Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003605

Physical Location & Seq

Genomic Coordinates Forward (+)

51497645 .. 51499324

Gene Structure 1680 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0342300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGAAGCTCCGATCGTGGTTCTCCGCCACATGCTCCTCCCACGAATCCACCAACTCCATCCCCCAACCCCGACCCTCATACCAAAAACGACACGTCGTCTCCGACCCCAGCAGCTCCTCCGATAACCCCAGCAGCTCCTCCAGTACTAGCGACACCTGCAGCACCAGCCTCCATTCCAACCTCTCCCTCCAGACGCTGCCATCTGTCCCCTCCCTTCAGAAGCTCATCTCCCAACTCGACCCCCCAAACCTCTCCGTCTCTCACCTCTGCTTCACCACCCTCACTCCCACCCCCTCCTCCTCCTCTCTCCCGATCACCTGCCTCGCCGTCCACCACAACCGCCTCTACGCCGCCTCCGGCCACGAAATCAACGTCTACGATCAGGCTGACTTTTCCCACCTCGACTCATTCAACGCTCACGATCCCTCCTCGGGCACCGTGAAGTCCGTCTCGTTTTCCGACGGCAAGGTGTTCACCGCGCACCAGGACTGTAAAATCAAAGTCTGGGAGATAATCCCGGGTAAACGGCACAGACTCCTAACCACCCTCCCCACCGTCAACGACCGTTTGCTTCGTTTTGCGCTCCCCAAGAACTACGTCAGCATACGCCGGCACGTGAAACGCCTCTGGATCCAGCACGCCGACGCCGTTACCGGCATCGCCGTCAACAACGGCCTCGTCTACTCGGTTTCCTGGGACAAGACCTTGAAGATTTGGCGGGACTCCAACCTCCGCTGCGTGGAGTCCGTCAAGGCGCACGAGGACGCCGTGAGCGCGGTGGCGGTGGCGAAGGACGGGACCGTCTACACCGGGTCGGCGGACCGTCGGATCCGGGTCTGGGCGAGACCGCAAGACGAGAAGCGCCACGTGTTGGTGGCGACGCTGGAGAAGCACAAGTCGGCGGTGAACGCTTTGGCTCTAAACGACGACGGATCGGTGCTGTTCTCGGGGGCCTGTGACCGTTCGATCCTGGTGTGGGAGAGAGAGGACAGCGCGAACCACATGGCGGTTACGGGGGCGTTGAGGGGGCATGGTAAGGCGATACTGTGTTTATTCAACGTCGGGGATTTGCTGCTGAGTGGGTCCGCTGATCGGACGGTGAGGATGTGGCGGCGAGGGGAGGATGGCAGTTATTGCTGTTTGGGGGTTTTGGAGGGACACGTGAAACCGGTGAAGGCGCTGGTGGCGGTTACGGGAGAGAGTGGCGGCGGCGGCGTCGTTTCGGTTGTGAGTGGGAGTTTAGATGGAGTGGTGAAGGTGTGGCACGTGTCGGTTTCGGAGGCGATTAAAGAACAGAAGATGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009615 GO:0009719 GO:0009725 GO:0009751 GO:0009892 GO:0009987 GO:0010025 GO:0010033 GO:0010166 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0043331 GO:0044237 GO:0044238 GO:0046483 GO:0046677 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060147 GO:0060148 GO:0060255 GO:0060968 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:1901360 GO:1901568 GO:1901570 GO:1901576 GO:1901698 GO:1901699 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RdRP

Protein Analysis

435

Amino Acids

47.32

Weight (kDa)

8.94

Isoelectric Point (pI)

41.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR5	PF25175	104 - 284	3e-13	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	212 - 281	7.9e-09	WDR3 first beta-propeller domain
WD40_WDHD1_1st	PF24817	213 - 371	6e-12	WDHD1 first WD40 domain
Beta-prop_WDR3_2nd	PF25172	220 - 330	4.4e-14	WDR3 second beta-propeller domain
NBCH_WD40	PF20426	220 - 282	7.5e-07	Neurobeachin beta propeller domain
WD40_Prp19	PF24814	223 - 324	7.2e-12	Prp19 WD40 domain
Beta-prop_EML_2	PF23414	224 - 351	1.1e-08	Echinoderm microtubule-associated protein second beta-propeller
WDR55	PF24796	226 - 424	2.4e-10	WDR55
WD40_CDC20-Fz	PF24807	233 - 337	8.6e-11	CDC20/Fizzy WD40 domain
WD40_Gbeta	PF25391	235 - 371	7.5e-10	G protein beta WD-40 repeat protein
Beta-prop_TEP1_2nd	PF25047	242 - 425	1.9e-14	TEP-1 second beta-propeller
Beta-prop_WDR75_1st	PF23869	253 - 332	2.8e-07	WD repeat-containing protein 75 first beta-propeller
WD40_Prp19	PF24814	265 - 345	1.4e-07	Prp19 WD40 domain
Beta-prop_CAF1B_HIR1	PF24105	267 - 373	1.9e-07	CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR5	PF25175	270 - 430	2.7e-22	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	287 - 430	1.1e-16	WDR3 first beta-propeller domain
WD40	PF00400	291 - 326	3.8e-07	WD domain, G-beta repeat
WD40_Prp19	PF24814	305 - 394	2.4e-07	Prp19 WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14790
fragaria_vesca	FvH4_4g33391 FvH4_4g33391 FvH4_4g33391 FvH4_4g33391 FvH4_4g33391 FvH4_4g33391
malus_domestica	MD13G1019300.v1.1 MD13G1041300.v1.1 MD16G1017200.v1.1
prunus_persica	Prupe.1G334600_v2.0.a1 Prupe.1G334600_v2.0.a1
pyrus_communis	pycom13g01640 pycom13g03560 pycom13g03580 pycom16g01590
rosa_chinensis	RchiOBHm_Chr4g0442681 RchiOBHm_Chr4g0442701
rosa_laevigata	RLG00000005990 RLG00000005992
rosa_multiflora	Rmu_ssc0000204.1_g000024 Rmu_ssc0000204.1_g000026
rosa_roxburghii	Rroxscaffold_5G00383490 Rroxscaffold_5G00383510
rosa_rugosa	Rorug04G0342200 Rorug04G0342300
rosa_samantha	Rh4AG394700 Rh4AG394900 Rh4BG407600 Rh4CG423000 Rh4CG423600 Rh4DG401700 Rh4DG401900
rosa_wichuraiana	Rw4G034110 Rw4G034130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	164, 326
AasI	GACNNNNNNGTC	1 cut(s)	800
Acc36I	ACCTGC	2 cut(s)	164, 326
AccB1I	GGYRCC	1 cut(s)	434
AccB7I	CCANNNNNTGG	1 cut(s)	871
AccI	GTMKAC	3 cut(s)	375, 681, 804
AccII	CGCG	3 cut(s)	479, 776, 995
AclWI	GGATC	7 cut(s)	416, 625, 638, 823, 836, 940, 961
AcoI	YGGCCR	1 cut(s)	358
AcuI	CTGAAG	1 cut(s)	200
AcvI	CACGTG	4 cut(s)	616, 868, 1162, 1267
AcyI	GRCGYC	3 cut(s)	645, 765, 1215
AfaI	GTAC	1 cut(s)	145
AfiI	CCNNNNNNNGG	7 cut(s)	431, 739, 838, 871, 976, 1006, 1092
AflIII	ACRYGT	4 cut(s)	91, 867, 1159, 1266
AgeI	ACCGGT	1 cut(s)	1168
AgsI	TTSAA	3 cut(s)	412, 709, 1057
AhdI	GACNNNNNGTC	1 cut(s)	95
AjiI	CACGTC	1 cut(s)	94
AjnI	CCWGG	3 cut(s)	483, 692, 969
AluBI	AGCT	4 cut(s)	7, 114, 135, 223
AluI	AGCT	4 cut(s)	7, 114, 135, 223
Alw26I	GTCTC	4 cut(s)	103, 262, 454, 838
AlwI	GGATC	7 cut(s)	416, 625, 638, 823, 836, 940, 961
AlwNI	CAGNNNCTG	1 cut(s)	196
Ama87I	CYCGRG	3 cut(s)	430, 517, 946
AoxI	GGCC	3 cut(s)	358, 673, 951
ApeKI	GCWGC	6 cut(s)	111, 132, 159, 196, 735, 1072
ArsI	GACNNNNNNTTYG	2 cut(s)	357, 389
AsiGI	ACCGGT	1 cut(s)	1168
AspLEI	GCGC	7 cut(s)	481, 583, 757, 776, 864, 995, 1180
AspS9I	GGNCC	4 cut(s)	798, 820, 951, 1083
AsuC2I	CCSGG	4 cut(s)	518, 519, 811, 833
AsuHPI	GGTGA	8 cut(s)	254, 265, 307, 466, 916, 1111, 1183, 1264
AvaI	CYCGRG	3 cut(s)	430, 517, 946
AvaII	GGWCC	3 cut(s)	798, 820, 1083
BaeGI	GKGCMC	1 cut(s)	437
BamHI	GGATCC	2 cut(s)	630, 828
BanI	GGYRCC	1 cut(s)	434
BauI	CACGAG	1 cut(s)	758
BbrPI	CACGTG	4 cut(s)	616, 868, 1162, 1267
BbvI	GCAGC	6 cut(s)	123, 144, 171, 183, 722, 1059
BccI	CCATC	4 cut(s)	65, 208, 1118, 1238
BceAI	ACGGC	7 cut(s)	311, 478, 542, 632, 647, 688, 752
BciT130I	CCWGG	3 cut(s)	485, 694, 971
BcnI	CCSGG	4 cut(s)	518, 519, 811, 833
BcoDI	GTCTC	4 cut(s)	103, 262, 454, 838
BfaI	CTAG	1 cut(s)	147
BfmI	CTRYAG	1 cut(s)	157
BfoI	RGCGCY	2 cut(s)	865, 1181
BfuAI	ACCTGC	2 cut(s)	164, 326
BmcAI	AGTACT	1 cut(s)	145
Bme1390I	CCNGG	7 cut(s)	485, 518, 519, 694, 811, 833, 971
Bme18I	GGWCC	3 cut(s)	798, 820, 1083
BmeRI	GACNNNNNGTC	1 cut(s)	95
BmeT110I	CYCGRG	3 cut(s)	430, 517, 946
BmgBI	CACGTC	1 cut(s)	94
BmgT120I	GGNCC	4 cut(s)	798, 820, 951, 1083
BmiI	GGNNCC	6 cut(s)	436, 632, 799, 830, 952, 1084
BmrFI	CCNGG	7 cut(s)	485, 518, 519, 694, 811, 833, 971
BmsI	GCATC	1 cut(s)	666
BpmI	CTGGAG	3 cut(s)	124, 173, 905
BpuMI	CCSGG	4 cut(s)	518, 519, 811, 833
BsaAI	YACGTR	4 cut(s)	616, 868, 1162, 1267
BsaHI	GRCGYC	3 cut(s)	645, 765, 1215
BsaI	GGTCTC	1 cut(s)	838
BsaJI	CCNNGG	3 cut(s)	429, 517, 693
BsaWI	WCCGGW	1 cut(s)	1168
BsaXI	ACNNNNNCTCC	8 cut(s)	83, 113, 268, 298, 338, 368, 410, 440
Bsc4I	CCNNNNNNNGG	7 cut(s)	431, 739, 838, 871, 976, 1006, 1092
Bse118I	RCCGGY	3 cut(s)	609, 653, 1168
Bse1I	ACTGG	1 cut(s)	141
BseBI	CCWGG	3 cut(s)	485, 694, 971
BseDI	CCNNGG	3 cut(s)	429, 517, 693
BseGI	GGATG	3 cut(s)	57, 1110, 1129
BseLI	CCNNNNNNNGG	7 cut(s)	431, 739, 838, 871, 976, 1006, 1092
BseMII	CTCAG	1 cut(s)	1067
BseNI	ACTGG	1 cut(s)	141
BseRI	GAGGAG	7 cut(s)	25, 106, 127, 286, 289, 292, 418
BseSI	GKGCMC	1 cut(s)	437
BseXI	GCAGC	6 cut(s)	123, 144, 171, 183, 722, 1059
BseYI	CCCAGC	2 cut(s)	107, 128
Bsh1236I	CGCG	3 cut(s)	479, 776, 995
Bsh1285I	CGRYCG	2 cut(s)	14, 565
BshFI	GGCC	3 cut(s)	360, 675, 953
BshNI	GGYRCC	1 cut(s)	434
BshTI	ACCGGT	1 cut(s)	1168
BsiEI	CGRYCG	2 cut(s)	14, 565
BsiHKCI	CYCGRG	3 cut(s)	430, 517, 946
BsiSI	CCGG	7 cut(s)	357, 518, 610, 654, 810, 832, 1169
BslFI	GGGAC	5 cut(s)	191, 710, 734, 811, 1170
BslI	CCNNNNNNNGG	7 cut(s)	431, 739, 838, 871, 976, 1006, 1092
BsmAI	GTCTC	4 cut(s)	103, 262, 454, 838
BsmBI	CGTCTC	3 cut(s)	103, 262, 454
BsmFI	GGGAC	5 cut(s)	191, 710, 734, 811, 1170
BsnI	GGCC	3 cut(s)	360, 675, 953
Bso31I	GGTCTC	1 cut(s)	838
BsoBI	CYCGRG	3 cut(s)	430, 517, 946
Bsp1286I	GDGCHC	1 cut(s)	437
Bsp143I	GATC	9 cut(s)	11, 312, 379, 421, 630, 828, 932, 966, 1090
BspANI	GGCC	3 cut(s)	360, 675, 953
BspCNI	CTCAG	1 cut(s)	1068
BspFNI	CGCG	3 cut(s)	479, 776, 995
BspLI	GGNNCC	6 cut(s)	436, 632, 799, 830, 952, 1084
BspMAI	CTGCAG	1 cut(s)	161
BspMI	ACCTGC	2 cut(s)	164, 326
BspPI	GGATC	7 cut(s)	416, 625, 638, 823, 836, 940, 961
BspT107I	GGYRCC	1 cut(s)	434
BspTNI	GGTCTC	1 cut(s)	838
BsrFI	RCCGGY	3 cut(s)	609, 653, 1168
BsrI	ACTGG	1 cut(s)	141
BssAI	RCCGGY	3 cut(s)	609, 653, 1168
BssECI	CCNNGG	3 cut(s)	429, 517, 693
BssMI	GATC	9 cut(s)	11, 312, 379, 421, 630, 828, 932, 966, 1090
BssNI	GRCGYC	3 cut(s)	645, 765, 1215
BssSI	CACGAG	1 cut(s)	758
Bst2BI	CACGAG	1 cut(s)	758
Bst2UI	CCWGG	3 cut(s)	485, 694, 971
Bst4CI	ACNGT	9 cut(s)	439, 491, 556, 566, 802, 824, 962, 1047, 1099
BstACI	GRCGYC	3 cut(s)	645, 765, 1215
BstAPI	GCANNNNNTGC	1 cut(s)	1134
BstBAI	YACGTR	4 cut(s)	616, 868, 1162, 1267
BstC8I	GCNNGC	2 cut(s)	611, 639
BstDEI	CTNAG	1 cut(s)	1076
BstF5I	GGATG	3 cut(s)	57, 1110, 1129
BstFNI	CGCG	3 cut(s)	479, 776, 995
BstH2I	RGCGCY	2 cut(s)	865, 1181
BstHHI	GCGC	7 cut(s)	481, 583, 757, 776, 864, 995, 1180
BstKTI	GATC	9 cut(s)	14, 315, 382, 424, 633, 831, 935, 969, 1093
BstMAI	GTCTC	4 cut(s)	103, 262, 454, 838
BstMBI	GATC	9 cut(s)	11, 312, 379, 421, 630, 828, 932, 966, 1090
BstMCI	CGRYCG	2 cut(s)	14, 565
BstMWI	GCNNNNNNNGC	8 cut(s)	156, 165, 773, 889, 908, 1134, 1184, 1212
BstNI	CCWGG	3 cut(s)	485, 694, 971
BstNSI	RCATGY	1 cut(s)	33
BstSCI	CCNGG	7 cut(s)	483, 516, 517, 692, 809, 831, 969
BstSFI	CTRYAG	1 cut(s)	157
BstSLI	GKGCMC	1 cut(s)	437
BstUI	CGCG	3 cut(s)	479, 776, 995
BstV1I	GCAGC	6 cut(s)	123, 144, 171, 183, 722, 1059
BstX2I	RGATCY	2 cut(s)	630, 828
BstYI	RGATCY	2 cut(s)	630, 828
BsuRI	GGCC	3 cut(s)	360, 675, 953
BtgZI	GCGATG	1 cut(s)	643
BtrI	CACGTC	1 cut(s)	94
BtsCI	GGATG	3 cut(s)	57, 1110, 1129
BveI	ACCTGC	2 cut(s)	164, 326
Cac8I	GCNNGC	2 cut(s)	611, 639
CaiI	CAGNNNCTG	1 cut(s)	196
CfoI	GCGC	7 cut(s)	481, 583, 757, 776, 864, 995, 1180
Cfr10I	RCCGGY	3 cut(s)	609, 653, 1168
Cfr13I	GGNCC	4 cut(s)	798, 820, 951, 1083
Cfr9I	CCCGGG	1 cut(s)	517
CpoI	CGGWCCG	1 cut(s)	820
CseI	GACGC	5 cut(s)	202, 653, 773, 889, 1204
Csp6I	GTAC	1 cut(s)	144
CspAI	ACCGGT	1 cut(s)	1168
CspI	CGGWCCG	1 cut(s)	820
CviAII	CATG	3 cut(s)	30, 1003, 1031
CviQI	GTAC	1 cut(s)	144
DdeI	CTNAG	1 cut(s)	1076
DpnI	GATC	9 cut(s)	13, 314, 381, 423, 632, 830, 934, 968, 1092
DpnII	GATC	9 cut(s)	11, 312, 379, 421, 630, 828, 932, 966, 1090
DrdI	GACNNNNNNGTC	1 cut(s)	800
DriI	GACNNNNNGTC	1 cut(s)	95
DseDI	GACNNNNNNGTC	1 cut(s)	800
EaeI	YGGCCR	1 cut(s)	358
Eam1105I	GACNNNNNGTC	1 cut(s)	95
EciI	GGCGGA	2 cut(s)	13, 833
Eco31I	GGTCTC	1 cut(s)	838
Eco47I	GGWCC	3 cut(s)	798, 820, 1083
Eco57I	CTGAAG	1 cut(s)	200
Eco72I	CACGTG	4 cut(s)	616, 868, 1162, 1267
Eco88I	CYCGRG	3 cut(s)	430, 517, 946
EcoO109I	RGGNCCY	1 cut(s)	951
EcoRII	CCWGG	3 cut(s)	483, 692, 969
Esp3I	CGTCTC	3 cut(s)	103, 262, 454
FaeI	CATG	3 cut(s)	33, 1006, 1034
FaiI	YATR	6 cut(s)	31, 79, 605, 1004, 1032, 1306
FaqI	GGGAC	5 cut(s)	191, 710, 734, 811, 1170
FatI	CATG	3 cut(s)	29, 1002, 1030
FauI	CCCGC	1 cut(s)	711
FblI	GTMKAC	3 cut(s)	375, 681, 804
FokI	GGATG	3 cut(s)	44, 1117, 1136
FspBI	CTAG	1 cut(s)	147
GlaI	GCGC	7 cut(s)	480, 582, 756, 775, 863, 994, 1179
GsaI	CCCAGC	2 cut(s)	111, 132
GsuI	CTGGAG	3 cut(s)	124, 173, 905
HaeII	RGCGCY	2 cut(s)	865, 1181
HaeIII	GGCC	3 cut(s)	360, 675, 953
HapII	CCGG	7 cut(s)	357, 518, 610, 654, 810, 832, 1169
HgaI	GACGC	5 cut(s)	202, 653, 773, 889, 1204
HhaI	GCGC	7 cut(s)	481, 583, 757, 776, 864, 995, 1180
Hin1I	GRCGYC	3 cut(s)	645, 765, 1215
Hin1II	CATG	3 cut(s)	33, 1006, 1034
Hin6I	GCGC	7 cut(s)	479, 581, 755, 774, 862, 993, 1178
HinP1I	GCGC	7 cut(s)	479, 581, 755, 774, 862, 993, 1178
HincII	GTYRAC	2 cut(s)	559, 667
HindII	GTYRAC	2 cut(s)	559, 667
HinfI	GANTC	5 cut(s)	44, 404, 534, 722, 743
HpaII	CCGG	7 cut(s)	357, 518, 610, 654, 810, 832, 1169
HphI	GGTGA	8 cut(s)	254, 265, 307, 466, 916, 1111, 1183, 1264
Hpy166II	GTNNAC	9 cut(s)	331, 376, 474, 524, 559, 667, 682, 805, 907
Hpy188I	TCNGA	8 cut(s)	11, 103, 121, 219, 460, 828, 1095, 1279
Hpy188III	TCNNGA	4 cut(s)	190, 310, 419, 628
Hpy8I	GTNNAC	9 cut(s)	331, 376, 474, 524, 559, 667, 682, 805, 907
Hpy99I	CGWCG	9 cut(s)	98, 464, 647, 828, 883, 929, 932, 1064, 1220
HpyAV	CCTTC	4 cut(s)	224, 784, 1168, 1249
HpyCH4III	ACNGT	9 cut(s)	439, 491, 556, 566, 802, 824, 962, 1047, 1099
HpyCH4IV	ACGT	8 cut(s)	93, 372, 597, 615, 867, 1059, 1161, 1266
HpyCH4V	TGCA	1 cut(s)	159
HpyF10VI	GCNNNNNNNGC	8 cut(s)	156, 165, 773, 889, 908, 1134, 1184, 1212
HpyF3I	CTNAG	1 cut(s)	1076
HpySE526I	ACGT	8 cut(s)	93, 372, 597, 615, 867, 1059, 1161, 1266
Hsp92I	GRCGYC	3 cut(s)	645, 765, 1215
Hsp92II	CATG	3 cut(s)	33, 1006, 1034
HspAI	GCGC	7 cut(s)	479, 581, 755, 774, 862, 993, 1178
KroI	GCCGGC	1 cut(s)	609
KroNI	GCCGGC	1 cut(s)	611
Kzo9I	GATC	9 cut(s)	11, 312, 379, 421, 630, 828, 932, 966, 1090
LmnI	GCTCC	5 cut(s)	12, 38, 119, 140, 588
Lsp1109I	GCAGC	6 cut(s)	123, 144, 171, 183, 722, 1059
LweI	GCATC	1 cut(s)	666
MaeI	CTAG	1 cut(s)	147
MaeII	ACGT	8 cut(s)	93, 372, 597, 615, 867, 1059, 1161, 1266
MaeIII	GTNAC	4 cut(s)	649, 956, 1009, 1189
MalI	GATC	9 cut(s)	13, 314, 381, 423, 632, 830, 934, 968, 1092
MboI	GATC	9 cut(s)	11, 312, 379, 421, 630, 828, 932, 966, 1090
MboII	GAAGA	1 cut(s)	721
MflI	RGATCY	2 cut(s)	630, 828
MhlI	GDGCHC	1 cut(s)	437
MlyI	GAGTC	4 cut(s)	398, 528, 716, 752
MmeI	TCCRAC	5 cut(s)	126, 201, 483, 750, 806
MroNI	GCCGGC	1 cut(s)	609
MseI	TTAA	1 cut(s)	1287
MspA1I	CMGCKG	2 cut(s)	735, 1088
MspI	CCGG	7 cut(s)	357, 518, 610, 654, 810, 832, 1169
MspR9I	CCNGG	7 cut(s)	485, 518, 519, 694, 811, 833, 971
MvaI	CCWGG	3 cut(s)	485, 694, 971
MvnI	CGCG	3 cut(s)	479, 776, 995
MwoI	GCNNNNNNNGC	8 cut(s)	156, 165, 773, 889, 908, 1134, 1184, 1212
NaeI	GCCGGC	1 cut(s)	611
NciI	CCSGG	4 cut(s)	518, 519, 811, 833
NdeII	GATC	9 cut(s)	11, 312, 379, 421, 630, 828, 932, 966, 1090
NgoMIV	GCCGGC	1 cut(s)	609
NlaIII	CATG	3 cut(s)	33, 1006, 1034
NlaIV	GGNNCC	6 cut(s)	436, 632, 799, 830, 952, 1084
NmuCI	GTSAC	1 cut(s)	956
NspI	RCATGY	1 cut(s)	33
PaqCI	CACCTGC	2 cut(s)	164, 326
PcsI	WCGNNNNNNNCGW	4 cut(s)	99, 369, 645, 765
PdiI	GCCGGC	1 cut(s)	611
PfeI	GAWTC	1 cut(s)	44
PflMI	CCANNNNNTGG	1 cut(s)	871
PinAI	ACCGGT	1 cut(s)	1168
Ple19I	CGATCG	1 cut(s)	14
PleI	GAGTC	4 cut(s)	398, 528, 716, 751
PmaCI	CACGTG	4 cut(s)	616, 868, 1162, 1267
PmlI	CACGTG	4 cut(s)	616, 868, 1162, 1267
PpsI	GAGTC	4 cut(s)	398, 528, 716, 751
Ppu21I	YACGTR	4 cut(s)	616, 868, 1162, 1267
Psp6I	CCWGG	3 cut(s)	483, 692, 969
PspCI	CACGTG	4 cut(s)	616, 868, 1162, 1267
PspFI	CCCAGC	2 cut(s)	107, 128
PspGI	CCWGG	3 cut(s)	483, 692, 969
PspN4I	GGNNCC	6 cut(s)	436, 632, 799, 830, 952, 1084
PspPI	GGNCC	4 cut(s)	798, 820, 951, 1083
PstI	CTGCAG	1 cut(s)	161
PstNI	CAGNNNCTG	1 cut(s)	196
PsuI	RGATCY	2 cut(s)	630, 828
PvuI	CGATCG	1 cut(s)	14
RsaI	GTAC	1 cut(s)	145
RsaNI	GTAC	1 cut(s)	144
Rsr2I	CGGWCCG	1 cut(s)	820
RsrII	CGGWCCG	1 cut(s)	820
SaqAI	TTAA	1 cut(s)	1287
Sau3AI	GATC	9 cut(s)	11, 312, 379, 421, 630, 828, 932, 966, 1090
Sau96I	GGNCC	4 cut(s)	798, 820, 951, 1083
ScaI	AGTACT	1 cut(s)	145
SchI	GAGTC	4 cut(s)	398, 528, 716, 752
ScrFI	CCNGG	7 cut(s)	485, 518, 519, 694, 811, 833, 971
SduI	GDGCHC	1 cut(s)	437
SfaNI	GCATC	1 cut(s)	666
SfcI	CTRYAG	1 cut(s)	157
SinI	GGWCC	3 cut(s)	798, 820, 1083
SmaI	CCCGGG	1 cut(s)	519
SspMI	CTAG	1 cut(s)	147
StyD4I	CCNGG	7 cut(s)	483, 516, 517, 692, 809, 831, 969
TaaI	ACNGT	9 cut(s)	439, 491, 556, 566, 802, 824, 962, 1047, 1099
TaiI	ACGT	8 cut(s)	96, 375, 600, 618, 870, 1062, 1164, 1269
TaqI	TCGA	3 cut(s)	237, 402, 965
TatI	WGTACW	1 cut(s)	143
TauI	GCSGC	5 cut(s)	353, 1114, 1209, 1212, 1215
TfiI	GAWTC	1 cut(s)	44
Tru1I	TTAA	1 cut(s)	1287
Tru9I	TTAA	1 cut(s)	1287
TseFI	GTSAC	1 cut(s)	956
TseI	GCWGC	6 cut(s)	111, 132, 159, 196, 735, 1072
Tsp45I	GTSAC	1 cut(s)	956
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	4 cut(s)	244, 436, 736, 945
TspMI	CCCGGG	1 cut(s)	517
Van91I	CCANNNNNTGG	1 cut(s)	871
VpaK11BI	GGWCC	3 cut(s)	798, 820, 1083
XceI	RCATGY	1 cut(s)	33
XmaI	CCCGGG	1 cut(s)	517
XmiI	GTMKAC	3 cut(s)	375, 681, 804
XspI	CTAG	1 cut(s)	147
ZrmI	AGTACT	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.