AT1G16510

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0009941
Physical Location & Seq
Reverse (-)
5644572 .. 5645443
872 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G16510.1

Sequence Viewer

Length: 444 bp
ATGAAGCATCTCATCCGCCGCCTCTCTAGAGTCGCCGACTCATCCTCCGAATTCTCCATCCGCCGTTCCACCTCCTCCTTCCGCAACCGTCGCGGTCACCATCGTCTCCACGCGCCGCCGCCTCCGTGGTCAATATGTCCAGCTAGAAGAGTCAACACCGTCCCCGCTGGTCACGTACCTGTCTACGTCGGCGAGGAGATGGAGAGGTTCGTGGTTAGCGCAGAGCTTATGAACCACCCGATCTTCGTTGGTTTGCTAAACCGATCCGCTCAAGAATACGGTTACGCTCAGAAAGGAGTTCTTCATATCCCTTGCCACGTCATCGTGTTTGAGCGCGTGGTGGAAACGCTCCGGTTGGGAGGGTTTGAAGGGTCCGGTGATCTAGAGAATCTTGTGGCTTCGTTGCTCTCCGGTGATGAGTTGATACCTGAAACTACAGAGTAG

Protein Analysis

147

Amino Acids

16.48

Weight (kDa)

7.93

Isoelectric Point (pI)

60.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 33 - 117 2.7e-26 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 269
AccI GTMKAC 1 cut(s) 183
AccII CGCG 3 cut(s) 93, 113, 336
AciI CCGC 9 cut(s) 16, 19, 61, 82, 93, 116, 119, 165, 267
AclWI GGATC 1 cut(s) 258
AcsI RAATTY 1 cut(s) 50
AfaI GTAC 1 cut(s) 177
AgsI TTSAA 1 cut(s) 368
AjiI CACGTC 1 cut(s) 319
AluBI AGCT 2 cut(s) 143, 226
AluI AGCT 2 cut(s) 143, 226
Alw26I GTCTC 1 cut(s) 110
AlwI GGATC 1 cut(s) 258
ApoI RAATTY 1 cut(s) 50
AspLEI GCGC 3 cut(s) 115, 221, 336
AspS9I GGNCC 1 cut(s) 372
AsuHPI GGTGA 3 cut(s) 89, 389, 425
AvaII GGWCC 1 cut(s) 372
BccI CCATC 3 cut(s) 65, 108, 193
BceAI ACGGC 1 cut(s) 48
BcoDI GTCTC 1 cut(s) 110
BfaI CTAG 3 cut(s) 27, 144, 383
BfmI CTRYAG 1 cut(s) 435
BisI GCNGC 3 cut(s) 19, 116, 119
BlsI GCNGC 3 cut(s) 20, 117, 120
Bme18I GGWCC 1 cut(s) 372
BmgBI CACGTC 1 cut(s) 319
BmgT120I GGNCC 1 cut(s) 372
BmiI GGNNCC 1 cut(s) 373
BmsI GCATC 1 cut(s) 16
BpuEI CTTGAG 1 cut(s) 255
BsaAI YACGTR 1 cut(s) 175
BsaJI CCNNGG 1 cut(s) 125
BsaWI WCCGGW 3 cut(s) 351, 374, 410
BsaXI ACNNNNNCTCC 2 cut(s) 29, 59
BseDI CCNNGG 1 cut(s) 125
BseGI GGATG 3 cut(s) 12, 41, 57
BseMII CTCAG 1 cut(s) 302
BseRI GAGGAG 2 cut(s) 64, 209
Bsh1236I CGCG 3 cut(s) 93, 113, 336
BsiSI CCGG 3 cut(s) 352, 375, 411
BslFI GGGAC 1 cut(s) 146
BsmAI GTCTC 1 cut(s) 110
BsmBI CGTCTC 1 cut(s) 110
BsmFI GGGAC 1 cut(s) 146
Bsp143I GATC 3 cut(s) 240, 263, 379
BspACI CCGC 9 cut(s) 16, 19, 61, 82, 93, 116, 119, 165, 267
BspCNI CTCAG 1 cut(s) 301
BspFNI CGCG 3 cut(s) 93, 113, 336
BspLI GGNNCC 1 cut(s) 373
BspPI GGATC 1 cut(s) 258
BsrBI CCGCTC 1 cut(s) 269
BssECI CCNNGG 1 cut(s) 125
BssMI GATC 3 cut(s) 240, 263, 379
Bst4CI ACNGT 3 cut(s) 89, 160, 281
Bst6I CTCTTC 1 cut(s) 142
BstBAI YACGTR 1 cut(s) 175
BstDEI CTNAG 1 cut(s) 288
BstDSI CCRYGG 1 cut(s) 125
BstEII GGTNACC 1 cut(s) 95
BstF5I GGATG 3 cut(s) 12, 41, 57
BstFNI CGCG 3 cut(s) 93, 113, 336
BstHHI GCGC 3 cut(s) 115, 221, 336
BstKTI GATC 3 cut(s) 243, 266, 382
BstMAI GTCTC 1 cut(s) 110
BstMBI GATC 3 cut(s) 240, 263, 379
BstMWI GCNNNNNNNGC 1 cut(s) 90
BstPI GGTNACC 1 cut(s) 95
BstSFI CTRYAG 1 cut(s) 435
BstUI CGCG 3 cut(s) 93, 113, 336
BtgI CCRYGG 1 cut(s) 125
BtrI CACGTC 1 cut(s) 319
BtsCI GGATG 3 cut(s) 12, 41, 57
CfoI GCGC 3 cut(s) 115, 221, 336
Cfr13I GGNCC 1 cut(s) 372
Csp6I GTAC 1 cut(s) 176
CviJI RGCY 3 cut(s) 143, 226, 398
CviKI_1 RGCY 3 cut(s) 143, 226, 398
CviQI GTAC 1 cut(s) 176
DdeI CTNAG 1 cut(s) 288
DpnI GATC 3 cut(s) 242, 265, 381
DpnII GATC 3 cut(s) 240, 263, 379
Eam1104I CTCTTC 1 cut(s) 142
EarI CTCTTC 1 cut(s) 142
EciI GGCGGA 2 cut(s) 5, 50
Eco47I GGWCC 1 cut(s) 372
Eco91I GGTNACC 1 cut(s) 95
EcoO65I GGTNACC 1 cut(s) 95
EcoRI GAATTC 1 cut(s) 50
Esp3I CGTCTC 1 cut(s) 110
FaiI YATR 3 cut(s) 136, 230, 306
FalI AAGNNNNNCTT 2 cut(s) 285, 317
FaqI GGGAC 1 cut(s) 146
FauI CCCGC 1 cut(s) 172
FblI GTMKAC 1 cut(s) 183
Fnu4HI GCNGC 3 cut(s) 19, 116, 119
FokI GGATG 2 cut(s) 28, 44
Fsp4HI GCNGC 3 cut(s) 19, 116, 119
FspBI CTAG 3 cut(s) 27, 144, 383
GlaI GCGC 3 cut(s) 114, 220, 335
GluI GCNGC 3 cut(s) 19, 116, 119
HapII CCGG 3 cut(s) 352, 375, 411
HhaI GCGC 3 cut(s) 115, 221, 336
Hin6I GCGC 3 cut(s) 113, 219, 334
HinP1I GCGC 3 cut(s) 113, 219, 334
HincII GTYRAC 1 cut(s) 154
HindII GTYRAC 1 cut(s) 154
HinfI GANTC 4 cut(s) 30, 38, 150, 388
HpaII CCGG 3 cut(s) 352, 375, 411
HphI GGTGA 3 cut(s) 89, 389, 425
Hpy166II GTNNAC 2 cut(s) 154, 184
Hpy188I TCNGA 2 cut(s) 49, 291
Hpy188III TCNNGA 3 cut(s) 27, 272, 383
Hpy8I GTNNAC 2 cut(s) 154, 184
Hpy99I CGWCG 2 cut(s) 93, 191
HpyAV CCTTC 2 cut(s) 88, 362
HpyCH4III ACNGT 3 cut(s) 89, 160, 281
HpyCH4IV ACGT 3 cut(s) 174, 186, 318
HpyF10VI GCNNNNNNNGC 1 cut(s) 90
HpyF3I CTNAG 1 cut(s) 288
HpySE526I ACGT 3 cut(s) 174, 186, 318
HspAI GCGC 3 cut(s) 113, 219, 334
Kzo9I GATC 3 cut(s) 240, 263, 379
LmnI GCTCC 1 cut(s) 354
LpnPI CCDG 6 cut(s) 153, 153, 192, 365, 388, 424
LweI GCATC 1 cut(s) 16
MaeI CTAG 3 cut(s) 27, 144, 383
MaeII ACGT 3 cut(s) 174, 186, 318
MaeIII GTNAC 3 cut(s) 95, 170, 281
MalI GATC 3 cut(s) 242, 265, 381
MbiI CCGCTC 1 cut(s) 269
MboI GATC 3 cut(s) 240, 263, 379
MboII GAAGA 3 cut(s) 159, 235, 293
MluCI AATT 1 cut(s) 50
MlyI GAGTC 3 cut(s) 32, 39, 159
MnlI CCTC 8 cut(s) 32, 55, 82, 85, 132, 187, 198, 353
MspA1I CMGCKG 1 cut(s) 167
MspI CCGG 3 cut(s) 352, 375, 411
MvnI CGCG 3 cut(s) 93, 113, 336
MwoI GCNNNNNNNGC 1 cut(s) 90
NdeII GATC 3 cut(s) 240, 263, 379
NlaIV GGNNCC 1 cut(s) 373
NmuCI GTSAC 2 cut(s) 95, 170
PfeI GAWTC 1 cut(s) 388
PkrI GCNGC 3 cut(s) 20, 117, 120
PleI GAGTC 3 cut(s) 32, 38, 158
PpsI GAGTC 3 cut(s) 32, 38, 158
Ppu21I YACGTR 1 cut(s) 175
PspEI GGTNACC 1 cut(s) 95
PspN4I GGNNCC 1 cut(s) 373
PspPI GGNCC 1 cut(s) 372
RsaI GTAC 1 cut(s) 177
RsaNI GTAC 1 cut(s) 176
SatI GCNGC 3 cut(s) 19, 116, 119
Sau3AI GATC 3 cut(s) 240, 263, 379
Sau96I GGNCC 1 cut(s) 372
SchI GAGTC 3 cut(s) 32, 39, 159
SetI ASST 9 cut(s) 74, 145, 177, 181, 189, 209, 228, 321, 430
SfaNI GCATC 1 cut(s) 16
SfcI CTRYAG 1 cut(s) 435
SinI GGWCC 1 cut(s) 372
SmlI CTYRAG 1 cut(s) 270
SmoI CTYRAG 1 cut(s) 270
Sse9I AATT 1 cut(s) 50
SsiI CCGC 9 cut(s) 16, 19, 61, 82, 93, 116, 119, 165, 267
SspMI CTAG 3 cut(s) 27, 144, 383
TaaI ACNGT 3 cut(s) 89, 160, 281
TaiI ACGT 3 cut(s) 177, 189, 321
TasI AATT 1 cut(s) 50
TauI GCSGC 3 cut(s) 21, 118, 121
TfiI GAWTC 1 cut(s) 388
TseFI GTSAC 2 cut(s) 95, 170
Tsp45I GTSAC 2 cut(s) 95, 170
TspDTI ATGAA 3 cut(s) 17, 245, 293
TspGWI ACGGA 1 cut(s) 114
VpaK11BI GGWCC 1 cut(s) 372
XapI RAATTY 1 cut(s) 50
XbaI TCTAGA 2 cut(s) 26, 382
XmiI GTMKAC 1 cut(s) 183
XspI CTAG 3 cut(s) 27, 144, 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.