Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0003605

Physical Location & Seq

Genomic Coordinates Reverse (-)

70025677 .. 70030737

Gene Structure 5061 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG394900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3381 bp

ATGGAGAAGACAATAAAATTACATGGATTCCCTTCAGGTGAATCTGCTGAAAAAATTAAGGTATTTTTGGAGAAACATACAGGAGAAGGAAGTGTTTTTGCTCTTAAATTACGGCCGGCCAAAGGGGGGAGATTCTATGCTTATATACAGTTTGAGTCCACCAGTCAGGCTGAGTTTATCACCTCTTTGGCTAACGCTAGGGCTAGGCTGTGGTATGGGAGATCCTATTTGAACTTTTATGCAGCGGACCATGATATTGTACCAAAGCCAAGAACTGTAATGCATAGCTTGCAAAATTTAGAATTGCATGTTGGCTGCCAGGTCGCAAATGATAAGTTGTCTGTTTTTTGGAGAACGGCTGAAGTTTCAGTGGACTTTGGGACTGGAACGCGGAAATTCCAATTTCGGCTGTTATATCATCAGAAGTTATATAGACTTCAGCTTTCGTATGAGAACATCTGGCAAATTGAGTTGCATCGTCCACGTGGTCGCACTGCAAAATATCTTGTCATTCAGTTATATGGAGCTCCTCGCATCTACCAACAAGAAGAAGCATGTTCTTCTGGAAATGTATATGATGACCCTCTTATGAACTACTTTAGGGATGTCCCTGATGACCAATGGGTTCGGACCACTGATTTCACTCCACGAAGCTGTATTGGGGAGTCATCTTCATTATGTTTAGAGCTTCCTTCTGGTCGCCAACTTCCTGATTTTGAAGAAAATTTTGCTCATTATAAGGAGAGTGATGGGCAATTTATCTTGGAGAATGGCTCAACTTTCTCTTGCAACCGAGATCTGGTCCCTATTGTTGGTTCTCCTGCAGGGGTTGATTTGCCATATGATATCTTGTTTAAAATAAACTCGCTGGTTCAAATGGGTTGTCTGTCAGGGCCGACACTTGATAATAGGTTTTATAGGCTGGTGGATCCACGAAGAATAACTCGTTCCTGTATAGAGTATGCCCTAGATAAATTATCTAATTTGAAAAAGAGCTGTTATGAACCTGCGGTGTGGCTTAATGAGGAGTACCGGAAGTACCTGACAACAAAGAAACCTCCAAAGCCGGCACTTGTCTCCTTAGATTCTGGTTTGGTATATGTACGGAGGGTTCAAATAACACCATCTAAAGTGTATTTTTCTGGTCCTGAGGTTAATGTCTCAAATCGCATACTACGCCAGTATTCCAGTGATATCGATAACTTTCTTCGTGTTTCATTTGTTGATGAGGAGATGGAAAATCTCTATTCAACAGATTTGTCCCCCCGTACATCTACTAGAAAAACTCGCATCTACAACAGAGTTCTTTCTATTCTCAGAAACGGCATAGTAATTGGAGAAAAGAAATTTGAGTTTCTTGCATTCTCATCAAGTCAATTGCAAGAGAATTCATTGTGGATGTTTTCTTCAACCTCTAATGTTAGTGCTGATAAGATAAGAGCAGGGATGGGGGATTTTCGCAAGATAAGAAATGTGGCAAAGTATGCTGCCAGATTGGGTCAATCTTTTGGCTCTTCTACTGAAACTCTAAGTGTTGGCAGGAATGAGATTGAAGTTATTCCTGATGTAACAGTTAATTGGGGTGGAGACAGATATATGTTCTCTGATGGGATTGGGAAAATATCAGCTGATTTTGCAAGGAGAGTAGCCTTCAAATATGGCTATAAAGCGTTCACACCATCTGCATTTCAAATTCGATATGGTGGTTACAAAGGTGTTGTCGCTGTTGATCCAACCTCGTCAATGAAATTATCACTGAGAAAGAGCATGTCTAAGTATGATTCTGAAAACACAAAGCTAGATGTTCTAGCATGTAGCAAGTTTCAGCCTTGTTTTTTGAATCGTCAGGTGATAACTCTTCTGTCTACACTTGGAGTTCAAGATCATGTTTTCTTGAAAAAGCAAAGAGCAGCTGTACAACAACTTAATGCCATATTGACTGACCCATTAAAAGCAGGGGAGGCTCTTGATTTGATGTCTGCGGGTGAGAGTACAAACATCCTCAAGGAACTGCTGATGTGTGGTTATAAACCTGATGTTGAACCATTCCTTTCAATGATGCTCCAAACATTTCGGGCATCAAAGTTGTTGGAATTGAGGACCAAAACAAGAATCTTTATCCCAGATGGAAGAGCAATGATGGGATGTCTAGACGAAACAAGAACCTTGGAATATGGGCAGGTGTTTGTGCAAATCTGTGGAAACAGACGAAGGCAGTTATTTGATGATTCATTCATGCATAGTGGAAGCTCATCAGGCAAAACAGTTATTGAACGAAAGGTGGTTGTTGCAAAGAACCCATGTTTACACCCCGGTGATGTGCGTGTCTTAAGGGCTGTGAATGTGCCGGAGTTGCAACATATGGTGGACTGTGTGGTATTTCCACAAAAAGGACCAAGGCCTCATCCAAATGAATGTTCTGGAAGTGATCTTGATGGAGATATTTACTTTGTTTGCTGGGACCCTGAGTTGATTCCTCGCAAGCAAATCCAACCTATGGATTATACCCCAGCACCAACTATAGAGATGGATCATGATGTCACAATTGAGGAAGTAGAAGAGCACTTTGTGAATTACATACTCAATGATAGTTTGGGGAGAATTGCCAATGCCCACACTGTTTTTGCTGACAGAGAGCATGATAAAGCAATGAGCCGTCCGTGCATAGAGCTCGCGAAGCTACATTCAATTGCTGTAGACTTTCCAAAAACTGGCGTGCCAGCTGTGAGACCAGAGGAACTGTATGTCAAGGAATATCCAGATTTCATGGAGAAGACCGACAAAAGCACCTATCTCTCAAGCAATGTGATCGGACAGCTTTTTCGTGAGGTGAAGAACATTGCACCCCATGACAGCTGTATTACATCCTTCACTCATCAAGTGGCGACAAAATCCTATGACCCTGACATGGAGGTTGATGGCTTTGAGGATTACCTTGAAGATGCTTTCTATTACAAAGGCAATTATGATTACAAATTGGGAAACCTGTTGGATTACTATGGGATCAAGACAGAGGCTGAAATATTGAGTGGGGGTATTATGAGAATGTCAAAATCTTTCACCAAGGAGCGGGATGCAGACGCTATAAACAGGGCTGTGAGGTCATTGAGGAAGGAAGCTAGGACCTGGTTCGATGAGAAAGGAACTGGAATAGATTCTGGAGTTGATGGTGTCTATGCAAAAGCTTCAGCTTGGTACCATGTCACATATCATCCCAATTATTTTGGTTTGTACAATGAGGGAATGAAACGTGACCATTTTATCAGCTTCCCGTGGTGTGTGTATGACAAGCTAGTTCACATAAAAAAGGACAAAGTAAAGCAAGCTCGGCGCAGATCATCTCTAGAAAGTCAGTTCAGGTACGGCTTGCATTTGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009615 GO:0009719 GO:0009725 GO:0009751 GO:0009892 GO:0009987 GO:0010025 GO:0010033 GO:0010166 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0043331 GO:0044237 GO:0044238 GO:0046483 GO:0046677 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060147 GO:0060148 GO:0060255 GO:0060968 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:1901360 GO:1901568 GO:1901570 GO:1901576 GO:1901698 GO:1901699 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RdRP

Protein Analysis

1126

Amino Acids

128.57

Weight (kDa)

8.47

Isoelectric Point (pI)

40.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_RdRP1_2	PF26250	4 - 84	1e-14	RdRP1/2, RRM domain
PH_RDR2	PF24823	102 - 253	2.5e-44	RDR2 PH-like domain
RdRP_helical	PF26252	274 - 348	2.5e-12	RNA dependent RNA polymerase, helical domain
RdRP	PF05183	373 - 944	2.5e-194	RNA dependent RNA polymerase
RdRP_head	PF26253	965 - 1113	4.2e-47	RdRP, head domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0003605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14790
fragaria_vesca	FvH4_4g33391 FvH4_4g33391 FvH4_4g33391 FvH4_4g33391 FvH4_4g33391 FvH4_4g33391
malus_domestica	MD13G1019300.v1.1 MD13G1041300.v1.1 MD16G1017200.v1.1
prunus_persica	Prupe.1G334600_v2.0.a1 Prupe.1G334600_v2.0.a1
pyrus_communis	pycom13g01640 pycom13g03560 pycom13g03580 pycom16g01590
rosa_chinensis	RchiOBHm_Chr4g0442681 RchiOBHm_Chr4g0442701
rosa_laevigata	RLG00000005990 RLG00000005992
rosa_multiflora	Rmu_ssc0000204.1_g000024 Rmu_ssc0000204.1_g000026
rosa_roxburghii	Rroxscaffold_5G00383490 Rroxscaffold_5G00383510
rosa_rugosa	Rorug04G0342200 Rorug04G0342300
rosa_samantha	Rh4AG394700 Rh4AG394900 Rh4BG407600 Rh4CG423000 Rh4CG423600 Rh4DG401700 Rh4DG401900
rosa_wichuraiana	Rw4G034110 Rw4G034130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	738, 2028
AarI	CACCTGC	1 cut(s)	2170
Acc36I	ACCTGC	2 cut(s)	1015, 2170
Acc65I	GGTACC	1 cut(s)	3195
AccB1I	GGYRCC	1 cut(s)	3195
AccB7I	CCANNNNNTGG	2 cut(s)	2497, 2711
AccBSI	CCGCTC	1 cut(s)	3070
AccI	GTMKAC	2 cut(s)	1865, 2697
AccII	CGCG	2 cut(s)	391, 2675
AciI	CCGC	5 cut(s)	245, 391, 1010, 1982, 3070
AclWI	GGATC	6 cut(s)	216, 923, 936, 1724, 2538, 3011
AcoI	YGGCCR	2 cut(s)	113, 117
AcsI	RAATTY	6 cut(s)	295, 395, 724, 1346, 1387, 1692
AcuI	CTGAAG	4 cut(s)	18, 381, 422, 3171
AcvI	CACGTG	1 cut(s)	485
AdeI	CACNNNGTG	1 cut(s)	2569
AfiI	CCNNNNNNNGG	9 cut(s)	122, 126, 799, 812, 2390, 2497, 2711, 2908, 3069
AflII	CTTAAG	1 cut(s)	2329
AjnI	CCWGG	2 cut(s)	318, 3125
AjuI	GAANNNNNNNTTGG	4 cut(s)	294, 326, 2401, 2433
AleI	CACNNNNGTG	1 cut(s)	2313
Alw21I	GWGCWC	3 cut(s)	529, 2565, 2673
Alw26I	GTCTC	4 cut(s)	1081, 1165, 1581, 2722
AlwI	GGATC	6 cut(s)	216, 923, 936, 1724, 2538, 3011
AlwNI	CAGNNNCTG	1 cut(s)	3017
AoxI	GGCC	4 cut(s)	113, 117, 893, 2399
ApeKI	GCWGC	4 cut(s)	242, 315, 1487, 1910
ApoI	RAATTY	6 cut(s)	295, 395, 724, 1346, 1387, 1692
ArsI	GACNNNNNNTTYG	6 cut(s)	868, 900, 1704, 1736, 2805, 2837
Asp700I	GAANNNNTTC	2 cut(s)	1557, 3154
Asp718I	GGTACC	1 cut(s)	3195
AspLEI	GCGC	1 cut(s)	3333
AspS9I	GGNCC	9 cut(s)	247, 630, 802, 893, 1145, 2100, 2393, 2461, 3123
AsuC2I	CCSGG	1 cut(s)	2313
AsuHPI	GGTGA	7 cut(s)	50, 172, 1861, 1997, 2327, 2842, 3052
AvaII	GGWCC	8 cut(s)	247, 630, 802, 1145, 2100, 2393, 2461, 3123
AxyI	CCTNAGG	1 cut(s)	1149
BamHI	GGATCC	1 cut(s)	928
BanI	GGYRCC	1 cut(s)	3195
BanII	GRGCYC	2 cut(s)	529, 2673
BbrPI	CACGTG	1 cut(s)	485
BbsI	GAAGAC	2 cut(s)	14, 2780
Bbv12I	GWGCWC	3 cut(s)	529, 2565, 2673
BbvI	GCAGC	4 cut(s)	254, 302, 1474, 1922
BceAI	ACGGC	5 cut(s)	128, 372, 1339, 2640, 3379
BcgI	CGANNNNNNTGC	4 cut(s)	2653, 2687, 2791, 2825
BciT130I	CCWGG	2 cut(s)	320, 3127
BcnI	CCSGG	1 cut(s)	2313
BcoDI	GTCTC	4 cut(s)	1081, 1165, 1581, 2722
BfmI	CTRYAG	3 cut(s)	822, 2520, 2694
BfrI	CTTAAG	1 cut(s)	2329
BfuAI	ACCTGC	2 cut(s)	1015, 2170
BglII	AGATCT	1 cut(s)	796
BisI	GCNGC	4 cut(s)	243, 316, 1488, 1911
BlsI	GCNGC	4 cut(s)	244, 317, 1489, 1912
Bme1390I	CCNGG	3 cut(s)	320, 2313, 3127
Bme18I	GGWCC	8 cut(s)	247, 630, 802, 1145, 2100, 2393, 2461, 3123
BmgT120I	GGNCC	9 cut(s)	247, 630, 802, 893, 1145, 2100, 2393, 2461, 3123
BmiI	GGNNCC	5 cut(s)	804, 930, 2462, 2463, 3197
BmrFI	CCNGG	3 cut(s)	320, 2313, 3127
BmsI	GCATC	7 cut(s)	484, 543, 1299, 2049, 2087, 2932, 3064
BpiI	GAAGAC	2 cut(s)	14, 2780
BplI	GAGNNNNNCTC	2 cut(s)	758, 790
BpmI	CTGGAG	1 cut(s)	3180
BpuEI	CTTGAG	2 cut(s)	1988, 2782
BpuMI	CCSGG	1 cut(s)	2313
Bsa29I	ATCGAT	1 cut(s)	1197
BsaAI	YACGTR	1 cut(s)	485
BsaI	GGTCTC	1 cut(s)	2722
BsaJI	CCNNGG	5 cut(s)	2166, 2311, 2396, 3063, 3272
BsaWI	WCCGGW	1 cut(s)	1032
Bsc4I	CCNNNNNNNGG	9 cut(s)	122, 126, 799, 812, 2390, 2497, 2711, 2908, 3069
Bse118I	RCCGGY	2 cut(s)	115, 1066
Bse1I	ACTGG	6 cut(s)	162, 388, 1180, 1188, 2716, 3151
Bse21I	CCTNAGG	1 cut(s)	1149
Bse3DI	GCAATG	4 cut(s)	2142, 2655, 2809, 2838
BseBI	CCWGG	2 cut(s)	320, 3127
BseCI	ATCGAT	1 cut(s)	1197
BseDI	CCNNGG	5 cut(s)	2166, 2311, 2396, 3063, 3272
BseGI	GGATG	9 cut(s)	610, 1404, 1452, 1998, 2150, 2404, 2864, 3079, 3211
BseLI	CCNNNNNNNGG	9 cut(s)	122, 126, 799, 812, 2390, 2497, 2711, 2908, 3069
BseMI	GCAATG	4 cut(s)	2142, 2655, 2809, 2838
BseMII	CTCAG	5 cut(s)	162, 1140, 1330, 1748, 2457
BseNI	ACTGG	6 cut(s)	162, 388, 1180, 1188, 2716, 3151
BseRI	GAGGAG	3 cut(s)	519, 1040, 1244
BseX3I	CGGCCG	1 cut(s)	113
BseXI	GCAGC	4 cut(s)	254, 302, 1474, 1922
BseYI	CCCAGC	2 cut(s)	2457, 2509
Bsh1236I	CGCG	2 cut(s)	391, 2675
Bsh1285I	CGRYCG	1 cut(s)	116
BshFI	GGCC	4 cut(s)	115, 119, 895, 2401
BshNI	GGYRCC	1 cut(s)	3195
BshVI	ATCGAT	1 cut(s)	1197
BsiEI	CGRYCG	1 cut(s)	116
BsiHKAI	GWGCWC	3 cut(s)	529, 2565, 2673
BsiSI	CCGG	5 cut(s)	116, 1033, 1067, 2313, 2348
BslFI	GGGAC	5 cut(s)	394, 593, 788, 1246, 2474
BslI	CCNNNNNNNGG	9 cut(s)	122, 126, 799, 812, 2390, 2497, 2711, 2908, 3069
BsmAI	GTCTC	4 cut(s)	1081, 1165, 1581, 2722
BsmFI	GGGAC	5 cut(s)	394, 593, 788, 1246, 2474
BsmI	GAATGC	1 cut(s)	1361
BsnI	GGCC	4 cut(s)	115, 119, 895, 2401
Bso31I	GGTCTC	1 cut(s)	2722
Bsp1286I	GDGCHC	3 cut(s)	529, 2565, 2673
Bsp1407I	TGTACA	2 cut(s)	1915, 3231
Bsp68I	TCGCGA	1 cut(s)	2675
BspACI	CCGC	5 cut(s)	245, 391, 1010, 1982, 3070
BspANI	GGCC	4 cut(s)	115, 119, 895, 2401
BspCNI	CTCAG	5 cut(s)	163, 1141, 1329, 1749, 2458
BspDI	ATCGAT	1 cut(s)	1197
BspFNI	CGCG	2 cut(s)	391, 2675
BspHI	TCATGA	1 cut(s)	2533
BspLI	GGNNCC	5 cut(s)	804, 930, 2462, 2463, 3197
BspMAI	CTGCAG	1 cut(s)	826
BspMI	ACCTGC	2 cut(s)	1015, 2170
BspPI	GGATC	6 cut(s)	216, 923, 936, 1724, 2538, 3011
BspQI	GCTCTTC	3 cut(s)	1519, 2125, 2553
BspT107I	GGYRCC	1 cut(s)	3195
BspTI	CTTAAG	1 cut(s)	2329
BspTNI	GGTCTC	1 cut(s)	2722
BsrBI	CCGCTC	1 cut(s)	3070
BsrDI	GCAATG	4 cut(s)	2142, 2655, 2809, 2838
BsrFI	RCCGGY	2 cut(s)	115, 1066
BsrGI	TGTACA	2 cut(s)	1915, 3231
BsrI	ACTGG	6 cut(s)	162, 388, 1180, 1188, 2716, 3151
BssAI	RCCGGY	2 cut(s)	115, 1066
BssECI	CCNNGG	5 cut(s)	2166, 2311, 2396, 3063, 3272
BssT1I	CCWWGG	3 cut(s)	2166, 2396, 3063
Bst2UI	CCWGG	2 cut(s)	320, 3127
Bst4CI	ACNGT	7 cut(s)	150, 277, 1573, 2266, 2372, 2620, 2742
Bst6I	CTCTTC	4 cut(s)	1519, 1863, 2125, 2553
BstAFI	CTTAAG	1 cut(s)	2329
BstAPI	GCANNNNNTGC	2 cut(s)	289, 1484
BstAUI	TGTACA	2 cut(s)	1915, 3231
BstBAI	YACGTR	1 cut(s)	485
BstC8I	GCNNGC	9 cut(s)	117, 290, 1068, 2483, 2673, 2717, 2721, 3324, 3368
BstDEI	CTNAG	8 cut(s)	171, 1081, 1149, 1316, 1529, 1757, 1773, 2466
BstDSI	CCRYGG	1 cut(s)	3272
BstF5I	GGATG	9 cut(s)	610, 1404, 1452, 1998, 2150, 2404, 2864, 3079, 3211
BstFNI	CGCG	2 cut(s)	391, 2675
BstHHI	GCGC	1 cut(s)	3333
BstMAI	GTCTC	4 cut(s)	1081, 1165, 1581, 2722
BstMCI	CGRYCG	1 cut(s)	116
BstNI	CCWGG	2 cut(s)	320, 3127
BstNSI	RCATGY	4 cut(s)	311, 558, 1771, 1815
BstSCI	CCNGG	3 cut(s)	318, 2311, 3125
BstSFI	CTRYAG	3 cut(s)	822, 2520, 2694
BstUI	CGCG	2 cut(s)	391, 2675
BstV1I	GCAGC	4 cut(s)	254, 302, 1474, 1922
BstV2I	GAAGAC	2 cut(s)	14, 2780
BstX2I	RGATCY	3 cut(s)	221, 796, 928
BstYI	RGATCY	3 cut(s)	221, 796, 928
BstZI	CGGCCG	1 cut(s)	113
Bsu15I	ATCGAT	1 cut(s)	1197
Bsu36I	CCTNAGG	1 cut(s)	1149
BsuRI	GGCC	4 cut(s)	115, 119, 895, 2401
BsuTUI	ATCGAT	1 cut(s)	1197
BtgI	CCRYGG	1 cut(s)	3272
BtsCI	GGATG	9 cut(s)	610, 1404, 1452, 1998, 2150, 2404, 2864, 3079, 3211
BtsI	GCAGTG	1 cut(s)	492
BtsIMutI	CAGTG	6 cut(s)	375, 492, 633, 1195, 1754, 2616
BtuMI	TCGCGA	1 cut(s)	2675
BveI	ACCTGC	2 cut(s)	1015, 2170
Cac8I	GCNNGC	9 cut(s)	117, 290, 1068, 2483, 2673, 2717, 2721, 3324, 3368
CaiI	CAGNNNCTG	1 cut(s)	3017
CciI	TCATGA	1 cut(s)	2533
CfoI	GCGC	1 cut(s)	3333
Cfr10I	RCCGGY	2 cut(s)	115, 1066
Cfr13I	GGNCC	9 cut(s)	247, 630, 802, 893, 1145, 2100, 2393, 2461, 3123
ClaI	ATCGAT	1 cut(s)	1197
CseI	GACGC	1 cut(s)	3089
CsiI	ACCWGGT	1 cut(s)	3125
DdeI	CTNAG	8 cut(s)	171, 1081, 1149, 1316, 1529, 1757, 1773, 2466
DraI	TTTAAA	1 cut(s)	856
DraIII	CACNNNGTG	1 cut(s)	2569
EaeI	YGGCCR	2 cut(s)	113, 117
EagI	CGGCCG	1 cut(s)	113
Eam1104I	CTCTTC	4 cut(s)	1519, 1863, 2125, 2553
EarI	CTCTTC	4 cut(s)	1519, 1863, 2125, 2553
Ecl136II	GAGCTC	2 cut(s)	527, 2671
EclXI	CGGCCG	1 cut(s)	113
Eco130I	CCWWGG	3 cut(s)	2166, 2396, 3063
Eco147I	AGGCCT	1 cut(s)	2401
Eco24I	GRGCYC	2 cut(s)	529, 2673
Eco31I	GGTCTC	1 cut(s)	2722
Eco32I	GATATC	2 cut(s)	847, 1195
Eco47I	GGWCC	8 cut(s)	247, 630, 802, 1145, 2100, 2393, 2461, 3123
Eco52I	CGGCCG	1 cut(s)	113
Eco53kI	GAGCTC	2 cut(s)	527, 2671
Eco57I	CTGAAG	4 cut(s)	18, 381, 422, 3171
Eco72I	CACGTG	1 cut(s)	485
Eco81I	CCTNAGG	1 cut(s)	1149
EcoICRI	GAGCTC	2 cut(s)	527, 2671
EcoO109I	RGGNCCY	2 cut(s)	2461, 3123
EcoRI	GAATTC	1 cut(s)	1387
EcoRII	CCWGG	2 cut(s)	318, 3125
EcoRV	GATATC	2 cut(s)	847, 1195
EcoT14I	CCWWGG	3 cut(s)	2166, 2396, 3063
EcoT22I	ATGCAT	2 cut(s)	285, 2241
EcoT38I	GRGCYC	2 cut(s)	529, 2673
ErhI	CCWWGG	3 cut(s)	2166, 2396, 3063
FaqI	GGGAC	5 cut(s)	394, 593, 788, 1246, 2474
FauI	CCCGC	2 cut(s)	1975, 3063
FauNDI	CATATG	2 cut(s)	841, 2361
FblI	GTMKAC	2 cut(s)	1865, 2697
Fnu4HI	GCNGC	4 cut(s)	243, 316, 1488, 1911
FokI	GGATG	9 cut(s)	617, 1411, 1459, 1985, 2157, 2391, 2851, 3086, 3198
FriOI	GRGCYC	2 cut(s)	529, 2673
FseI	GGCCGGCC	1 cut(s)	119
Fsp4HI	GCNGC	4 cut(s)	243, 316, 1488, 1911
GlaI	GCGC	1 cut(s)	3332
GluI	GCNGC	4 cut(s)	243, 316, 1488, 1911
GsaI	CCCAGC	2 cut(s)	2461, 2513
GsuI	CTGGAG	1 cut(s)	3180
HaeIII	GGCC	4 cut(s)	115, 119, 895, 2401
HapII	CCGG	5 cut(s)	116, 1033, 1067, 2313, 2348
HgaI	GACGC	1 cut(s)	3089
HhaI	GCGC	1 cut(s)	3333
Hin6I	GCGC	1 cut(s)	3331
HinP1I	GCGC	1 cut(s)	3331
HindIII	AAGCTT	1 cut(s)	3183
HpaII	CCGG	5 cut(s)	116, 1033, 1067, 2313, 2348
HphI	GGTGA	7 cut(s)	50, 172, 1861, 1997, 2327, 2842, 3052
Hpy166II	GTNNAC	9 cut(s)	159, 373, 482, 1674, 1866, 2306, 2368, 2698, 3298
Hpy188I	TCNGA	7 cut(s)	423, 630, 1319, 1606, 1786, 2813, 3380
Hpy8I	GTNNAC	9 cut(s)	159, 373, 482, 1674, 1866, 2306, 2368, 2698, 3298
HpyAV	CCTTC	7 cut(s)	42, 80, 702, 1660, 2205, 2878, 3106
HpyCH4III	ACNGT	7 cut(s)	150, 277, 1573, 2266, 2372, 2620, 2742
HpyCH4IV	ACGT	2 cut(s)	484, 3250
HpyF3I	CTNAG	8 cut(s)	171, 1081, 1149, 1316, 1529, 1757, 1773, 2466
HpySE526I	ACGT	2 cut(s)	484, 3250
HspAI	GCGC	1 cut(s)	3331
KflI	GGGWCCC	1 cut(s)	2461
KpnI	GGTACC	1 cut(s)	3199
KroI	GCCGGC	2 cut(s)	115, 1066
KroNI	GCCGGC	2 cut(s)	117, 1068
LguI	GCTCTTC	3 cut(s)	1519, 2125, 2553
LmnI	GCTCC	4 cut(s)	524, 532, 2067, 3067
Lsp1109I	GCAGC	4 cut(s)	254, 302, 1474, 1922
LweI	GCATC	7 cut(s)	484, 543, 1299, 2049, 2087, 2932, 3064
MabI	ACCWGGT	1 cut(s)	3125
MaeII	ACGT	2 cut(s)	484, 3250
MaeIII	GTNAC	5 cut(s)	1567, 1706, 2539, 3202, 3251
MbiI	CCGCTC	1 cut(s)	3070
MfeI	CAATTG	3 cut(s)	1376, 2544, 2688
MflI	RGATCY	3 cut(s)	221, 796, 928
MhlI	GDGCHC	3 cut(s)	529, 2565, 2673
MlyI	GAGTC	2 cut(s)	164, 674
MmeI	TCCRAC	4 cut(s)	1757, 2070, 2515, 2970
Mph1103I	ATGCAT	2 cut(s)	285, 2241
MroNI	GCCGGC	2 cut(s)	115, 1066
MroXI	GAANNNNTTC	2 cut(s)	1557, 3154
MseI	TTAA	9 cut(s)	57, 105, 855, 1020, 1155, 1575, 1926, 1949, 2330
MslI	CAYNNNNRTG	2 cut(s)	2313, 2409
MspA1I	CMGCKG	5 cut(s)	245, 1628, 1913, 2723, 2856
MspCI	CTTAAG	1 cut(s)	2329
MspI	CCGG	5 cut(s)	116, 1033, 1067, 2313, 2348
MspR9I	CCNGG	3 cut(s)	320, 2313, 3127
MunI	CAATTG	3 cut(s)	1376, 2544, 2688
Mva1269I	GAATGC	1 cut(s)	1361
MvaI	CCWGG	2 cut(s)	320, 3127
MvnI	CGCG	2 cut(s)	391, 2675
NaeI	GCCGGC	2 cut(s)	117, 1068
NciI	CCSGG	1 cut(s)	2313
NdeI	CATATG	2 cut(s)	841, 2361
NgoMIV	GCCGGC	2 cut(s)	115, 1066
NlaIV	GGNNCC	5 cut(s)	804, 930, 2462, 2463, 3197
NmeAIII	GCCGAG	1 cut(s)	3307
NmuCI	GTSAC	3 cut(s)	2539, 3202, 3251
NruI	TCGCGA	1 cut(s)	2675
NsiI	ATGCAT	2 cut(s)	285, 2241
NspI	RCATGY	4 cut(s)	311, 558, 1771, 1815
OliI	CACNNNNGTG	1 cut(s)	2313
PagI	TCATGA	1 cut(s)	2533
PaqCI	CACCTGC	1 cut(s)	2170
PceI	AGGCCT	1 cut(s)	2401
PciSI	GCTCTTC	3 cut(s)	1519, 2125, 2553
PctI	GAATGC	1 cut(s)	1361
PdiI	GCCGGC	2 cut(s)	117, 1068
PdmI	GAANNNNTTC	2 cut(s)	1557, 3154
PflMI	CCANNNNNTGG	2 cut(s)	2497, 2711
PkrI	GCNGC	4 cut(s)	244, 317, 1489, 1912
PleI	GAGTC	2 cut(s)	163, 673
PmaCI	CACGTG	1 cut(s)	485
PmlI	CACGTG	1 cut(s)	485
PpsI	GAGTC	2 cut(s)	163, 673
Ppu21I	YACGTR	1 cut(s)	485
PpuMI	RGGWCCY	2 cut(s)	2461, 3123
PsiI	TTATAA	2 cut(s)	738, 2028
Psp124BI	GAGCTC	2 cut(s)	529, 2673
Psp5II	RGGWCCY	2 cut(s)	2461, 3123
Psp6I	CCWGG	2 cut(s)	318, 3125
PspCI	CACGTG	1 cut(s)	485
PspFI	CCCAGC	2 cut(s)	2457, 2509
PspGI	CCWGG	2 cut(s)	318, 3125
PspN4I	GGNNCC	5 cut(s)	804, 930, 2462, 2463, 3197
PspPI	GGNCC	9 cut(s)	247, 630, 802, 893, 1145, 2100, 2393, 2461, 3123
PspPPI	RGGWCCY	2 cut(s)	2461, 3123
PsrI	GAACNNNNNNTAC	2 cut(s)	1095, 1127
PstI	CTGCAG	1 cut(s)	826
PstNI	CAGNNNCTG	1 cut(s)	3017
PsuI	RGATCY	3 cut(s)	221, 796, 928
PvuII	CAGCTG	4 cut(s)	1628, 1913, 2723, 2856
RigI	GGCCGGCC	1 cut(s)	119
RruI	TCGCGA	1 cut(s)	2675
RseI	CAYNNNNRTG	2 cut(s)	2313, 2409
SacI	GAGCTC	2 cut(s)	529, 2673
SapI	GCTCTTC	3 cut(s)	1519, 2125, 2553
SaqAI	TTAA	9 cut(s)	57, 105, 855, 1020, 1155, 1575, 1926, 1949, 2330
SatI	GCNGC	4 cut(s)	243, 316, 1488, 1911
Sau96I	GGNCC	9 cut(s)	247, 630, 802, 893, 1145, 2100, 2393, 2461, 3123
SbfI	CCTGCAGG	1 cut(s)	826
SchI	GAGTC	2 cut(s)	164, 674
ScrFI	CCNGG	3 cut(s)	320, 2313, 3127
SdaI	CCTGCAGG	1 cut(s)	826
SduI	GDGCHC	3 cut(s)	529, 2565, 2673
SexAI	ACCWGGT	1 cut(s)	3125
SfaNI	GCATC	7 cut(s)	484, 543, 1299, 2049, 2087, 2932, 3064
SfcI	CTRYAG	3 cut(s)	822, 2520, 2694
SinI	GGWCC	8 cut(s)	247, 630, 802, 1145, 2100, 2393, 2461, 3123
SmiMI	CAYNNNNRTG	2 cut(s)	2313, 2409
SmlI	CTYRAG	3 cut(s)	2003, 2329, 2797
SmoI	CTYRAG	3 cut(s)	2003, 2329, 2797
Sse8387I	CCTGCAGG	1 cut(s)	826
SseBI	AGGCCT	1 cut(s)	2401
SsiI	CCGC	5 cut(s)	245, 391, 1010, 1982, 3070
SspI	AATATT	1 cut(s)	3024
SstI	GAGCTC	2 cut(s)	529, 2673
StuI	AGGCCT	1 cut(s)	2401
StyD4I	CCNGG	3 cut(s)	318, 2311, 3125
StyI	CCWWGG	3 cut(s)	2166, 2396, 3063
TaaI	ACNGT	7 cut(s)	150, 277, 1573, 2266, 2372, 2620, 2742
TaiI	ACGT	2 cut(s)	487, 3253
TaqI	TCGA	3 cut(s)	1197, 1696, 3132
TaqII	GACCGA	1 cut(s)	2792
TatI	WGTACW	3 cut(s)	1915, 1991, 3231
Tru1I	TTAA	9 cut(s)	57, 105, 855, 1020, 1155, 1575, 1926, 1949, 2330
Tru9I	TTAA	9 cut(s)	57, 105, 855, 1020, 1155, 1575, 1926, 1949, 2330
TscAI	CASTG	6 cut(s)	375, 499, 640, 1195, 1761, 2623
TseFI	GTSAC	3 cut(s)	2539, 3202, 3251
TseI	GCWGC	4 cut(s)	242, 315, 1487, 1910
Tsp45I	GTSAC	3 cut(s)	2539, 3202, 3251
TspGWI	ACGGA	2 cut(s)	1120, 2649
TspRI	CASTG	6 cut(s)	375, 499, 640, 1195, 1761, 2623
Van91I	CCANNNNNTGG	2 cut(s)	2497, 2711
Vha464I	CTTAAG	1 cut(s)	2329
VpaK11BI	GGWCC	8 cut(s)	247, 630, 802, 1145, 2100, 2393, 2461, 3123
XapI	RAATTY	6 cut(s)	295, 395, 724, 1346, 1387, 1692
XbaI	TCTAGA	2 cut(s)	2149, 3343
XceI	RCATGY	4 cut(s)	311, 558, 1771, 1815
XmiI	GTMKAC	2 cut(s)	1865, 2697
XmnI	GAANNNNTTC	2 cut(s)	1557, 3154
Zsp2I	ATGCAT	2 cut(s)	285, 2241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.