
AvaI	CYCGRG	1 cut(s)	2369
AvaII	GGWCC	6 cut(s)	244, 627, 799, 1142, 2001, 2365
AxyI	CCTNAGG	2 cut(s)	1020, 1146
BamHI	GGATCC	1 cut(s)	925
BanII	GRGCYC	2 cut(s)	526, 2561
BbrPI	CACGTG	1 cut(s)	482
BbsI	GAAGAC	1 cut(s)	14
Bbv12I	GWGCWC	1 cut(s)	526
BbvCI	CCTCAGC	1 cut(s)	3088
BbvI	GCAGC	3 cut(s)	299, 1375, 1823
BceAI	ACGGC	4 cut(s)	128, 369, 1335, 3280
BcgI	CGANNNNNNTGC	2 cut(s)	2695, 2729
BciT130I	CCWGG	4 cut(s)	1441, 2217, 2382, 3031
BcoDI	GTCTC	1 cut(s)	1162
BfaI	CTAG	8 cut(s)	201, 965, 1274, 1700, 1709, 2051, 3024, 3245
BfmI	CTRYAG	5 cut(s)	819, 1005, 1881, 2424, 2598
BfuAI	ACCTGC	3 cut(s)	1012, 1874, 2071
BglII	AGATCT	1 cut(s)	793
BisI	GCNGC	3 cut(s)	313, 1389, 1812
BlpI	GCTNAGC	1 cut(s)	174
BlsI	GCNGC	3 cut(s)	314, 1390, 1813
BmcAI	AGTACT	1 cut(s)	2468
Bme1390I	CCNGG	4 cut(s)	1441, 2217, 2382, 3031
Bme18I	GGWCC	6 cut(s)	244, 627, 799, 1142, 2001, 2365
BmeT110I	CYCGRG	1 cut(s)	2369
BmgT120I	GGNCC	8 cut(s)	244, 627, 799, 890, 1142, 2001, 2365, 3027
BmiI	GGNNCC	5 cut(s)	801, 927, 1414, 2366, 2367
BmrFI	CCNGG	4 cut(s)	1441, 2217, 2382, 3031
BmrI	ACTGGG	1 cut(s)	1489
BmsI	GCATC	7 cut(s)	481, 540, 1950, 1988, 2836, 2968, 2974
BmuI	ACTGGG	1 cut(s)	1489
BpiI	GAAGAC	1 cut(s)	14
BplI	GAGNNNNNCTC	2 cut(s)	755, 787
Bpu10I	CCTNAGC	2 cut(s)	195, 3088
Bpu1102I	GCTNAGC	1 cut(s)	174
BpuEI	CTTGAG	1 cut(s)	1889
Bsa29I	ATCGAT	1 cut(s)	1194
BsaAI	YACGTR	1 cut(s)	482
BsaJI	CCNNGG	3 cut(s)	2067, 2215, 3173
BsaWI	WCCGGW	1 cut(s)	238
Bse118I	RCCGGY	2 cut(s)	115, 1063
Bse1I	ACTGG	7 cut(s)	165, 903, 1177, 1185, 1484, 2620, 3055
Bse21I	CCTNAGG	2 cut(s)	1020, 1146
Bse3DI	GCAATG	4 cut(s)	2043, 2559, 2713, 2742
BseBI	CCWGG	4 cut(s)	1441, 2217, 2382, 3031
BseCI	ATCGAT	1 cut(s)	1194
BseDI	CCNNGG	3 cut(s)	2067, 2215, 3173
BseGI	GGATG	8 cut(s)	607, 1353, 1899, 2051, 2308, 2768, 2983, 3112
BseMI	GCAATG	4 cut(s)	2043, 2559, 2713, 2742
BseMII	CTCAG	6 cut(s)	165, 1011, 1137, 1326, 1649, 3102
BseNI	ACTGG	7 cut(s)	165, 903, 1177, 1185, 1484, 2620, 3055
BseRI	GAGGAG	4 cut(s)	516, 1241, 1405, 1874
BseX3I	CGGCCG	1 cut(s)	113
BseXI	GCAGC	3 cut(s)	299, 1375, 1823
BseYI	CCCAGC	2 cut(s)	2361, 2413
Bsh1285I	CGRYCG	1 cut(s)	116
BshFI	GGCC	5 cut(s)	115, 119, 892, 2305, 3029
BshVI	ATCGAT	1 cut(s)	1194
BsiEI	CGRYCG	1 cut(s)	116
BsiHKAI	GWGCWC	1 cut(s)	526
BsiHKCI	CYCGRG	1 cut(s)	2369
BsiSI	CCGG	4 cut(s)	116, 239, 1064, 3063
BslFI	GGGAC	3 cut(s)	590, 785, 2378
BsmAI	GTCTC	1 cut(s)	1162
BsmFI	GGGAC	3 cut(s)	590, 785, 2378
BsnI	GGCC	5 cut(s)	115, 119, 892, 2305, 3029
BsoBI	CYCGRG	1 cut(s)	2369
Bsp1286I	GDGCHC	2 cut(s)	526, 2561
Bsp1407I	TGTACA	2 cut(s)	1816, 3132
Bsp143I	GATC	8 cut(s)	218, 793, 925, 1630, 1783, 2332, 2712, 2907
Bsp1720I	GCTNAGC	1 cut(s)	174
Bsp19I	CCATGG	1 cut(s)	3173
BspACI	CCGC	1 cut(s)	2974
BspANI	GGCC	5 cut(s)	115, 119, 892, 2305, 3029
BspCNI	CTCAG	6 cut(s)	166, 1012, 1138, 1325, 1650, 3101
BspDI	ATCGAT	1 cut(s)	1194
BspLI	GGNNCC	5 cut(s)	801, 927, 1414, 2366, 2367
BspMAI	CTGCAG	3 cut(s)	823, 1009, 1885
BspMI	ACCTGC	3 cut(s)	1012, 1874, 2071
BspPI	GGATC	4 cut(s)	920, 933, 1625, 2915
BspQI	GCTCTTC	1 cut(s)	2026
BsrDI	GCAATG	4 cut(s)	2043, 2559, 2713, 2742
BsrFI	RCCGGY	2 cut(s)	115, 1063
BsrGI	TGTACA	2 cut(s)	1816, 3132
BsrI	ACTGG	7 cut(s)	165, 903, 1177, 1185, 1484, 2620, 3055
BssAI	RCCGGY	2 cut(s)	115, 1063
BssECI	CCNNGG	3 cut(s)	2067, 2215, 3173
BssMI	GATC	8 cut(s)	218, 793, 925, 1630, 1783, 2332, 2712, 2907
BssT1I	CCWWGG	2 cut(s)	2067, 3173
Bst2UI	CCWGG	4 cut(s)	1441, 2217, 2382, 3031
Bst4CI	ACNGT	7 cut(s)	18, 153, 2165, 2276, 2425, 2524, 2646
Bst6I	CTCTTC	4 cut(s)	1764, 2026, 2457, 2784
BstAPI	GCANNNNNTGC	1 cut(s)	1385
BstAUI	TGTACA	2 cut(s)	1816, 3132
BstBAI	YACGTR	1 cut(s)	482
BstC8I	GCNNGC	8 cut(s)	117, 1065, 2387, 2577, 2621, 2625, 3225, 3269
BstDSI	CCRYGG	1 cut(s)	3173
BstF5I	GGATG	8 cut(s)	607, 1353, 1899, 2051, 2308, 2768, 2983, 3112
BstKTI	GATC	8 cut(s)	221, 796, 928, 1633, 1786, 2335, 2715, 2910
BstMAI	GTCTC	1 cut(s)	1162
BstMBI	GATC	8 cut(s)	218, 793, 925, 1630, 1783, 2332, 2712, 2907
BstMCI	CGRYCG	1 cut(s)	116
BstMWI	GCNNNNNNNGC	9 cut(s)	403, 1173, 1385, 1535, 1862, 2157, 2565, 2581, 3229
BstNI	CCWGG	4 cut(s)	1441, 2217, 2382, 3031
BstNSI	RCATGY	5 cut(s)	308, 555, 1672, 1716, 2953
BstSCI	CCNGG	4 cut(s)	1439, 2215, 2380, 3029
BstSFI	CTRYAG	5 cut(s)	819, 1005, 1881, 2424, 2598
BstV1I	GCAGC	3 cut(s)	299, 1375, 1823
BstV2I	GAAGAC	1 cut(s)	14
BstX2I	RGATCY	2 cut(s)	793, 925
BstYI	RGATCY	2 cut(s)	793, 925
BstZI	CGGCCG	1 cut(s)	113
Bsu15I	ATCGAT	1 cut(s)	1194
Bsu36I	CCTNAGG	2 cut(s)	1020, 1146
BsuRI	GGCC	5 cut(s)	115, 119, 892, 2305, 3029
BsuTUI	ATCGAT	1 cut(s)	1194
BtgI	CCRYGG	1 cut(s)	3173
BtgZI	GCGATG	1 cut(s)	3081
BtsCI	GGATG	8 cut(s)	607, 1353, 1899, 2051, 2308, 2768, 2983, 3112
BtsI	GCAGTG	2 cut(s)	489, 1014
BtsIMutI	CAGTG	8 cut(s)	372, 489, 630, 896, 1014, 1192, 1655, 2520
BveI	ACCTGC	3 cut(s)	1012, 1874, 2071
Cac8I	GCNNGC	8 cut(s)	117, 1065, 2387, 2577, 2621, 2625, 3225, 3269
CaiI	CAGNNNCTG	1 cut(s)	2921
Cfr10I	RCCGGY	2 cut(s)	115, 1063
Cfr13I	GGNCC	8 cut(s)	244, 627, 799, 890, 1142, 2001, 2365, 3027
ClaI	ATCGAT	1 cut(s)	1194
Csp6I	GTAC	9 cut(s)	257, 1036, 1100, 1265, 1817, 1893, 2467, 3133, 3262
CviQI	GTAC	9 cut(s)	257, 1036, 1100, 1265, 1817, 1893, 2467, 3133, 3262
DpnI	GATC	8 cut(s)	220, 795, 927, 1632, 1785, 2334, 2714, 2909
DpnII	GATC	8 cut(s)	218, 793, 925, 1630, 1783, 2332, 2712, 2907
DraI	TTTAAA	2 cut(s)	715, 853
EaeI	YGGCCR	2 cut(s)	113, 117
EagI	CGGCCG	1 cut(s)	113
Eam1104I	CTCTTC	4 cut(s)	1764, 2026, 2457, 2784
EarI	CTCTTC	4 cut(s)	1764, 2026, 2457, 2784
Ecl136II	GAGCTC	1 cut(s)	524
EclXI	CGGCCG	1 cut(s)	113
Eco130I	CCWWGG	2 cut(s)	2067, 3173
Eco147I	AGGCCT	1 cut(s)	2305
Eco24I	GRGCYC	2 cut(s)	526, 2561
Eco32I	GATATC	2 cut(s)	844, 1192
Eco47I	GGWCC	6 cut(s)	244, 627, 799, 1142, 2001, 2365
Eco52I	CGGCCG	1 cut(s)	113
Eco53kI	GAGCTC	1 cut(s)	524
Eco57I	CTGAAG	3 cut(s)	18, 378, 419
Eco72I	CACGTG	1 cut(s)	482
Eco81I	CCTNAGG	2 cut(s)	1020, 1146
Eco88I	CYCGRG	1 cut(s)	2369
EcoICRI	GAGCTC	1 cut(s)	524
EcoO109I	RGGNCCY	2 cut(s)	2365, 3027
EcoRI	GAATTC	1 cut(s)	1298
EcoRII	CCWGG	4 cut(s)	1439, 2215, 2380, 3029
EcoRV	GATATC	2 cut(s)	844, 1192
EcoT14I	CCWWGG	2 cut(s)	2067, 3173
EcoT22I	ATGCAT	3 cut(s)	282, 2142, 2570
EcoT38I	GRGCYC	2 cut(s)	526, 2561
ErhI	CCWWGG	2 cut(s)	2067, 3173
FaqI	GGGAC	3 cut(s)	590, 785, 2378
FauI	CCCGC	1 cut(s)	2967
FauNDI	CATATG	3 cut(s)	838, 1324, 2265
FblI	GTMKAC	2 cut(s)	1766, 2601
Fnu4HI	GCNGC	3 cut(s)	313, 1389, 1812
FokI	GGATG	8 cut(s)	614, 1360, 1886, 2058, 2295, 2755, 2990, 3099
FriOI	GRGCYC	2 cut(s)	526, 2561
FseI	GGCCGGCC	1 cut(s)	119
Fsp4HI	GCNGC	3 cut(s)	313, 1389, 1812
FspBI	CTAG	8 cut(s)	201, 965, 1274, 1700, 1709, 2051, 3024, 3245
GluI	GCNGC	3 cut(s)	313, 1389, 1812
GsaI	CCCAGC	2 cut(s)	2365, 2417
HaeIII	GGCC	5 cut(s)	115, 119, 892, 2305, 3029
HapII	CCGG	4 cut(s)	116, 239, 1064, 3063
HindIII	AAGCTT	1 cut(s)	2573
HpaII	CCGG	4 cut(s)	116, 239, 1064, 3063
HphI	GGTGA	6 cut(s)	50, 175, 1898, 2231, 2746, 2956
Hpy188I	TCNGA	9 cut(s)	105, 420, 627, 1032, 1315, 1507, 1687, 2717, 3281
HpyAV	CCTTC	7 cut(s)	42, 80, 699, 1561, 2731, 2782, 3010
HpyCH4III	ACNGT	7 cut(s)	18, 153, 2165, 2276, 2425, 2524, 2646
HpyCH4IV	ACGT	2 cut(s)	481, 3151
HpyF10VI	GCNNNNNNNGC	9 cut(s)	403, 1173, 1385, 1535, 1862, 2157, 2565, 2581, 3229
HpySE526I	ACGT	2 cut(s)	481, 3151
KflI	GGGWCCC	1 cut(s)	2365
KroI	GCCGGC	2 cut(s)	115, 1063
KroNI	GCCGGC	2 cut(s)	117, 1065
Kzo9I	GATC	8 cut(s)	218, 793, 925, 1630, 1783, 2332, 2712, 2907
LguI	GCTCTTC	1 cut(s)	2026
LmnI	GCTCC	5 cut(s)	521, 529, 1418, 1968, 2434
Lsp1109I	GCAGC	3 cut(s)	299, 1375, 1823
LweI	GCATC	7 cut(s)	481, 540, 1950, 1988, 2836, 2968, 2974
MaeI	CTAG	8 cut(s)	201, 965, 1274, 1700, 1709, 2051, 3024, 3245
MaeII	ACGT	2 cut(s)	481, 3151
MaeIII	GTNAC	8 cut(s)	408, 485, 1468, 1607, 2256, 2443, 3103, 3152
MalI	GATC	8 cut(s)	220, 795, 927, 1632, 1785, 2334, 2714, 2909
MboI	GATC	8 cut(s)	218, 793, 925, 1630, 1783, 2332, 2712, 2907
MfeI	CAATTG	2 cut(s)	2448, 2592
MflI	RGATCY	2 cut(s)	793, 925
MhlI	GDGCHC	2 cut(s)	526, 2561
MlyI	GAGTC	2 cut(s)	671, 1497
MmeI	TCCRAC	4 cut(s)	1658, 1971, 2419, 2874
Mph1103I	ATGCAT	3 cut(s)	282, 2142, 2570
MroNI	GCCGGC	2 cut(s)	115, 1063
MroXI	GAANNNNTTC	3 cut(s)	1302, 1458, 3058
MseI	TTAA	8 cut(s)	57, 714, 852, 1152, 1476, 1827, 1850, 2234
MslI	CAYNNNNRTG	4 cut(s)	673, 2217, 2313, 2999
MspA1I	CMGCKG	4 cut(s)	1529, 1814, 2627, 2760
MspI	CCGG	4 cut(s)	116, 239, 1064, 3063
MspR9I	CCNGG	4 cut(s)	1441, 2217, 2382, 3031
MunI	CAATTG	2 cut(s)	2448, 2592
MvaI	CCWGG	4 cut(s)	1441, 2217, 2382, 3031
MwoI	GCNNNNNNNGC	9 cut(s)	403, 1173, 1385, 1535, 1862, 2157, 2565, 2581, 3229
NaeI	GCCGGC	2 cut(s)	117, 1065
NcoI	CCATGG	1 cut(s)	3173
NdeI	CATATG	3 cut(s)	838, 1324, 2265
NdeII	GATC	8 cut(s)	218, 793, 925, 1630, 1783, 2332, 2712, 2907
NgoMIV	GCCGGC	2 cut(s)	115, 1063
NlaIV	GGNNCC	5 cut(s)	801, 927, 1414, 2366, 2367
NmeAIII	GCCGAG	1 cut(s)	3208
NmuCI	GTSAC	4 cut(s)	485, 2443, 3103, 3152
NsiI	ATGCAT	3 cut(s)	282, 2142, 2570
NspI	RCATGY	5 cut(s)	308, 555, 1672, 1716, 2953
OliI	CACNNNNGTG	1 cut(s)	2217
PaqCI	CACCTGC	2 cut(s)	1874, 2071
PceI	AGGCCT	1 cut(s)	2305
PciSI	GCTCTTC	1 cut(s)	2026
PdiI	GCCGGC	2 cut(s)	117, 1065
PdmI	GAANNNNTTC	3 cut(s)	1302, 1458, 3058
PflMI	CCANNNNNTGG	4 cut(s)	1479, 2269, 2401, 2615
PkrI	GCNGC	3 cut(s)	314, 1390, 1813
PleI	GAGTC	2 cut(s)	670, 1496
PmaCI	CACGTG	1 cut(s)	482
PmlI	CACGTG	1 cut(s)	482
PpsI	GAGTC	2 cut(s)	670, 1496
Ppu21I	YACGTR	1 cut(s)	482
PpuMI	RGGWCCY	1 cut(s)	2365
PsiI	TTATAA	2 cut(s)	735, 1929
Psp124BI	GAGCTC	1 cut(s)	526
Psp5II	RGGWCCY	1 cut(s)	2365
Psp6I	CCWGG	4 cut(s)	1439, 2215, 2380, 3029
PspCI	CACGTG	1 cut(s)	482
PspFI	CCCAGC	2 cut(s)	2361, 2413
PspGI	CCWGG	4 cut(s)	1439, 2215, 2380, 3029
PspN4I	GGNNCC	5 cut(s)	801, 927, 1414, 2366, 2367
PspPI	GGNCC	8 cut(s)	244, 627, 799, 890, 1142, 2001, 2365, 3027
PspPPI	RGGWCCY	1 cut(s)	2365
PsrI	GAACNNNNNNTAC	2 cut(s)	1092, 1124
PstI	CTGCAG	3 cut(s)	823, 1009, 1885
PstNI	CAGNNNCTG	1 cut(s)	2921
PsuI	RGATCY	2 cut(s)	793, 925
PvuII	CAGCTG	4 cut(s)	1529, 1814, 2627, 2760
RigI	GGCCGGCC	1 cut(s)	119
RsaI	GTAC	9 cut(s)	258, 1037, 1101, 1266, 1818, 1894, 2468, 3134, 3263
RsaNI	GTAC	9 cut(s)	257, 1036, 1100, 1265, 1817, 1893, 2467, 3133, 3262
RseI	CAYNNNNRTG	4 cut(s)	673, 2217, 2313, 2999
SacI	GAGCTC	1 cut(s)	526
SapI	GCTCTTC	1 cut(s)	2026
SaqAI	TTAA	8 cut(s)	57, 714, 852, 1152, 1476, 1827, 1850, 2234
SatI	GCNGC	3 cut(s)	313, 1389, 1812
Sau3AI	GATC	8 cut(s)	218, 793, 925, 1630, 1783, 2332, 2712, 2907
Sau96I	GGNCC	8 cut(s)	244, 627, 799, 890, 1142, 2001, 2365, 3027
SbfI	CCTGCAGG	1 cut(s)	823
ScaI	AGTACT	1 cut(s)	2468
SchI	GAGTC	2 cut(s)	671, 1497
ScrFI	CCNGG	4 cut(s)	1441, 2217, 2382, 3031
SdaI	CCTGCAGG	1 cut(s)	823
SduI	GDGCHC	2 cut(s)	526, 2561
SfaNI	GCATC	7 cut(s)	481, 540, 1950, 1988, 2836, 2968, 2974
SfcI	CTRYAG	5 cut(s)	819, 1005, 1881, 2424, 2598
SinI	GGWCC	6 cut(s)	244, 627, 799, 1142, 2001, 2365
SmiMI	CAYNNNNRTG	4 cut(s)	673, 2217, 2313, 2999
SmlI	CTYRAG	1 cut(s)	1904
SmoI	CTYRAG	1 cut(s)	1904
Sse8387I	CCTGCAGG	1 cut(s)	823
SseBI	AGGCCT	1 cut(s)	2305
SsiI	CCGC	1 cut(s)	2974
SspI	AATATT	1 cut(s)	2928
SspMI	CTAG	8 cut(s)	201, 965, 1274, 1700, 1709, 2051, 3024, 3245
SstI	GAGCTC	1 cut(s)	526
StuI	AGGCCT	1 cut(s)	2305
StyD4I	CCNGG	4 cut(s)	1439, 2215, 2380, 3029
StyI	CCWWGG	2 cut(s)	2067, 3173
TaaI	ACNGT	7 cut(s)	18, 153, 2165, 2276, 2425, 2524, 2646
TaiI	ACGT	2 cut(s)	484, 3154
TaqI	TCGA	2 cut(s)	1194, 1597
TatI	WGTACW	4 cut(s)	1816, 1892, 2466, 3132
Tru1I	TTAA	8 cut(s)	57, 714, 852, 1152, 1476, 1827, 1850, 2234
Tru9I	TTAA	8 cut(s)	57, 714, 852, 1152, 1476, 1827, 1850, 2234
TscAI	CASTG	8 cut(s)	372, 496, 637, 903, 1014, 1192, 1662, 2527
TseFI	GTSAC	4 cut(s)	485, 2443, 3103, 3152
TseI	GCWGC	3 cut(s)	312, 1388, 1811
Tsp45I	GTSAC	4 cut(s)	485, 2443, 3103, 3152
TspGWI	ACGGA	1 cut(s)	2043
TspRI	CASTG	8 cut(s)	372, 496, 637, 903, 1014, 1192, 1662, 2527
Van91I	CCANNNNNTGG	4 cut(s)	1479, 2269, 2401, 2615
VpaK11BI	GGWCC	6 cut(s)	244, 627, 799, 1142, 2001, 2365
XapI	RAATTY	4 cut(s)	292, 721, 1298, 1593
XbaI	TCTAGA	2 cut(s)	2050, 3244
XceI	RCATGY	5 cut(s)	308, 555, 1672, 1716, 2953
XmiI	GTMKAC	2 cut(s)	1766, 2601
XmnI	GAANNNNTTC	3 cut(s)	1302, 1458, 3058
XspI	CTAG	8 cut(s)	201, 965, 1274, 1700, 1709, 2051, 3024, 3245
ZrmI	AGTACT	1 cut(s)	2468
Zsp2I	ATGCAT	3 cut(s)	282, 2142, 2570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.